Wall clock time and date at job start Sat Apr 11 2020 05:51:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42899 * 114.00534 * 2 1 4 4 C 1.52998 * 109.47436 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.47291 * 64.99410 * 4 3 2 6 6 C 1.46761 * 124.34601 * 90.00253 * 5 4 3 7 7 C 1.54477 * 105.47339 * 163.00506 * 6 5 4 8 8 H 1.08997 * 110.97488 * 267.25897 * 7 6 5 9 9 C 1.50708 * 110.97146 * 143.53206 * 7 6 5 10 10 O 1.21281 * 119.99647 * 0.02562 * 9 7 6 11 11 N 1.34771 * 120.00199 * 179.97438 * 9 7 6 12 12 C 1.47429 * 125.64782 * 4.94973 * 11 9 7 13 13 C 1.54906 * 104.83115 * 155.90454 * 12 11 9 14 14 C 1.55152 * 101.58670 * 37.00667 * 13 12 11 15 15 C 1.47024 * 125.65099 * 184.98283 * 11 9 7 16 16 H 1.08997 * 109.88220 * 300.60236 * 15 11 9 17 17 C 1.53002 * 109.87987 * 61.60923 * 15 11 9 18 18 N 1.46496 * 109.47007 * 185.37342 * 17 15 11 19 19 C 1.36940 * 120.00053 * 175.02236 * 18 17 15 20 20 H 1.07997 * 119.99800 * 359.97438 * 19 18 17 21 21 C 1.38805 * 120.00000 * 179.97438 * 19 18 17 22 22 N 1.31614 * 120.00201 * 359.97438 * 21 19 18 23 23 Si 1.86808 * 119.99944 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46740 * 270.00155 * 23 21 19 25 25 H 1.48494 * 109.47077 * 149.99914 * 23 21 19 26 26 H 1.48501 * 109.46966 * 29.99772 * 23 21 19 27 27 C 1.54627 * 101.76349 * 25.41823 * 7 6 5 28 28 C 1.34415 * 124.35422 * 270.03071 * 5 4 3 29 29 O 1.21281 * 124.94015 * 0.34550 * 28 5 4 30 30 H 1.09010 * 109.46882 * 300.00239 * 1 2 3 31 31 H 1.08997 * 109.46789 * 59.99793 * 1 2 3 32 32 H 1.08997 * 109.47367 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47144 * 59.99806 * 3 2 1 34 34 H 1.09004 * 109.47059 * 300.00044 * 3 2 1 35 35 H 1.09003 * 109.47105 * 304.99958 * 4 3 2 36 36 H 1.08997 * 109.47033 * 184.99709 * 4 3 2 37 37 H 1.09001 * 110.24967 * 44.00205 * 6 5 4 38 38 H 1.09004 * 110.24522 * 282.00493 * 6 5 4 39 39 H 1.09005 * 110.36468 * 274.74077 * 12 11 9 40 40 H 1.08994 * 110.36782 * 36.95081 * 12 11 9 41 41 H 1.09007 * 111.00171 * 155.08383 * 13 12 11 42 42 H 1.08997 * 111.00472 * 278.88972 * 13 12 11 43 43 H 1.08997 * 110.72325 * 206.13849 * 14 13 12 44 44 H 1.09000 * 110.72106 * 82.85676 * 14 13 12 45 45 H 1.09003 * 109.47332 * 65.36730 * 17 15 11 46 46 H 1.09007 * 109.47316 * 305.37105 * 17 15 11 47 47 H 0.96996 * 119.99943 * 355.01497 * 18 17 15 48 48 H 0.96996 * 120.00376 * 359.97438 * 22 21 19 49 49 H 1.09002 * 110.49178 * 93.88310 * 27 7 6 50 50 H 1.09007 * 110.48382 * 216.52531 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9757 0.5641 -1.2527 6 6 4.3111 1.3083 -2.4724 7 6 5.1150 0.3224 -3.3488 8 1 6.1855 0.4270 -3.1723 9 6 4.7910 0.5107 -4.8085 10 8 3.9891 1.3550 -5.1476 11 7 5.3932 -0.2584 -5.7371 12 6 6.3050 -1.3835 -5.4610 13 6 6.2195 -2.2814 -6.7204 14 6 6.0979 -1.2240 -7.8493 15 6 5.2501 -0.1139 -7.1932 16 1 4.2036 -0.2275 -7.4760 17 6 5.7614 1.2596 -7.6325 18 7 5.4977 1.4446 -9.0616 19 6 5.7768 2.6445 -9.6597 20 1 6.1909 3.4545 -9.0776 21 6 5.5275 2.8196 -11.0139 22 7 5.0233 1.8323 -11.7233 23 14 5.9075 4.4567 -11.8295 24 1 4.7150 5.3381 -11.7496 25 1 6.2609 4.2298 -13.2538 26 1 7.0487 5.1035 -11.1333 27 6 4.6003 -1.0439 -2.8396 28 6 4.1238 -0.7597 -1.4322 29 8 3.9077 -1.6036 -0.5883 30 1 -0.3633 0.5139 0.8901 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.6887 1.8463 0.8900 34 1 1.6887 1.8464 -0.8900 35 1 3.8515 0.5681 0.8410 36 1 3.9786 2.1764 0.0889 37 1 4.9202 2.1786 -2.2278 38 1 3.4017 1.6165 -2.9883 39 1 7.3236 -1.0210 -5.3220 40 1 5.9746 -1.9318 -4.5789 41 1 7.1252 -2.8764 -6.8382 42 1 5.3369 -2.9200 -6.6857 43 1 5.5834 -1.6414 -8.7149 44 1 7.0804 -0.8442 -8.1294 45 1 6.8341 1.3236 -7.4496 46 1 5.2492 2.0366 -7.0650 47 1 5.1256 0.7172 -9.5843 48 1 4.8263 0.9822 -11.2999 49 1 3.7745 -1.3952 -3.4583 50 1 5.4080 -1.7757 -2.8284 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001499900203.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:08 Heat of formation + Delta-G solvation = -88.667371 kcal Electronic energy + Delta-G solvation = -30483.927193 eV Core-core repulsion = 26319.005596 eV Total energy + Delta-G solvation = -4164.921597 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.12363 -39.79430 -38.06471 -37.64909 -36.26525 -34.85228 -33.71948 -31.72534 -31.40018 -29.59857 -28.48725 -27.97019 -26.59058 -25.12301 -24.28670 -23.20556 -22.54385 -22.02337 -20.69714 -19.69568 -18.95706 -17.70824 -17.20361 -17.14266 -16.84350 -16.50948 -16.13824 -15.73246 -15.57027 -15.11592 -14.80981 -14.57695 -14.23858 -13.86381 -13.77065 -13.64205 -13.61035 -13.26688 -13.15265 -13.04456 -13.00984 -12.73390 -12.37174 -12.24654 -12.11273 -11.78792 -11.68030 -11.59875 -11.46713 -11.21894 -10.80095 -10.67791 -10.55939 -10.48235 -10.15362 -10.00733 -9.95401 -9.69588 -9.20725 -8.95309 -8.85140 -8.57182 -6.98350 -6.08528 -3.07824 2.42110 2.50253 2.64632 2.92530 3.48241 3.53318 3.58569 3.72169 3.93848 4.05582 4.32111 4.49157 4.60269 4.66140 4.70352 4.70613 4.76629 4.86739 4.91420 4.95202 5.01167 5.07819 5.09018 5.16395 5.19589 5.27053 5.36776 5.40651 5.42272 5.45797 5.51367 5.62014 5.63989 5.71135 5.82090 5.85792 5.94631 6.02632 6.22696 6.28214 6.38580 6.71161 6.83288 6.85013 6.90282 7.51676 7.83731 7.99874 8.12768 8.77676 9.24546 10.10663 10.25287 11.40299 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015139 B = 0.002479 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.061984 B =11291.167596 C =12354.228402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.377 6.377 3 C 0.039 3.961 4 C 0.130 3.870 5 N -0.618 5.618 6 C 0.116 3.884 7 C -0.119 4.119 8 H 0.117 0.883 9 C 0.538 3.462 10 O -0.523 6.523 11 N -0.608 5.608 12 C 0.093 3.907 13 C -0.134 4.134 14 C -0.123 4.123 15 C 0.129 3.871 16 H 0.077 0.923 17 C 0.153 3.847 18 N -0.739 5.739 19 C -0.327 4.327 20 H 0.064 0.936 21 C -0.046 4.046 22 N -0.945 5.945 23 Si 1.083 2.917 24 H -0.295 1.295 25 H -0.288 1.288 26 H -0.295 1.295 27 C -0.145 4.145 28 C 0.526 3.474 29 O -0.517 6.517 30 H 0.039 0.961 31 H 0.040 0.960 32 H 0.085 0.915 33 H 0.059 0.941 34 H 0.053 0.947 35 H 0.091 0.909 36 H 0.096 0.904 37 H 0.085 0.915 38 H 0.092 0.908 39 H 0.071 0.929 40 H 0.078 0.922 41 H 0.083 0.917 42 H 0.075 0.925 43 H 0.082 0.918 44 H 0.082 0.918 45 H 0.016 0.984 46 H 0.036 0.964 47 H 0.366 0.634 48 H 0.254 0.746 49 H 0.108 0.892 50 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.496 -6.625 24.291 25.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.295 6.295 3 C -0.039 4.039 4 C 0.008 3.992 5 N -0.353 5.353 6 C -0.007 4.007 7 C -0.140 4.140 8 H 0.135 0.865 9 C 0.324 3.676 10 O -0.398 6.398 11 N -0.342 5.342 12 C -0.030 4.030 13 C -0.172 4.172 14 C -0.161 4.161 15 C 0.026 3.974 16 H 0.095 0.905 17 C 0.025 3.975 18 N -0.385 5.385 19 C -0.458 4.458 20 H 0.082 0.918 21 C -0.243 4.243 22 N -0.591 5.591 23 Si 0.914 3.086 24 H -0.223 1.223 25 H -0.214 1.214 26 H -0.222 1.222 27 C -0.185 4.185 28 C 0.313 3.687 29 O -0.392 6.392 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.103 0.897 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.109 0.891 36 H 0.114 0.886 37 H 0.104 0.896 38 H 0.110 0.890 39 H 0.089 0.911 40 H 0.096 0.904 41 H 0.102 0.898 42 H 0.093 0.907 43 H 0.101 0.899 44 H 0.101 0.899 45 H 0.033 0.967 46 H 0.054 0.946 47 H 0.199 0.801 48 H 0.065 0.935 49 H 0.126 0.874 50 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -0.934 -5.666 23.390 24.084 hybrid contribution -0.268 -0.650 1.248 1.433 sum -1.202 -6.316 24.638 25.463 Atomic orbital electron populations 1.22734 0.81276 1.02779 0.99716 1.88045 1.19362 1.26800 1.95306 1.23030 0.94435 0.85777 1.00686 1.21417 0.92288 0.99286 0.86194 1.48187 1.67325 1.07329 1.12445 1.22000 1.00715 0.94006 0.83962 1.22192 1.02644 0.96478 0.92730 0.86529 1.19638 0.80702 0.80930 0.86300 1.90774 1.33490 1.34063 1.81484 1.48447 1.46690 1.32431 1.06628 1.22485 0.94062 0.87460 0.98953 1.22788 1.02855 0.97321 0.94187 1.22687 1.01350 0.94433 0.97602 1.21861 1.00325 0.97026 0.78169 0.90539 1.20863 0.96742 0.93017 0.86877 1.42209 1.78284 1.14280 1.03753 1.20038 1.39749 0.91158 0.94833 0.91824 1.25768 1.00106 1.05416 0.93038 1.70849 1.46730 1.03882 1.37676 0.83188 0.75660 0.73917 0.75812 1.22303 1.21377 1.22188 1.22399 1.03663 0.97137 0.95314 1.20593 0.76660 0.82214 0.89230 1.90734 1.50920 1.49030 1.48522 0.94252 0.94168 0.89687 0.92306 0.92838 0.89054 0.88585 0.89620 0.88997 0.91117 0.90403 0.89805 0.90655 0.89914 0.89890 0.96656 0.94590 0.80067 0.93456 0.87414 0.87219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.38 -4.35 10.22 -35.23 -0.36 -4.71 16 3 C 0.04 0.33 6.28 37.16 0.23 0.56 16 4 C 0.13 1.04 6.33 -4.04 -0.03 1.02 16 5 N -0.62 -6.12 2.90 -172.42 -0.50 -6.62 16 6 C 0.12 1.09 6.71 -3.12 -0.02 1.07 16 7 C -0.12 -1.12 2.96 -90.14 -0.27 -1.39 16 8 H 0.12 0.86 8.14 -51.93 -0.42 0.44 16 9 C 0.54 7.39 6.84 -10.98 -0.08 7.32 16 10 O -0.52 -9.49 14.67 5.56 0.08 -9.40 16 11 N -0.61 -8.05 3.06 -163.01 -0.50 -8.55 16 12 C 0.09 0.86 6.61 -2.53 -0.02 0.85 16 13 C -0.13 -1.26 7.08 -24.59 -0.17 -1.43 16 14 C -0.12 -1.66 6.11 -24.90 -0.15 -1.81 16 15 C 0.13 2.13 2.92 -66.95 -0.20 1.93 16 16 H 0.08 1.41 8.14 -51.93 -0.42 0.98 16 17 C 0.15 3.26 5.66 -4.04 -0.02 3.24 16 18 N -0.74 -19.03 5.46 -59.91 -0.33 -19.36 16 19 C -0.33 -9.48 9.99 -15.06 -0.15 -9.64 16 20 H 0.06 1.84 7.83 -52.49 -0.41 1.43 16 21 C -0.05 -1.36 5.50 -17.44 -0.10 -1.46 16 22 N -0.95 -29.49 13.70 55.49 0.76 -28.73 16 23 Si 1.08 26.43 29.92 -169.99 -5.09 21.35 16 24 H -0.30 -7.04 7.11 56.52 0.40 -6.64 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 26 H -0.30 -6.79 7.11 56.52 0.40 -6.39 16 27 C -0.14 -1.34 5.20 -26.75 -0.14 -1.48 16 28 C 0.53 6.25 7.72 -10.86 -0.08 6.17 16 29 O -0.52 -8.03 17.45 5.56 0.10 -7.93 16 30 H 0.04 0.26 8.14 -51.92 -0.42 -0.16 16 31 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.09 0.81 7.93 -51.93 -0.41 0.40 16 36 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.09 1.05 6.96 -51.93 -0.36 0.69 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.08 0.55 5.32 -51.93 -0.28 0.27 16 41 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 44 H 0.08 1.22 7.76 -51.93 -0.40 0.81 16 45 H 0.02 0.33 8.01 -51.93 -0.42 -0.08 16 46 H 0.04 0.86 6.87 -51.93 -0.36 0.50 16 47 H 0.37 9.44 6.30 -40.82 -0.26 9.19 16 48 H 0.25 7.76 6.77 -40.82 -0.28 7.48 16 49 H 0.11 1.07 7.89 -51.93 -0.41 0.66 16 50 H 0.11 0.79 6.79 -51.93 -0.35 0.43 16 LS Contribution 399.92 15.07 6.03 6.03 Total: -1.00 -38.36 399.92 -8.10 -46.47 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -8.22 Total: 5.15 kcal Atomic # 6 Polarization: 6.39 SS G_CDS: -0.07 Total: 6.32 kcal Atomic # 7 Polarization: -62.69 SS G_CDS: -0.57 Total: -63.25 kcal Atomic # 8 Polarization: -21.87 SS G_CDS: -0.18 Total: -22.05 kcal Atomic # 14 Polarization: 26.43 SS G_CDS: -5.09 Total: 21.35 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -38.36 -8.10 -46.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499900203.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.199 kcal (2) G-P(sol) polarization free energy of solvation -38.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds