Wall clock time and date at job start Sat Apr 11 2020 05:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42904 * 114.00380 * 2 1 4 4 C 1.52992 * 109.47163 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.47369 * 64.99605 * 4 3 2 6 6 C 1.46766 * 124.34811 * 89.99964 * 5 4 3 7 7 C 1.54482 * 105.47281 * 197.04124 * 6 5 4 8 8 H 1.08999 * 110.97208 * 92.73889 * 7 6 5 9 9 C 1.50696 * 110.96719 * 216.46582 * 7 6 5 10 10 O 1.21278 * 120.00390 * 2.81106 * 9 7 6 11 11 N 1.34785 * 119.99808 * 182.81253 * 9 7 6 12 12 C 1.47421 * 125.64751 * 4.85632 * 11 9 7 13 13 C 1.54909 * 104.83074 * 155.90264 * 12 11 9 14 14 C 1.55159 * 101.58118 * 37.01313 * 13 12 11 15 15 C 1.47014 * 125.64750 * 184.89488 * 11 9 7 16 16 H 1.09000 * 109.88543 * 300.59758 * 15 11 9 17 17 C 1.53006 * 109.88402 * 61.60788 * 15 11 9 18 18 N 1.46500 * 109.47269 * 185.20934 * 17 15 11 19 19 C 1.36932 * 119.99858 * 175.02204 * 18 17 15 20 20 H 1.08003 * 119.99887 * 5.10176 * 19 18 17 21 21 C 1.38811 * 119.99881 * 185.10472 * 19 18 17 22 22 N 1.31621 * 119.99915 * 185.20332 * 21 19 18 23 23 Si 1.86799 * 120.00093 * 5.20820 * 21 19 18 24 24 H 1.48496 * 109.47093 * 265.18236 * 23 21 19 25 25 H 1.48502 * 109.47214 * 145.17817 * 23 21 19 26 26 H 1.48497 * 109.47022 * 25.18380 * 23 21 19 27 27 C 1.54631 * 101.79907 * 334.60209 * 7 6 5 28 28 C 1.34422 * 124.35020 * 270.02835 * 5 4 3 29 29 O 1.21279 * 124.93931 * 359.55117 * 28 5 4 30 30 H 1.08990 * 109.47705 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46805 * 300.00552 * 1 2 3 32 32 H 1.09002 * 109.46820 * 59.99975 * 1 2 3 33 33 H 1.08997 * 109.47157 * 59.99615 * 3 2 1 34 34 H 1.09004 * 109.46594 * 299.99841 * 3 2 1 35 35 H 1.08999 * 109.47411 * 304.99562 * 4 3 2 36 36 H 1.08997 * 109.47344 * 184.99720 * 4 3 2 37 37 H 1.08993 * 110.24450 * 78.03895 * 6 5 4 38 38 H 1.09007 * 110.24512 * 316.03586 * 6 5 4 39 39 H 1.08992 * 110.36755 * 274.74074 * 12 11 9 40 40 H 1.09007 * 110.36835 * 36.95754 * 12 11 9 41 41 H 1.09004 * 111.00069 * 155.08178 * 13 12 11 42 42 H 1.08995 * 111.01052 * 278.89895 * 13 12 11 43 43 H 1.08997 * 110.72024 * 206.13332 * 14 13 12 44 44 H 1.08997 * 110.72492 * 82.85877 * 14 13 12 45 45 H 1.09002 * 109.46775 * 65.20979 * 17 15 11 46 46 H 1.09000 * 109.46598 * 305.21238 * 17 15 11 47 47 H 0.97001 * 120.00177 * 355.02878 * 18 17 15 48 48 H 0.97001 * 119.99831 * 179.97438 * 22 21 19 49 49 H 1.08997 * 110.48856 * 143.45801 * 27 7 6 50 50 H 1.09003 * 110.48621 * 266.10807 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5637 -1.2509 6 6 4.3131 1.3075 -2.4706 7 6 4.2890 0.2640 -3.6094 8 1 3.3085 0.2270 -4.0840 9 6 5.3660 0.5485 -4.6244 10 8 6.1370 1.4681 -4.4489 11 7 5.4724 -0.2191 -5.7272 12 6 4.5466 -1.2987 -6.1151 13 6 4.7079 -1.4268 -7.6505 14 6 6.2288 -1.1748 -7.8259 15 6 6.5313 -0.1187 -6.7420 16 1 6.5298 0.8785 -7.1821 17 6 7.8924 -0.4034 -6.1037 18 7 8.9513 -0.1800 -7.0913 19 6 10.2656 -0.2741 -6.7189 20 1 10.5223 -0.5932 -5.7196 21 6 11.2682 0.0408 -7.6259 22 7 12.5303 -0.1469 -7.3032 23 14 10.8260 0.7312 -9.3044 24 1 10.7623 -0.3747 -10.2934 25 1 11.8592 1.7119 -9.7242 26 1 9.5050 1.4054 -9.2300 27 6 4.5828 -1.0468 -2.8435 28 6 4.1250 -0.7602 -1.4297 29 8 3.9212 -1.6028 -0.5815 30 1 -0.3634 -1.0275 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.6887 1.8464 0.8899 34 1 1.6887 1.8463 -0.8901 35 1 3.8508 0.5685 0.8427 36 1 3.9786 2.1764 0.0902 37 1 5.3067 1.7468 -2.3825 38 1 3.5712 2.0845 -2.6553 39 1 4.8252 -2.2316 -5.6253 40 1 3.5214 -1.0291 -5.8610 41 1 4.4359 -2.4264 -7.9898 42 1 4.1230 -0.6676 -8.1696 43 1 6.4422 -0.7799 -8.8192 44 1 6.7948 -2.0882 -7.6431 45 1 7.9250 -1.4387 -5.7641 46 1 8.0416 0.2627 -5.2539 47 1 8.7213 0.0348 -8.0088 48 1 13.2308 0.0728 -7.9372 49 1 4.0138 -1.8732 -3.2693 50 1 5.6500 -1.2680 -2.8612 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001499900209.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:06 Heat of formation + Delta-G solvation = -85.348284 kcal Electronic energy + Delta-G solvation = -30551.336849 eV Core-core repulsion = 26386.559178 eV Total energy + Delta-G solvation = -4164.777670 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.07769 -39.80556 -38.11326 -37.66318 -36.22182 -34.74602 -33.65374 -31.74954 -31.47603 -29.70769 -29.02729 -27.90166 -26.64616 -25.39935 -24.43848 -23.15347 -22.19704 -21.95580 -20.66360 -19.60234 -19.00586 -17.83951 -17.44254 -17.19901 -16.85245 -16.52520 -15.96313 -15.83812 -15.47548 -15.20769 -14.57663 -14.48519 -14.23270 -14.00426 -13.91808 -13.64635 -13.55839 -13.24988 -13.08002 -13.04254 -12.81363 -12.68344 -12.40827 -12.36067 -12.13041 -11.85465 -11.67224 -11.54440 -11.49079 -11.32271 -11.18529 -10.94844 -10.71624 -10.55207 -10.17515 -10.09541 -9.99774 -9.68203 -9.56890 -8.91187 -8.84988 -8.61238 -7.20465 -5.74314 -3.09889 2.45957 2.55704 2.62604 2.93828 3.37741 3.42154 3.44253 3.46786 3.96705 4.10346 4.33492 4.44787 4.61362 4.63231 4.65524 4.67458 4.73538 4.80258 4.89351 4.93544 4.98236 4.99126 5.05783 5.21618 5.22903 5.26317 5.33520 5.34452 5.41230 5.44944 5.53477 5.55275 5.60116 5.66977 5.70569 5.78677 5.89079 5.95517 6.22259 6.26809 6.33105 6.68864 6.80393 6.83536 6.93224 7.48859 8.01569 8.06019 8.12397 8.44210 9.23253 9.94895 10.14701 11.44118 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018819 B = 0.002502 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.495840 B =11186.944898 C =11861.566423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.376 6.376 3 C 0.041 3.959 4 C 0.129 3.871 5 N -0.619 5.619 6 C 0.116 3.884 7 C -0.118 4.118 8 H 0.112 0.888 9 C 0.537 3.463 10 O -0.521 6.521 11 N -0.608 5.608 12 C 0.098 3.902 13 C -0.133 4.133 14 C -0.126 4.126 15 C 0.126 3.874 16 H 0.077 0.923 17 C 0.150 3.850 18 N -0.750 5.750 19 C -0.240 4.240 20 H 0.089 0.911 21 C 0.004 3.996 22 N -0.933 5.933 23 Si 0.882 3.118 24 H -0.285 1.285 25 H -0.291 1.291 26 H -0.275 1.275 27 C -0.142 4.142 28 C 0.527 3.473 29 O -0.516 6.516 30 H 0.085 0.915 31 H 0.039 0.961 32 H 0.038 0.962 33 H 0.059 0.941 34 H 0.051 0.949 35 H 0.092 0.908 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.081 0.919 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.084 0.916 42 H 0.074 0.926 43 H 0.081 0.919 44 H 0.086 0.914 45 H 0.024 0.976 46 H 0.043 0.957 47 H 0.360 0.640 48 H 0.259 0.741 49 H 0.108 0.892 50 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.655 1.307 8.535 29.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.294 6.294 3 C -0.037 4.037 4 C 0.007 3.993 5 N -0.354 5.354 6 C -0.007 4.007 7 C -0.140 4.140 8 H 0.130 0.870 9 C 0.324 3.676 10 O -0.396 6.396 11 N -0.342 5.342 12 C -0.025 4.025 13 C -0.171 4.171 14 C -0.164 4.164 15 C 0.023 3.977 16 H 0.095 0.905 17 C 0.022 3.978 18 N -0.396 5.396 19 C -0.370 4.370 20 H 0.107 0.893 21 C -0.192 4.192 22 N -0.581 5.581 23 Si 0.712 3.288 24 H -0.212 1.212 25 H -0.217 1.217 26 H -0.201 1.201 27 C -0.183 4.183 28 C 0.314 3.686 29 O -0.391 6.391 30 H 0.103 0.897 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.110 0.890 36 H 0.115 0.885 37 H 0.114 0.886 38 H 0.099 0.901 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.102 0.898 42 H 0.092 0.908 43 H 0.099 0.901 44 H 0.105 0.895 45 H 0.042 0.958 46 H 0.061 0.939 47 H 0.192 0.808 48 H 0.069 0.931 49 H 0.127 0.873 50 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -28.053 1.250 9.390 29.609 hybrid contribution -0.473 0.833 -1.376 1.676 sum -28.526 2.083 8.014 29.703 Atomic orbital electron populations 1.22726 0.81417 1.02759 0.99586 1.88073 1.19214 1.26837 1.95274 1.23025 0.94537 0.85662 1.00476 1.21412 0.91974 0.99507 0.86454 1.48166 1.67384 1.07291 1.12536 1.21996 1.03221 0.93605 0.81849 1.22154 0.99841 0.96749 0.95209 0.86998 1.19653 0.85235 0.81721 0.80956 1.90779 1.43637 1.29585 1.75647 1.48441 1.27734 1.35049 1.23006 1.22387 0.93359 0.90831 0.95944 1.22785 0.97147 1.02651 0.94552 1.22729 0.95210 0.99750 0.98726 1.21884 0.88066 0.99750 0.87959 0.90463 1.20929 0.85320 0.98372 0.93148 1.42533 1.02680 1.86946 1.07397 1.19026 0.80499 1.37758 0.99704 0.89303 1.24696 0.95023 1.01474 0.97979 1.69714 0.98406 1.54137 1.35842 0.86543 0.77578 0.79200 0.85492 1.21167 1.21702 1.20127 1.22333 1.05023 0.97508 0.93403 1.20623 0.76217 0.82166 0.89619 1.90735 1.50580 1.49166 1.48615 0.89679 0.94263 0.94366 0.92302 0.93108 0.88963 0.88514 0.88603 0.90108 0.90909 0.90738 0.89772 0.90761 0.90077 0.89549 0.95773 0.93904 0.80801 0.93087 0.87342 0.87129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.33 16 2 O -0.38 -3.90 10.27 -35.23 -0.36 -4.26 16 3 C 0.04 0.30 6.28 37.15 0.23 0.54 16 4 C 0.13 1.05 6.33 -4.04 -0.03 1.03 16 5 N -0.62 -6.26 2.90 -172.39 -0.50 -6.76 16 6 C 0.12 1.06 6.73 -3.12 -0.02 1.04 16 7 C -0.12 -1.08 2.81 -90.14 -0.25 -1.33 16 8 H 0.11 0.75 7.52 -51.93 -0.39 0.36 16 9 C 0.54 7.03 6.80 -10.98 -0.07 6.95 16 10 O -0.52 -9.07 14.65 5.56 0.08 -8.99 16 11 N -0.61 -7.52 3.06 -163.02 -0.50 -8.02 16 12 C 0.10 0.82 6.34 -2.53 -0.02 0.81 16 13 C -0.13 -1.11 7.08 -24.58 -0.17 -1.29 16 14 C -0.13 -1.54 6.11 -24.89 -0.15 -1.69 16 15 C 0.13 1.94 2.92 -66.95 -0.20 1.74 16 16 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 17 C 0.15 3.03 5.66 -4.04 -0.02 3.01 16 18 N -0.75 -18.09 5.24 -59.91 -0.31 -18.41 16 19 C -0.24 -6.96 10.47 -15.06 -0.16 -7.12 16 20 H 0.09 2.79 8.06 -52.48 -0.42 2.37 16 21 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 22 N -0.93 -29.77 13.97 55.49 0.78 -29.00 16 23 Si 0.88 22.18 27.70 -169.99 -4.71 17.47 16 24 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 26 H -0.28 -6.53 6.60 56.52 0.37 -6.15 16 27 C -0.14 -1.41 6.06 -26.71 -0.16 -1.57 16 28 C 0.53 6.56 7.72 -10.83 -0.08 6.47 16 29 O -0.52 -8.38 17.49 5.56 0.10 -8.28 16 30 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.04 0.22 8.14 -51.93 -0.42 -0.21 16 32 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 35 H 0.09 0.88 7.92 -51.93 -0.41 0.47 16 36 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.10 1.06 6.92 -51.93 -0.36 0.70 16 38 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.07 0.45 7.35 -51.93 -0.38 0.07 16 41 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 44 H 0.09 1.13 7.76 -51.93 -0.40 0.73 16 45 H 0.02 0.49 8.02 -51.93 -0.42 0.07 16 46 H 0.04 0.98 6.87 -51.93 -0.36 0.62 16 47 H 0.36 8.28 5.44 -40.82 -0.22 8.06 16 48 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 49 H 0.11 0.88 8.14 -51.93 -0.42 0.45 16 50 H 0.11 1.23 7.89 -51.93 -0.41 0.82 16 LS Contribution 401.84 15.07 6.06 6.06 Total: -1.00 -38.28 401.84 -7.90 -46.17 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -8.43 Total: 4.09 kcal Atomic # 6 Polarization: 10.02 SS G_CDS: -0.09 Total: 9.93 kcal Atomic # 7 Polarization: -61.65 SS G_CDS: -0.54 Total: -62.18 kcal Atomic # 8 Polarization: -21.35 SS G_CDS: -0.18 Total: -21.54 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.71 Total: 17.47 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -38.28 -7.90 -46.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499900209.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.175 kcal (2) G-P(sol) polarization free energy of solvation -38.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds