Wall clock time and date at job start Sat Apr 11 2020 05:49:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34773 * 119.99776 * 2 1 4 4 O 1.21279 * 119.99858 * 179.97438 * 3 2 1 5 5 C 1.50702 * 120.00168 * 359.97438 * 3 2 1 6 6 C 1.53003 * 109.46998 * 179.97438 * 5 3 2 7 7 H 1.09000 * 110.45543 * 307.60359 * 6 5 3 8 8 C 1.54510 * 110.50854 * 185.00267 * 6 5 3 9 9 C 1.54477 * 104.18108 * 241.14730 * 8 6 5 10 10 O 1.44642 * 104.69773 * 336.19290 * 9 8 6 11 11 C 1.44415 * 105.37338 * 40.34325 * 10 9 8 12 12 C 1.46503 * 119.99940 * 179.97438 * 2 1 3 13 13 H 1.09001 * 110.27152 * 177.91735 * 12 2 1 14 14 C 1.54587 * 110.30723 * 55.71965 * 12 2 1 15 15 C 1.54945 * 102.91952 * 219.12494 * 14 12 2 16 16 N 1.48534 * 103.22479 * 37.41672 * 15 14 12 17 17 C 1.46905 * 110.99624 * 200.27936 * 16 15 14 18 18 C 1.50702 * 109.46975 * 307.39645 * 17 16 15 19 19 O 1.21296 * 120.00189 * 359.97438 * 18 17 16 20 20 N 1.34775 * 119.99862 * 180.02562 * 18 17 16 21 21 C 1.37095 * 120.00106 * 179.97438 * 20 18 17 22 22 H 1.08000 * 120.00097 * 359.97438 * 21 20 18 23 23 C 1.38956 * 119.99872 * 180.02562 * 21 20 18 24 24 N 1.31415 * 119.99605 * 179.97438 * 23 21 20 25 25 Si 1.86795 * 120.00154 * 359.97438 * 23 21 20 26 26 H 1.48492 * 109.47431 * 89.99986 * 25 23 21 27 27 H 1.48501 * 109.46918 * 210.00418 * 25 23 21 28 28 H 1.48505 * 109.46879 * 330.00028 * 25 23 21 29 29 C 1.47897 * 105.82132 * 320.79142 * 16 15 14 30 30 H 1.09000 * 109.46817 * 90.00190 * 1 2 3 31 31 H 1.08999 * 109.47170 * 209.99682 * 1 2 3 32 32 H 1.08996 * 109.47358 * 329.99911 * 1 2 3 33 33 H 1.08997 * 109.46920 * 60.00133 * 5 3 2 34 34 H 1.08993 * 109.47139 * 300.00095 * 5 3 2 35 35 H 1.09002 * 110.51305 * 359.86260 * 8 6 5 36 36 H 1.08994 * 110.51141 * 122.43590 * 8 6 5 37 37 H 1.09006 * 110.37498 * 94.92285 * 9 8 6 38 38 H 1.09000 * 110.37254 * 217.25804 * 9 8 6 39 39 H 1.08998 * 110.37627 * 200.73568 * 11 10 9 40 40 H 1.09004 * 110.46797 * 78.44683 * 11 10 9 41 41 H 1.08999 * 110.73083 * 337.47979 * 14 12 2 42 42 H 1.09002 * 110.72673 * 100.76731 * 14 12 2 43 43 H 1.09001 * 110.66562 * 278.98107 * 15 14 12 44 44 H 1.09001 * 110.66452 * 155.85347 * 15 14 12 45 45 H 1.08999 * 109.47083 * 67.39330 * 17 16 15 46 46 H 1.08997 * 109.46763 * 187.39551 * 17 16 15 47 47 H 0.97004 * 119.99731 * 0.02562 * 20 18 17 48 48 H 0.96995 * 119.99346 * 180.02562 * 24 23 21 49 49 H 1.09003 * 109.91913 * 265.98346 * 29 16 15 50 50 H 1.09000 * 109.91860 * 144.68752 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3854 2.4723 -0.0006 6 6 2.3796 3.6352 0.0002 7 1 3.1002 3.5198 0.8099 8 6 1.6355 4.9835 0.1258 9 6 1.9990 5.7387 -1.1719 10 8 3.2474 5.1486 -1.6025 11 6 3.1050 3.7321 -1.3603 12 6 2.1976 -1.2688 0.0006 13 1 3.2713 -1.0849 -0.0367 14 6 1.7586 -2.1422 -1.1970 15 6 1.7260 -3.5683 -0.5921 16 7 1.2064 -3.3432 0.7811 17 6 1.5446 -4.4684 1.6629 18 6 1.0937 -5.7581 1.0269 19 8 0.5442 -5.7416 -0.0543 20 7 1.3001 -6.9299 1.6601 21 6 0.8895 -8.1031 1.0819 22 1 0.4003 -8.0884 0.1191 23 6 1.1019 -9.3111 1.7349 24 7 0.7078 -10.4357 1.1808 25 14 1.9474 -9.3365 3.4004 26 1 0.9288 -9.2196 4.4745 27 1 2.6900 -10.6127 3.5591 28 1 2.8958 -8.1974 3.4914 29 6 1.8394 -2.0921 1.2517 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3634 0.8899 0.5138 33 1 0.7584 2.5302 0.8891 34 1 0.7591 2.5298 -0.8907 35 1 0.5592 4.8217 0.1849 36 1 1.9866 5.5336 0.9988 37 1 1.2280 5.5876 -1.9275 38 1 2.1290 6.8016 -0.9686 39 1 4.0841 3.2565 -1.3030 40 1 2.5047 3.2698 -2.1440 41 1 0.7687 -1.8487 -1.5462 42 1 2.4873 -2.0827 -2.0054 43 1 2.7285 -3.9951 -0.5589 44 1 1.0517 -4.2109 -1.1582 45 1 2.6231 -4.4973 1.8177 46 1 1.0430 -4.3415 2.6223 47 1 1.7385 -6.9429 2.5253 48 1 0.8557 -11.2789 1.6369 49 1 2.7432 -2.3226 1.8157 50 1 1.1410 -1.5346 1.8758 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001494815623.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:59 Heat of formation + Delta-G solvation = -94.643014 kcal Electronic energy + Delta-G solvation = -29784.006561 eV Core-core repulsion = 25618.825841 eV Total energy + Delta-G solvation = -4165.180720 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -40.74910 -39.67631 -38.91037 -37.64951 -35.32934 -34.04120 -33.86929 -31.84649 -31.40163 -30.17855 -28.75257 -27.46916 -27.32261 -26.10976 -24.05014 -23.30466 -21.61735 -21.22299 -20.47197 -19.46069 -19.17150 -18.33439 -17.62485 -16.94695 -16.42164 -16.17986 -16.01952 -15.75871 -15.51225 -15.25975 -14.85315 -14.71229 -14.34274 -14.07660 -13.72696 -13.43775 -13.35220 -13.16943 -13.02689 -12.67850 -12.56200 -12.54133 -12.40520 -12.07368 -11.96538 -11.90707 -11.79510 -11.64727 -11.55024 -11.25320 -11.18177 -11.09192 -11.02344 -10.65368 -10.59188 -10.13848 -10.01701 -9.96605 -9.59430 -8.91650 -8.52328 -8.24329 -8.08654 -6.35360 -3.86898 2.34700 2.69232 2.99626 3.04064 3.12525 3.61974 3.67387 3.97863 4.03074 4.07266 4.26494 4.40731 4.43850 4.52001 4.64835 4.71434 4.80277 4.87860 4.89864 4.93581 5.07279 5.09952 5.17782 5.21519 5.26662 5.30295 5.33599 5.35657 5.39140 5.50802 5.54663 5.59306 5.63752 5.69511 5.72214 5.81030 5.82546 5.88680 5.91840 6.16954 6.34226 6.44130 6.55190 7.04511 7.09030 7.17685 7.53524 7.90413 8.10063 8.54919 8.90506 9.37605 9.77358 10.77537 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.037474 B = 0.001817 C = 0.001798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.998932 B =15405.265766 C =15570.661584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.604 5.604 3 C 0.511 3.489 4 O -0.542 6.542 5 C -0.131 4.131 6 C -0.107 4.107 7 H 0.093 0.907 8 C -0.153 4.153 9 C 0.043 3.957 10 O -0.378 6.378 11 C 0.055 3.945 12 C 0.130 3.870 13 H 0.105 0.895 14 C -0.134 4.134 15 C 0.038 3.962 16 N -0.493 5.493 17 C 0.033 3.967 18 C 0.451 3.549 19 O -0.563 6.563 20 N -0.588 5.588 21 C -0.306 4.306 22 H 0.120 0.880 23 C 0.042 3.958 24 N -0.879 5.879 25 Si 0.879 3.121 26 H -0.270 1.270 27 H -0.276 1.276 28 H -0.270 1.270 29 C 0.023 3.977 30 H 0.058 0.942 31 H 0.088 0.912 32 H 0.069 0.931 33 H 0.098 0.902 34 H 0.096 0.904 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.059 0.941 38 H 0.090 0.910 39 H 0.100 0.900 40 H 0.056 0.944 41 H 0.079 0.921 42 H 0.072 0.928 43 H 0.039 0.961 44 H 0.122 0.878 45 H 0.051 0.949 46 H 0.091 0.909 47 H 0.371 0.629 48 H 0.274 0.726 49 H 0.050 0.950 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.603 29.077 0.677 29.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.337 5.337 3 C 0.300 3.700 4 O -0.419 6.419 5 C -0.171 4.171 6 C -0.126 4.126 7 H 0.111 0.889 8 C -0.191 4.191 9 C -0.034 4.034 10 O -0.297 6.297 11 C -0.022 4.022 12 C 0.026 3.974 13 H 0.123 0.877 14 C -0.173 4.173 15 C -0.090 4.090 16 N -0.218 5.218 17 C -0.099 4.099 18 C 0.237 3.763 19 O -0.446 6.446 20 N -0.227 5.227 21 C -0.434 4.434 22 H 0.138 0.862 23 C -0.161 4.161 24 N -0.519 5.519 25 Si 0.706 3.294 26 H -0.196 1.196 27 H -0.201 1.201 28 H -0.195 1.195 29 C -0.106 4.106 30 H 0.077 0.923 31 H 0.106 0.894 32 H 0.088 0.912 33 H 0.116 0.884 34 H 0.114 0.886 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.077 0.923 38 H 0.108 0.892 39 H 0.118 0.882 40 H 0.074 0.926 41 H 0.098 0.902 42 H 0.091 0.909 43 H 0.057 0.943 44 H 0.140 0.860 45 H 0.069 0.931 46 H 0.109 0.891 47 H 0.203 0.797 48 H 0.084 0.916 49 H 0.068 0.932 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.463 28.976 -0.125 28.979 hybrid contribution 1.202 -0.589 1.657 2.131 sum 1.665 28.387 1.532 28.477 Atomic orbital electron populations 1.21861 0.79067 1.03882 1.02293 1.47929 1.07261 1.05574 1.72955 1.20689 0.88113 0.85402 0.75832 1.90691 1.13946 1.87358 1.49907 1.21808 0.98906 0.91759 1.04645 1.22313 0.97164 0.92998 1.00096 0.88888 1.23031 1.01087 0.95717 0.99218 1.23446 0.86913 0.98442 0.94598 1.89171 1.35280 1.19926 1.85346 1.23489 1.02125 0.82128 0.94461 1.22013 0.97638 0.82497 0.95266 0.87707 1.22942 1.02259 0.95285 0.96836 1.23499 0.99729 0.95738 0.89997 1.64637 1.53977 1.00775 1.02403 1.22144 0.99111 0.91176 0.97445 1.19587 0.85294 0.84116 0.87339 1.90476 1.46074 1.86207 1.21799 1.42198 1.54255 1.06514 1.19690 1.19426 1.36271 0.81512 1.06219 0.86216 1.25045 0.97698 0.95049 0.98312 1.69621 1.45950 0.97808 1.38547 0.86675 0.80001 0.78444 0.84290 1.19561 1.20143 1.19543 1.23303 0.98294 0.92274 0.96713 0.92344 0.89361 0.91234 0.88358 0.88616 0.90234 0.90378 0.92303 0.89153 0.88188 0.92607 0.90214 0.90890 0.94253 0.85983 0.93130 0.89086 0.79668 0.91568 0.93200 0.89978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.51 8.83 59.85 0.53 1.04 16 2 N -0.60 -5.81 2.77 -172.38 -0.48 -6.29 16 3 C 0.51 5.12 7.49 -10.99 -0.08 5.04 16 4 O -0.54 -7.32 14.39 5.56 0.08 -7.24 16 5 C -0.13 -0.84 3.48 -27.88 -0.10 -0.93 16 6 C -0.11 -0.79 2.70 -89.05 -0.24 -1.03 16 7 H 0.09 0.83 7.90 -51.93 -0.41 0.42 16 8 C -0.15 -0.83 6.73 -25.16 -0.17 -1.00 16 9 C 0.04 0.28 7.65 37.93 0.29 0.57 16 10 O -0.38 -3.85 11.65 -35.23 -0.41 -4.26 16 11 C 0.05 0.50 6.39 37.93 0.24 0.74 16 12 C 0.13 1.50 3.39 -66.57 -0.23 1.27 16 13 H 0.10 1.35 6.97 -51.93 -0.36 0.99 16 14 C -0.13 -1.64 6.65 -24.87 -0.17 -1.80 16 15 C 0.04 0.59 5.30 -1.89 -0.01 0.58 16 16 N -0.49 -7.49 5.26 -231.88 -1.22 -8.71 16 17 C 0.03 0.54 5.52 -4.97 -0.03 0.51 16 18 C 0.45 9.88 7.49 -10.98 -0.08 9.80 16 19 O -0.56 -14.23 13.10 5.54 0.07 -14.15 16 20 N -0.59 -13.69 5.09 -10.96 -0.06 -13.74 16 21 C -0.31 -8.47 10.16 -14.93 -0.15 -8.63 16 22 H 0.12 3.79 7.39 -52.49 -0.39 3.40 16 23 C 0.04 1.14 5.50 -17.46 -0.10 1.04 16 24 N -0.88 -25.36 13.96 55.50 0.77 -24.58 16 25 Si 0.88 19.12 27.74 -169.99 -4.71 14.41 16 26 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 27 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 28 H -0.27 -5.36 6.52 56.52 0.37 -4.99 16 29 C 0.02 0.28 5.86 -2.75 -0.02 0.27 16 30 H 0.06 0.38 7.88 -51.93 -0.41 -0.03 16 31 H 0.09 0.75 6.97 -51.93 -0.36 0.39 16 32 H 0.07 0.32 6.44 -51.93 -0.33 -0.01 16 33 H 0.10 0.45 7.40 -51.93 -0.38 0.06 16 34 H 0.10 0.47 7.94 -51.93 -0.41 0.06 16 35 H 0.08 0.29 7.73 -51.93 -0.40 -0.11 16 36 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.10 1.06 7.80 -51.93 -0.40 0.66 16 40 H 0.06 0.48 7.75 -51.93 -0.40 0.07 16 41 H 0.08 0.93 6.84 -51.93 -0.36 0.58 16 42 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.04 0.63 8.02 -51.93 -0.42 0.21 16 44 H 0.12 2.31 5.97 -51.93 -0.31 2.00 16 45 H 0.05 0.75 7.81 -51.93 -0.41 0.34 16 46 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 47 H 0.37 7.62 5.76 -40.82 -0.24 7.38 16 48 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 49 H 0.05 0.59 7.57 -51.93 -0.39 0.20 16 50 H 0.08 0.92 7.11 -51.93 -0.37 0.55 16 LS Contribution 388.09 15.07 5.85 5.85 Total: -1.00 -33.44 388.09 -8.44 -41.88 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: -8.04 Total: 9.36 kcal Atomic # 6 Polarization: 7.78 SS G_CDS: -0.30 Total: 7.47 kcal Atomic # 7 Polarization: -52.34 SS G_CDS: -0.98 Total: -53.32 kcal Atomic # 8 Polarization: -25.39 SS G_CDS: -0.26 Total: -25.65 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -4.71 Total: 14.41 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.44 -8.44 -41.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494815623.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.762 kcal (2) G-P(sol) polarization free energy of solvation -33.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds