Wall clock time and date at job start Sat Apr 11 2020 05:51:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42899 * 114.00534 * 2 1 4 4 C 1.52998 * 109.47436 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.47291 * 64.99410 * 4 3 2 6 6 C 1.46761 * 124.34601 * 90.00253 * 5 4 3 7 7 C 1.54477 * 105.47339 * 163.00506 * 6 5 4 8 8 H 1.08997 * 110.97488 * 267.25897 * 7 6 5 9 9 C 1.50708 * 110.97146 * 143.53206 * 7 6 5 10 10 O 1.21281 * 119.99647 * 0.02562 * 9 7 6 11 11 N 1.34771 * 120.00199 * 179.97438 * 9 7 6 12 12 C 1.47429 * 125.64782 * 4.94973 * 11 9 7 13 13 C 1.54906 * 104.83115 * 155.90454 * 12 11 9 14 14 C 1.55152 * 101.58670 * 37.00667 * 13 12 11 15 15 C 1.47024 * 125.65099 * 184.98283 * 11 9 7 16 16 H 1.08997 * 109.88220 * 300.60236 * 15 11 9 17 17 C 1.53002 * 109.87987 * 61.60923 * 15 11 9 18 18 N 1.46496 * 109.47007 * 185.37342 * 17 15 11 19 19 C 1.36940 * 120.00053 * 175.02236 * 18 17 15 20 20 H 1.07997 * 119.99800 * 359.97438 * 19 18 17 21 21 C 1.38805 * 120.00000 * 179.97438 * 19 18 17 22 22 N 1.31614 * 120.00201 * 359.97438 * 21 19 18 23 23 Si 1.86808 * 119.99944 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46740 * 270.00155 * 23 21 19 25 25 H 1.48494 * 109.47077 * 149.99914 * 23 21 19 26 26 H 1.48501 * 109.46966 * 29.99772 * 23 21 19 27 27 C 1.54627 * 101.76349 * 25.41823 * 7 6 5 28 28 C 1.34415 * 124.35422 * 270.03071 * 5 4 3 29 29 O 1.21281 * 124.94015 * 0.34550 * 28 5 4 30 30 H 1.09010 * 109.46882 * 300.00239 * 1 2 3 31 31 H 1.08997 * 109.46789 * 59.99793 * 1 2 3 32 32 H 1.08997 * 109.47367 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47144 * 59.99806 * 3 2 1 34 34 H 1.09004 * 109.47059 * 300.00044 * 3 2 1 35 35 H 1.09003 * 109.47105 * 304.99958 * 4 3 2 36 36 H 1.08997 * 109.47033 * 184.99709 * 4 3 2 37 37 H 1.09001 * 110.24967 * 44.00205 * 6 5 4 38 38 H 1.09004 * 110.24522 * 282.00493 * 6 5 4 39 39 H 1.09005 * 110.36468 * 274.74077 * 12 11 9 40 40 H 1.08994 * 110.36782 * 36.95081 * 12 11 9 41 41 H 1.09007 * 111.00171 * 155.08383 * 13 12 11 42 42 H 1.08997 * 111.00472 * 278.88972 * 13 12 11 43 43 H 1.08997 * 110.72325 * 206.13849 * 14 13 12 44 44 H 1.09000 * 110.72106 * 82.85676 * 14 13 12 45 45 H 1.09003 * 109.47332 * 65.36730 * 17 15 11 46 46 H 1.09007 * 109.47316 * 305.37105 * 17 15 11 47 47 H 0.96996 * 119.99943 * 355.01497 * 18 17 15 48 48 H 0.96996 * 120.00376 * 359.97438 * 22 21 19 49 49 H 1.09002 * 110.49178 * 93.88310 * 27 7 6 50 50 H 1.09007 * 110.48382 * 216.52531 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9757 0.5641 -1.2527 6 6 4.3111 1.3083 -2.4724 7 6 5.1150 0.3224 -3.3488 8 1 6.1855 0.4270 -3.1723 9 6 4.7910 0.5107 -4.8085 10 8 3.9891 1.3550 -5.1476 11 7 5.3932 -0.2584 -5.7371 12 6 6.3050 -1.3835 -5.4610 13 6 6.2195 -2.2814 -6.7204 14 6 6.0979 -1.2240 -7.8493 15 6 5.2501 -0.1139 -7.1932 16 1 4.2036 -0.2275 -7.4760 17 6 5.7614 1.2596 -7.6325 18 7 5.4977 1.4446 -9.0616 19 6 5.7768 2.6445 -9.6597 20 1 6.1909 3.4545 -9.0776 21 6 5.5275 2.8196 -11.0139 22 7 5.0233 1.8323 -11.7233 23 14 5.9075 4.4567 -11.8295 24 1 4.7150 5.3381 -11.7496 25 1 6.2609 4.2298 -13.2538 26 1 7.0487 5.1035 -11.1333 27 6 4.6003 -1.0439 -2.8396 28 6 4.1238 -0.7597 -1.4322 29 8 3.9077 -1.6036 -0.5883 30 1 -0.3633 0.5139 0.8901 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.6887 1.8463 0.8900 34 1 1.6887 1.8464 -0.8900 35 1 3.8515 0.5681 0.8410 36 1 3.9786 2.1764 0.0889 37 1 4.9202 2.1786 -2.2278 38 1 3.4017 1.6165 -2.9883 39 1 7.3236 -1.0210 -5.3220 40 1 5.9746 -1.9318 -4.5789 41 1 7.1252 -2.8764 -6.8382 42 1 5.3369 -2.9200 -6.6857 43 1 5.5834 -1.6414 -8.7149 44 1 7.0804 -0.8442 -8.1294 45 1 6.8341 1.3236 -7.4496 46 1 5.2492 2.0366 -7.0650 47 1 5.1256 0.7172 -9.5843 48 1 4.8263 0.9822 -11.2999 49 1 3.7745 -1.3952 -3.4583 50 1 5.4080 -1.7757 -2.8284 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001499900203.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:07 Heat of formation + Delta-G solvation = -117.092350 kcal Electronic energy + Delta-G solvation = -30485.159793 eV Core-core repulsion = 26319.005596 eV Total energy + Delta-G solvation = -4166.154196 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.05383 -40.81831 -38.88397 -38.74342 -37.23160 -36.76603 -34.60304 -33.39940 -32.56164 -30.55486 -29.84419 -28.78801 -27.27996 -26.55558 -25.60380 -24.53050 -23.82102 -22.92180 -21.79579 -20.60692 -20.07877 -19.35987 -18.53033 -17.93972 -17.73248 -17.54193 -17.13282 -16.72736 -16.49979 -16.22666 -15.78934 -15.73899 -15.71022 -15.35519 -15.11859 -15.05288 -14.58182 -14.39301 -14.14631 -14.05050 -13.78726 -13.66560 -13.62452 -13.13999 -12.99283 -12.78249 -12.75700 -12.59302 -12.49158 -12.41994 -12.14749 -12.08423 -11.92246 -11.87680 -11.66873 -11.33957 -11.19234 -10.97037 -10.76723 -10.64720 -9.77443 -9.72605 -9.16904 -8.44589 -5.38629 1.44436 1.55003 1.56370 1.67280 1.72496 1.82148 2.03464 2.68930 2.85000 3.07736 3.27443 3.35263 3.47824 3.58942 3.75805 3.83076 3.85875 3.95752 4.03666 4.08570 4.12327 4.22043 4.27538 4.33176 4.41680 4.42502 4.46303 4.48531 4.49678 4.52294 4.66314 4.72945 4.75791 4.78498 4.84533 4.87836 4.90351 4.96160 5.07624 5.11113 5.29653 5.36409 5.49323 5.53228 6.05167 6.21154 6.45564 6.48056 7.01712 7.06633 7.14407 7.93598 8.04714 9.07604 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015139 B = 0.002479 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.061984 B =11291.167596 C =12354.228402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.411 6.411 3 C 0.034 3.966 4 C 0.124 3.876 5 N -0.613 5.613 6 C 0.117 3.883 7 C -0.103 4.103 8 H 0.152 0.848 9 C 0.532 3.468 10 O -0.576 6.576 11 N -0.606 5.606 12 C 0.089 3.911 13 C -0.120 4.120 14 C -0.120 4.120 15 C 0.137 3.863 16 H 0.048 0.952 17 C 0.160 3.840 18 N -0.749 5.749 19 C -0.337 4.337 20 H 0.060 0.940 21 C -0.101 4.101 22 N -0.971 5.971 23 Si 1.131 2.869 24 H -0.286 1.286 25 H -0.287 1.287 26 H -0.273 1.273 27 C -0.136 4.136 28 C 0.518 3.482 29 O -0.560 6.560 30 H 0.057 0.943 31 H 0.040 0.960 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.049 0.951 35 H 0.082 0.918 36 H 0.131 0.869 37 H 0.111 0.889 38 H 0.068 0.932 39 H 0.090 0.910 40 H 0.109 0.891 41 H 0.113 0.887 42 H 0.083 0.917 43 H 0.074 0.926 44 H 0.072 0.928 45 H 0.019 0.981 46 H 0.007 0.993 47 H 0.363 0.637 48 H 0.245 0.755 49 H 0.099 0.901 50 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.302 -6.791 25.872 26.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.330 6.330 3 C -0.043 4.043 4 C 0.003 3.997 5 N -0.347 5.347 6 C -0.006 4.006 7 C -0.124 4.124 8 H 0.169 0.831 9 C 0.321 3.679 10 O -0.456 6.456 11 N -0.339 5.339 12 C -0.032 4.032 13 C -0.158 4.158 14 C -0.159 4.159 15 C 0.032 3.968 16 H 0.066 0.934 17 C 0.032 3.968 18 N -0.395 5.395 19 C -0.468 4.468 20 H 0.078 0.922 21 C -0.292 4.292 22 N -0.619 5.619 23 Si 0.955 3.045 24 H -0.213 1.213 25 H -0.213 1.213 26 H -0.198 1.198 27 C -0.176 4.176 28 C 0.307 3.693 29 O -0.438 6.438 30 H 0.076 0.924 31 H 0.058 0.942 32 H 0.103 0.897 33 H 0.101 0.899 34 H 0.067 0.933 35 H 0.101 0.899 36 H 0.149 0.851 37 H 0.129 0.871 38 H 0.086 0.914 39 H 0.108 0.892 40 H 0.127 0.873 41 H 0.131 0.869 42 H 0.101 0.899 43 H 0.093 0.907 44 H 0.091 0.909 45 H 0.037 0.963 46 H 0.025 0.975 47 H 0.195 0.805 48 H 0.055 0.945 49 H 0.118 0.882 50 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 0.888 -5.846 25.022 25.711 hybrid contribution -0.880 -0.566 0.799 1.316 sum 0.008 -6.412 25.821 26.605 Atomic orbital electron populations 1.22832 0.80217 1.03138 1.00598 1.88001 1.20800 1.28712 1.95529 1.23188 0.94618 0.84880 1.01603 1.21680 0.92246 1.00765 0.85043 1.48308 1.66339 1.06973 1.13042 1.22003 1.00159 0.94812 0.83584 1.22160 1.04504 0.96626 0.89147 0.83074 1.20425 0.79600 0.79895 0.87961 1.90755 1.35820 1.36400 1.82595 1.48554 1.47109 1.33396 1.04892 1.22837 0.94221 0.86156 1.00006 1.22816 1.04747 0.96362 0.91889 1.22604 0.99760 0.94735 0.98769 1.21538 0.99019 0.95305 0.80911 0.93365 1.20870 0.96461 0.95249 0.84177 1.42359 1.78155 1.13389 1.05568 1.20352 1.39077 0.92137 0.95254 0.92207 1.27263 0.99828 1.08037 0.94067 1.70957 1.48608 1.04232 1.38100 0.82593 0.76482 0.70409 0.75000 1.21341 1.21329 1.19788 1.22395 1.04318 0.97544 0.93392 1.20987 0.76215 0.82433 0.89687 1.90711 1.53004 1.50156 1.49936 0.92411 0.94174 0.89711 0.89911 0.93269 0.89927 0.85093 0.87062 0.91411 0.89159 0.87256 0.86858 0.89860 0.90712 0.90910 0.96272 0.97525 0.80464 0.94466 0.88233 0.84228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 113.37 1.25 1.72 16 2 O -0.41 -9.45 10.22 -148.98 -1.52 -10.97 16 3 C 0.03 0.55 6.28 71.98 0.45 1.00 16 4 C 0.12 1.79 6.33 86.38 0.55 2.34 16 5 N -0.61 -11.22 2.90 -818.00 -2.37 -13.59 16 6 C 0.12 2.02 6.71 86.83 0.58 2.60 16 7 C -0.10 -1.70 2.96 -10.48 -0.03 -1.73 16 8 H 0.15 1.53 8.14 -2.39 -0.02 1.51 16 9 C 0.53 14.23 6.84 87.66 0.60 14.83 16 10 O -0.58 -21.61 14.67 -3.03 -0.04 -21.65 16 11 N -0.61 -15.27 3.06 -788.04 -2.42 -17.69 16 12 C 0.09 1.31 6.61 86.85 0.57 1.88 16 13 C -0.12 -1.88 7.08 31.98 0.23 -1.66 16 14 C -0.12 -3.17 6.11 31.78 0.19 -2.98 16 15 C 0.14 4.56 2.92 45.34 0.13 4.70 16 16 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 17 C 0.16 6.99 5.66 86.38 0.49 7.48 16 18 N -0.75 -39.84 5.46 -343.45 -1.87 -41.72 16 19 C -0.34 -19.91 9.99 84.03 0.84 -19.07 16 20 H 0.06 3.51 7.83 -2.91 -0.02 3.49 16 21 C -0.10 -6.00 5.50 84.86 0.47 -5.54 16 22 N -0.97 -61.65 13.70 21.65 0.30 -61.35 16 23 Si 1.13 53.16 29.92 68.60 2.05 55.22 16 24 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 25 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 26 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 27 C -0.14 -2.19 5.20 30.59 0.16 -2.03 16 28 C 0.52 11.63 7.72 87.90 0.68 12.31 16 29 O -0.56 -17.08 17.45 -3.03 -0.05 -17.14 16 30 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 31 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.08 1.38 7.93 -2.39 -0.02 1.36 16 36 H 0.13 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.07 1.55 6.96 -2.38 -0.02 1.53 16 39 H 0.09 1.07 8.14 -2.38 -0.02 1.05 16 40 H 0.11 0.98 5.32 -2.39 -0.01 0.97 16 41 H 0.11 1.20 8.14 -2.38 -0.02 1.18 16 42 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 44 H 0.07 2.07 7.76 -2.39 -0.02 2.05 16 45 H 0.02 0.83 8.01 -2.39 -0.02 0.81 16 46 H 0.01 0.33 6.87 -2.38 -0.02 0.32 16 47 H 0.36 19.52 6.30 -92.71 -0.58 18.93 16 48 H 0.24 15.43 6.77 -92.71 -0.63 14.80 16 49 H 0.10 1.83 7.89 -2.39 -0.02 1.81 16 50 H 0.14 1.40 6.79 -2.38 -0.02 1.38 16 Total: -1.00 -87.83 399.92 1.72 -86.11 By element: Atomic # 1 Polarization: 26.42 SS G_CDS: 0.50 Total: 26.92 kcal Atomic # 6 Polarization: 8.70 SS G_CDS: 7.16 Total: 15.86 kcal Atomic # 7 Polarization: -127.97 SS G_CDS: -6.36 Total: -134.34 kcal Atomic # 8 Polarization: -48.14 SS G_CDS: -1.62 Total: -49.76 kcal Atomic # 14 Polarization: 53.16 SS G_CDS: 2.05 Total: 55.22 kcal Total: -87.83 1.72 -86.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499900203.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.982 kcal (2) G-P(sol) polarization free energy of solvation -87.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds