Wall clock time and date at job start Sat Apr 11 2020 05:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34773 * 119.99776 * 2 1 4 4 O 1.21279 * 119.99858 * 179.97438 * 3 2 1 5 5 C 1.50702 * 120.00168 * 359.97438 * 3 2 1 6 6 C 1.53003 * 109.46998 * 179.97438 * 5 3 2 7 7 H 1.09000 * 110.45543 * 307.60359 * 6 5 3 8 8 C 1.54510 * 110.50854 * 185.00267 * 6 5 3 9 9 C 1.54477 * 104.18108 * 241.14730 * 8 6 5 10 10 O 1.44642 * 104.69773 * 336.19290 * 9 8 6 11 11 C 1.44415 * 105.37338 * 40.34325 * 10 9 8 12 12 C 1.46503 * 119.99940 * 179.97438 * 2 1 3 13 13 H 1.09001 * 110.27152 * 177.91735 * 12 2 1 14 14 C 1.54587 * 110.30723 * 55.71965 * 12 2 1 15 15 C 1.54945 * 102.91952 * 219.12494 * 14 12 2 16 16 N 1.48534 * 103.22479 * 37.41672 * 15 14 12 17 17 C 1.46905 * 110.99624 * 200.27936 * 16 15 14 18 18 C 1.50702 * 109.46975 * 307.39645 * 17 16 15 19 19 O 1.21296 * 120.00189 * 359.97438 * 18 17 16 20 20 N 1.34775 * 119.99862 * 180.02562 * 18 17 16 21 21 C 1.37095 * 120.00106 * 179.97438 * 20 18 17 22 22 H 1.08000 * 120.00097 * 359.97438 * 21 20 18 23 23 C 1.38956 * 119.99872 * 180.02562 * 21 20 18 24 24 N 1.31415 * 119.99605 * 179.97438 * 23 21 20 25 25 Si 1.86795 * 120.00154 * 359.97438 * 23 21 20 26 26 H 1.48492 * 109.47431 * 89.99986 * 25 23 21 27 27 H 1.48501 * 109.46918 * 210.00418 * 25 23 21 28 28 H 1.48505 * 109.46879 * 330.00028 * 25 23 21 29 29 C 1.47897 * 105.82132 * 320.79142 * 16 15 14 30 30 H 1.09000 * 109.46817 * 90.00190 * 1 2 3 31 31 H 1.08999 * 109.47170 * 209.99682 * 1 2 3 32 32 H 1.08996 * 109.47358 * 329.99911 * 1 2 3 33 33 H 1.08997 * 109.46920 * 60.00133 * 5 3 2 34 34 H 1.08993 * 109.47139 * 300.00095 * 5 3 2 35 35 H 1.09002 * 110.51305 * 359.86260 * 8 6 5 36 36 H 1.08994 * 110.51141 * 122.43590 * 8 6 5 37 37 H 1.09006 * 110.37498 * 94.92285 * 9 8 6 38 38 H 1.09000 * 110.37254 * 217.25804 * 9 8 6 39 39 H 1.08998 * 110.37627 * 200.73568 * 11 10 9 40 40 H 1.09004 * 110.46797 * 78.44683 * 11 10 9 41 41 H 1.08999 * 110.73083 * 337.47979 * 14 12 2 42 42 H 1.09002 * 110.72673 * 100.76731 * 14 12 2 43 43 H 1.09001 * 110.66562 * 278.98107 * 15 14 12 44 44 H 1.09001 * 110.66452 * 155.85347 * 15 14 12 45 45 H 1.08999 * 109.47083 * 67.39330 * 17 16 15 46 46 H 1.08997 * 109.46763 * 187.39551 * 17 16 15 47 47 H 0.97004 * 119.99731 * 0.02562 * 20 18 17 48 48 H 0.96995 * 119.99346 * 180.02562 * 24 23 21 49 49 H 1.09003 * 109.91913 * 265.98346 * 29 16 15 50 50 H 1.09000 * 109.91860 * 144.68752 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3854 2.4723 -0.0006 6 6 2.3796 3.6352 0.0002 7 1 3.1002 3.5198 0.8099 8 6 1.6355 4.9835 0.1258 9 6 1.9990 5.7387 -1.1719 10 8 3.2474 5.1486 -1.6025 11 6 3.1050 3.7321 -1.3603 12 6 2.1976 -1.2688 0.0006 13 1 3.2713 -1.0849 -0.0367 14 6 1.7586 -2.1422 -1.1970 15 6 1.7260 -3.5683 -0.5921 16 7 1.2064 -3.3432 0.7811 17 6 1.5446 -4.4684 1.6629 18 6 1.0937 -5.7581 1.0269 19 8 0.5442 -5.7416 -0.0543 20 7 1.3001 -6.9299 1.6601 21 6 0.8895 -8.1031 1.0819 22 1 0.4003 -8.0884 0.1191 23 6 1.1019 -9.3111 1.7349 24 7 0.7078 -10.4357 1.1808 25 14 1.9474 -9.3365 3.4004 26 1 0.9288 -9.2196 4.4745 27 1 2.6900 -10.6127 3.5591 28 1 2.8958 -8.1974 3.4914 29 6 1.8394 -2.0921 1.2517 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3634 0.8899 0.5138 33 1 0.7584 2.5302 0.8891 34 1 0.7591 2.5298 -0.8907 35 1 0.5592 4.8217 0.1849 36 1 1.9866 5.5336 0.9988 37 1 1.2280 5.5876 -1.9275 38 1 2.1290 6.8016 -0.9686 39 1 4.0841 3.2565 -1.3030 40 1 2.5047 3.2698 -2.1440 41 1 0.7687 -1.8487 -1.5462 42 1 2.4873 -2.0827 -2.0054 43 1 2.7285 -3.9951 -0.5589 44 1 1.0517 -4.2109 -1.1582 45 1 2.6231 -4.4973 1.8177 46 1 1.0430 -4.3415 2.6223 47 1 1.7385 -6.9429 2.5253 48 1 0.8557 -11.2789 1.6369 49 1 2.7432 -2.3226 1.8157 50 1 1.1410 -1.5346 1.8758 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494815623.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:58 Heat of formation + Delta-G solvation = -121.127876 kcal Electronic energy + Delta-G solvation = -29785.155031 eV Core-core repulsion = 25618.825841 eV Total energy + Delta-G solvation = -4166.329190 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 2.04 seconds Orbital eigenvalues (eV) -41.55845 -40.73650 -40.01211 -38.94022 -36.37312 -35.82396 -34.55349 -33.79371 -32.59209 -30.74808 -29.73535 -28.66435 -27.99846 -27.16163 -25.71808 -23.87772 -22.48118 -22.36693 -21.31960 -21.12940 -20.19640 -19.93833 -18.41395 -17.74957 -17.62024 -17.14095 -16.99677 -16.72608 -16.54657 -16.39197 -16.08214 -15.90658 -15.52661 -15.10773 -14.85132 -14.73950 -14.47885 -14.21713 -14.04794 -13.92276 -13.73307 -13.43447 -13.17470 -13.08108 -12.99823 -12.97693 -12.74185 -12.61914 -12.50677 -12.42705 -12.28005 -12.12585 -11.99053 -11.83364 -11.75253 -11.50385 -11.47645 -10.76498 -10.74301 -10.30380 -10.23837 -9.63928 -9.39045 -8.41960 -6.02471 1.29558 1.34477 1.43273 1.62121 1.92859 1.96524 2.21953 2.65786 3.06549 3.13091 3.18611 3.42401 3.62534 3.69654 3.77130 3.86641 3.95649 4.06019 4.14231 4.23102 4.28345 4.32723 4.34087 4.37570 4.40018 4.48447 4.50986 4.59869 4.65137 4.71429 4.79413 4.79842 4.88124 4.89212 4.92136 4.96414 5.07070 5.09405 5.15736 5.22614 5.26779 5.51857 5.54804 5.82611 5.87088 5.88597 6.01887 6.43472 6.58248 6.87751 7.17238 7.38260 7.94858 8.75403 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.037474 B = 0.001817 C = 0.001798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.998932 B =15405.265766 C =15570.661584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.603 5.603 3 C 0.506 3.494 4 O -0.584 6.584 5 C -0.122 4.122 6 C -0.104 4.104 7 H 0.073 0.927 8 C -0.143 4.143 9 C 0.034 3.966 10 O -0.409 6.409 11 C 0.053 3.947 12 C 0.136 3.864 13 H 0.091 0.909 14 C -0.122 4.122 15 C 0.039 3.961 16 N -0.503 5.503 17 C 0.043 3.957 18 C 0.450 3.550 19 O -0.602 6.602 20 N -0.591 5.591 21 C -0.326 4.326 22 H 0.058 0.942 23 C -0.014 4.014 24 N -0.933 5.933 25 Si 0.963 3.037 26 H -0.256 1.256 27 H -0.276 1.276 28 H -0.234 1.234 29 C 0.030 3.970 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.103 0.897 33 H 0.129 0.871 34 H 0.119 0.881 35 H 0.107 0.893 36 H 0.081 0.919 37 H 0.072 0.928 38 H 0.101 0.899 39 H 0.073 0.927 40 H 0.061 0.939 41 H 0.085 0.915 42 H 0.076 0.924 43 H 0.029 0.971 44 H 0.082 0.918 45 H 0.076 0.924 46 H 0.122 0.878 47 H 0.389 0.611 48 H 0.279 0.721 49 H 0.058 0.942 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.265 32.011 3.549 32.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.335 5.335 3 C 0.296 3.704 4 O -0.464 6.464 5 C -0.161 4.161 6 C -0.124 4.124 7 H 0.091 0.909 8 C -0.181 4.181 9 C -0.042 4.042 10 O -0.329 6.329 11 C -0.024 4.024 12 C 0.031 3.969 13 H 0.109 0.891 14 C -0.161 4.161 15 C -0.089 4.089 16 N -0.228 5.228 17 C -0.089 4.089 18 C 0.238 3.762 19 O -0.486 6.486 20 N -0.232 5.232 21 C -0.455 4.455 22 H 0.076 0.924 23 C -0.213 4.213 24 N -0.574 5.574 25 Si 0.783 3.217 26 H -0.180 1.180 27 H -0.201 1.201 28 H -0.157 1.157 29 C -0.098 4.098 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.121 0.879 33 H 0.147 0.853 34 H 0.137 0.863 35 H 0.126 0.874 36 H 0.100 0.900 37 H 0.090 0.910 38 H 0.119 0.881 39 H 0.091 0.909 40 H 0.079 0.921 41 H 0.104 0.896 42 H 0.095 0.905 43 H 0.047 0.953 44 H 0.100 0.900 45 H 0.093 0.907 46 H 0.140 0.860 47 H 0.224 0.776 48 H 0.088 0.912 49 H 0.076 0.924 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 0.101 31.952 2.749 32.070 hybrid contribution 1.252 -1.442 0.594 1.999 sum 1.352 30.510 3.342 30.723 Atomic orbital electron populations 1.22053 0.77212 1.04933 1.03182 1.47988 1.08277 1.04693 1.72546 1.21382 0.87815 0.86463 0.74703 1.90686 1.16004 1.87937 1.51774 1.21854 0.98477 0.88685 1.07089 1.22245 0.97228 0.94828 0.98065 0.90896 1.23012 1.02442 0.93991 0.98645 1.23711 0.85888 0.99071 0.95564 1.89135 1.37510 1.20402 1.85846 1.23447 1.01138 0.81854 0.95958 1.21761 0.97203 0.83436 0.94517 0.89097 1.22815 1.02816 0.93231 0.97212 1.23272 0.97944 0.97101 0.90599 1.64625 1.54771 1.01517 1.01913 1.22115 1.00707 0.88049 0.97979 1.20764 0.83247 0.85569 0.86611 1.90491 1.47229 1.87168 1.23760 1.42030 1.55105 1.05556 1.20523 1.18999 1.37532 0.84132 1.04884 0.92417 1.26085 0.98005 0.93727 1.03477 1.69801 1.47579 0.98846 1.41147 0.85390 0.79351 0.79628 0.77318 1.18050 1.20134 1.15722 1.23313 0.98833 0.90678 0.96983 0.91586 0.90610 0.87877 0.85343 0.86319 0.87429 0.90005 0.90988 0.88101 0.90858 0.92081 0.89598 0.90506 0.95265 0.89962 0.90666 0.85970 0.77590 0.91173 0.92399 0.88286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.73 8.83 127.77 1.13 1.86 16 2 N -0.60 -10.06 2.77 -817.67 -2.27 -12.33 16 3 C 0.51 9.06 7.49 87.66 0.66 9.71 16 4 O -0.58 -15.49 14.39 -3.03 -0.04 -15.54 16 5 C -0.12 -1.11 3.48 29.85 0.10 -1.01 16 6 C -0.10 -1.35 2.70 -9.78 -0.03 -1.38 16 7 H 0.07 1.24 7.90 -2.39 -0.02 1.23 16 8 C -0.14 -1.10 6.73 31.61 0.21 -0.89 16 9 C 0.03 0.36 7.65 72.48 0.55 0.92 16 10 O -0.41 -8.14 11.65 -148.98 -1.74 -9.87 16 11 C 0.05 0.95 6.39 72.48 0.46 1.41 16 12 C 0.14 2.92 3.39 45.87 0.16 3.08 16 13 H 0.09 2.27 6.97 -2.39 -0.02 2.25 16 14 C -0.12 -2.90 6.65 31.80 0.21 -2.69 16 15 C 0.04 1.22 5.30 86.65 0.46 1.68 16 16 N -0.50 -14.51 5.26 -887.53 -4.67 -19.18 16 17 C 0.04 1.30 5.52 85.56 0.47 1.77 16 18 C 0.45 19.81 7.49 87.66 0.66 20.47 16 19 O -0.60 -31.85 13.10 -3.08 -0.04 -31.89 16 20 N -0.59 -27.43 5.09 -306.98 -1.56 -28.99 16 21 C -0.33 -18.86 10.16 84.04 0.85 -18.00 16 22 H 0.06 3.97 7.39 -2.91 -0.02 3.94 16 23 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 24 N -0.93 -55.85 13.96 21.67 0.30 -55.55 16 25 Si 0.96 38.52 27.74 68.60 1.90 40.42 16 26 H -0.26 -9.68 7.11 99.48 0.71 -8.98 16 27 H -0.28 -11.03 7.11 99.48 0.71 -10.32 16 28 H -0.23 -7.92 6.52 99.48 0.65 -7.27 16 29 C 0.03 0.66 5.86 86.45 0.51 1.16 16 30 H 0.07 0.64 7.88 -2.39 -0.02 0.62 16 31 H 0.08 1.06 6.97 -2.39 -0.02 1.04 16 32 H 0.10 0.42 6.44 -2.39 -0.02 0.41 16 33 H 0.13 0.46 7.40 -2.39 -0.02 0.45 16 34 H 0.12 0.61 7.94 -2.39 -0.02 0.60 16 35 H 0.11 0.25 7.73 -2.39 -0.02 0.23 16 36 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 37 H 0.07 0.58 8.14 -2.38 -0.02 0.56 16 38 H 0.10 0.83 8.14 -2.39 -0.02 0.82 16 39 H 0.07 1.67 7.80 -2.39 -0.02 1.65 16 40 H 0.06 0.99 7.75 -2.38 -0.02 0.97 16 41 H 0.09 1.93 6.84 -2.39 -0.02 1.92 16 42 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 43 H 0.03 0.96 8.02 -2.39 -0.02 0.94 16 44 H 0.08 3.29 5.97 -2.39 -0.01 3.28 16 45 H 0.08 1.97 7.81 -2.39 -0.02 1.95 16 46 H 0.12 3.03 8.14 -2.39 -0.02 3.01 16 47 H 0.39 15.01 5.76 -92.71 -0.53 14.48 16 48 H 0.28 15.27 8.31 -92.71 -0.77 14.50 16 49 H 0.06 1.19 7.57 -2.39 -0.02 1.17 16 50 H 0.10 1.84 7.11 -2.39 -0.02 1.83 16 Total: -1.00 -80.69 388.09 -0.88 -81.57 By element: Atomic # 1 Polarization: 33.21 SS G_CDS: 0.36 Total: 33.57 kcal Atomic # 6 Polarization: 10.91 SS G_CDS: 6.88 Total: 17.79 kcal Atomic # 7 Polarization: -107.85 SS G_CDS: -8.20 Total: -116.05 kcal Atomic # 8 Polarization: -55.48 SS G_CDS: -1.82 Total: -57.30 kcal Atomic # 14 Polarization: 38.52 SS G_CDS: 1.90 Total: 40.42 kcal Total: -80.69 -0.88 -81.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494815623.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.557 kcal (2) G-P(sol) polarization free energy of solvation -80.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.04 seconds