Wall clock time and date at job start Sat Apr 11 2020 05:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42904 * 114.00380 * 2 1 4 4 C 1.52992 * 109.47163 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.47369 * 64.99605 * 4 3 2 6 6 C 1.46766 * 124.34811 * 89.99964 * 5 4 3 7 7 C 1.54482 * 105.47281 * 197.04124 * 6 5 4 8 8 H 1.08999 * 110.97208 * 92.73889 * 7 6 5 9 9 C 1.50696 * 110.96719 * 216.46582 * 7 6 5 10 10 O 1.21278 * 120.00390 * 2.81106 * 9 7 6 11 11 N 1.34785 * 119.99808 * 182.81253 * 9 7 6 12 12 C 1.47421 * 125.64751 * 4.85632 * 11 9 7 13 13 C 1.54909 * 104.83074 * 155.90264 * 12 11 9 14 14 C 1.55159 * 101.58118 * 37.01313 * 13 12 11 15 15 C 1.47014 * 125.64750 * 184.89488 * 11 9 7 16 16 H 1.09000 * 109.88543 * 300.59758 * 15 11 9 17 17 C 1.53006 * 109.88402 * 61.60788 * 15 11 9 18 18 N 1.46500 * 109.47269 * 185.20934 * 17 15 11 19 19 C 1.36932 * 119.99858 * 175.02204 * 18 17 15 20 20 H 1.08003 * 119.99887 * 5.10176 * 19 18 17 21 21 C 1.38811 * 119.99881 * 185.10472 * 19 18 17 22 22 N 1.31621 * 119.99915 * 185.20332 * 21 19 18 23 23 Si 1.86799 * 120.00093 * 5.20820 * 21 19 18 24 24 H 1.48496 * 109.47093 * 265.18236 * 23 21 19 25 25 H 1.48502 * 109.47214 * 145.17817 * 23 21 19 26 26 H 1.48497 * 109.47022 * 25.18380 * 23 21 19 27 27 C 1.54631 * 101.79907 * 334.60209 * 7 6 5 28 28 C 1.34422 * 124.35020 * 270.02835 * 5 4 3 29 29 O 1.21279 * 124.93931 * 359.55117 * 28 5 4 30 30 H 1.08990 * 109.47705 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46805 * 300.00552 * 1 2 3 32 32 H 1.09002 * 109.46820 * 59.99975 * 1 2 3 33 33 H 1.08997 * 109.47157 * 59.99615 * 3 2 1 34 34 H 1.09004 * 109.46594 * 299.99841 * 3 2 1 35 35 H 1.08999 * 109.47411 * 304.99562 * 4 3 2 36 36 H 1.08997 * 109.47344 * 184.99720 * 4 3 2 37 37 H 1.08993 * 110.24450 * 78.03895 * 6 5 4 38 38 H 1.09007 * 110.24512 * 316.03586 * 6 5 4 39 39 H 1.08992 * 110.36755 * 274.74074 * 12 11 9 40 40 H 1.09007 * 110.36835 * 36.95754 * 12 11 9 41 41 H 1.09004 * 111.00069 * 155.08178 * 13 12 11 42 42 H 1.08995 * 111.01052 * 278.89895 * 13 12 11 43 43 H 1.08997 * 110.72024 * 206.13332 * 14 13 12 44 44 H 1.08997 * 110.72492 * 82.85877 * 14 13 12 45 45 H 1.09002 * 109.46775 * 65.20979 * 17 15 11 46 46 H 1.09000 * 109.46598 * 305.21238 * 17 15 11 47 47 H 0.97001 * 120.00177 * 355.02878 * 18 17 15 48 48 H 0.97001 * 119.99831 * 179.97438 * 22 21 19 49 49 H 1.08997 * 110.48856 * 143.45801 * 27 7 6 50 50 H 1.09003 * 110.48621 * 266.10807 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5637 -1.2509 6 6 4.3131 1.3075 -2.4706 7 6 4.2890 0.2640 -3.6094 8 1 3.3085 0.2270 -4.0840 9 6 5.3660 0.5485 -4.6244 10 8 6.1370 1.4681 -4.4489 11 7 5.4724 -0.2191 -5.7272 12 6 4.5466 -1.2987 -6.1151 13 6 4.7079 -1.4268 -7.6505 14 6 6.2288 -1.1748 -7.8259 15 6 6.5313 -0.1187 -6.7420 16 1 6.5298 0.8785 -7.1821 17 6 7.8924 -0.4034 -6.1037 18 7 8.9513 -0.1800 -7.0913 19 6 10.2656 -0.2741 -6.7189 20 1 10.5223 -0.5932 -5.7196 21 6 11.2682 0.0408 -7.6259 22 7 12.5303 -0.1469 -7.3032 23 14 10.8260 0.7312 -9.3044 24 1 10.7623 -0.3747 -10.2934 25 1 11.8592 1.7119 -9.7242 26 1 9.5050 1.4054 -9.2300 27 6 4.5828 -1.0468 -2.8435 28 6 4.1250 -0.7602 -1.4297 29 8 3.9212 -1.6028 -0.5815 30 1 -0.3634 -1.0275 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.6887 1.8464 0.8899 34 1 1.6887 1.8463 -0.8901 35 1 3.8508 0.5685 0.8427 36 1 3.9786 2.1764 0.0902 37 1 5.3067 1.7468 -2.3825 38 1 3.5712 2.0845 -2.6553 39 1 4.8252 -2.2316 -5.6253 40 1 3.5214 -1.0291 -5.8610 41 1 4.4359 -2.4264 -7.9898 42 1 4.1230 -0.6676 -8.1696 43 1 6.4422 -0.7799 -8.8192 44 1 6.7948 -2.0882 -7.6431 45 1 7.9250 -1.4387 -5.7641 46 1 8.0416 0.2627 -5.2539 47 1 8.7213 0.0348 -8.0088 48 1 13.2308 0.0728 -7.9372 49 1 4.0138 -1.8732 -3.2693 50 1 5.6500 -1.2680 -2.8612 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001499900209.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:05 Heat of formation + Delta-G solvation = -114.495234 kcal Electronic energy + Delta-G solvation = -30552.600755 eV Core-core repulsion = 26386.559178 eV Total energy + Delta-G solvation = -4166.041577 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.99370 -40.78557 -38.82571 -38.68223 -37.20132 -36.57643 -34.51030 -33.63981 -32.51018 -30.84925 -30.05735 -28.74140 -27.19559 -26.81473 -25.50667 -24.11512 -23.63470 -22.94693 -21.73199 -20.53457 -20.24606 -19.40944 -18.57756 -18.02522 -17.52920 -17.51089 -16.93919 -16.55447 -16.43307 -16.25302 -16.10182 -15.65207 -15.43362 -15.25175 -15.00257 -14.81104 -14.61355 -14.39940 -14.17641 -13.98920 -13.89590 -13.68404 -13.61650 -13.11572 -13.04469 -13.01565 -12.79991 -12.71770 -12.50041 -12.35143 -12.24236 -12.07226 -12.02333 -11.88332 -11.73924 -11.56268 -11.12983 -10.99389 -10.73068 -10.58131 -9.73726 -9.67554 -9.35250 -8.06315 -5.41533 1.35398 1.41231 1.48064 1.49408 1.58643 1.75717 2.07822 2.46410 2.91174 3.11362 3.24390 3.32585 3.51065 3.62107 3.75551 3.85668 3.88300 3.99678 4.07554 4.08672 4.15506 4.31528 4.34420 4.37797 4.42838 4.50751 4.53787 4.54693 4.58109 4.60751 4.71125 4.78523 4.84491 4.85589 4.86729 4.89370 4.99242 5.03923 5.14352 5.18863 5.37106 5.44033 5.52257 5.70222 6.06864 6.16446 6.30047 6.53230 7.02569 7.10220 7.16026 7.75815 7.99169 9.15418 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018819 B = 0.002502 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.495840 B =11186.944898 C =11861.566423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.412 6.412 3 C 0.042 3.958 4 C 0.120 3.880 5 N -0.613 5.613 6 C 0.117 3.883 7 C -0.100 4.100 8 H 0.154 0.846 9 C 0.533 3.467 10 O -0.574 6.574 11 N -0.606 5.606 12 C 0.090 3.910 13 C -0.119 4.119 14 C -0.127 4.127 15 C 0.133 3.867 16 H 0.061 0.939 17 C 0.154 3.846 18 N -0.748 5.748 19 C -0.240 4.240 20 H 0.046 0.954 21 C -0.064 4.064 22 N -0.983 5.983 23 Si 0.960 3.040 24 H -0.268 1.268 25 H -0.295 1.295 26 H -0.251 1.251 27 C -0.136 4.136 28 C 0.517 3.483 29 O -0.563 6.563 30 H 0.082 0.918 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.079 0.921 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.124 0.876 37 H 0.072 0.928 38 H 0.112 0.888 39 H 0.082 0.918 40 H 0.113 0.887 41 H 0.110 0.890 42 H 0.088 0.912 43 H 0.085 0.915 44 H 0.074 0.926 45 H 0.022 0.978 46 H 0.008 0.992 47 H 0.369 0.631 48 H 0.260 0.740 49 H 0.134 0.866 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.730 1.767 6.368 33.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.332 6.332 3 C -0.035 4.035 4 C -0.001 4.001 5 N -0.347 5.347 6 C -0.006 4.006 7 C -0.121 4.121 8 H 0.171 0.829 9 C 0.322 3.678 10 O -0.453 6.453 11 N -0.339 5.339 12 C -0.031 4.031 13 C -0.156 4.156 14 C -0.165 4.165 15 C 0.029 3.971 16 H 0.080 0.920 17 C 0.026 3.974 18 N -0.394 5.394 19 C -0.371 4.371 20 H 0.064 0.936 21 C -0.255 4.255 22 N -0.633 5.633 23 Si 0.786 3.214 24 H -0.193 1.193 25 H -0.222 1.222 26 H -0.176 1.176 27 C -0.176 4.176 28 C 0.306 3.694 29 O -0.442 6.442 30 H 0.101 0.899 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.097 0.903 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.142 0.858 37 H 0.090 0.910 38 H 0.130 0.870 39 H 0.100 0.900 40 H 0.131 0.869 41 H 0.128 0.872 42 H 0.106 0.894 43 H 0.104 0.896 44 H 0.093 0.907 45 H 0.040 0.960 46 H 0.026 0.974 47 H 0.203 0.797 48 H 0.069 0.931 49 H 0.152 0.848 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -32.207 1.707 7.218 33.050 hybrid contribution 0.863 0.681 -0.556 1.232 sum -31.344 2.388 6.661 32.133 Atomic orbital electron populations 1.22839 0.79994 1.03107 1.00810 1.88032 1.20977 1.28598 1.95564 1.23097 0.93295 0.84986 1.02137 1.21651 0.93314 1.00216 0.84949 1.48297 1.66175 1.06785 1.13429 1.22041 1.03007 0.94144 0.81392 1.22129 1.00040 0.95941 0.94035 0.82881 1.20341 0.85292 0.80867 0.81341 1.90762 1.45739 1.32052 1.76779 1.48551 1.27411 1.35756 1.22226 1.22769 0.94286 0.89855 0.96238 1.22802 0.93727 1.04657 0.94445 1.22708 0.98469 0.97892 0.97412 1.21627 0.86194 1.00116 0.89197 0.92048 1.20953 0.87495 0.97100 0.91817 1.42423 1.01678 1.86711 1.08578 1.18940 0.83017 1.37127 0.98027 0.93616 1.25626 0.94682 1.02139 1.03101 1.69912 0.99853 1.55668 1.37821 0.85315 0.78098 0.78596 0.79414 1.19343 1.22153 1.17550 1.22302 1.04201 0.98839 0.92289 1.21024 0.75751 0.82565 0.90087 1.90705 1.52866 1.50496 1.50105 0.89898 0.93057 0.93042 0.90347 0.91553 0.91095 0.85809 0.90955 0.86975 0.90004 0.86916 0.87167 0.89369 0.89649 0.90706 0.96031 0.97390 0.79745 0.93146 0.84794 0.88946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 113.37 1.25 1.60 16 2 O -0.41 -8.03 10.27 -148.98 -1.53 -9.56 16 3 C 0.04 0.54 6.28 71.98 0.45 0.99 16 4 C 0.12 1.85 6.33 86.38 0.55 2.40 16 5 N -0.61 -11.78 2.90 -817.90 -2.37 -14.15 16 6 C 0.12 1.94 6.73 86.83 0.58 2.52 16 7 C -0.10 -1.58 2.81 -10.48 -0.03 -1.61 16 8 H 0.15 1.23 7.52 -2.39 -0.02 1.22 16 9 C 0.53 13.34 6.80 87.65 0.60 13.94 16 10 O -0.57 -20.47 14.65 -3.02 -0.04 -20.51 16 11 N -0.61 -13.83 3.06 -788.07 -2.42 -16.25 16 12 C 0.09 1.12 6.34 86.86 0.55 1.67 16 13 C -0.12 -1.43 7.08 31.99 0.23 -1.20 16 14 C -0.13 -2.78 6.11 31.78 0.19 -2.59 16 15 C 0.13 3.96 2.92 45.35 0.13 4.09 16 16 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 17 C 0.15 6.40 5.66 86.38 0.49 6.89 16 18 N -0.75 -36.64 5.24 -343.44 -1.80 -38.44 16 19 C -0.24 -14.49 10.47 84.03 0.88 -13.61 16 20 H 0.05 3.08 8.06 -2.91 -0.02 3.05 16 21 C -0.06 -3.89 5.50 84.86 0.47 -3.43 16 22 N -0.98 -64.75 13.97 21.65 0.30 -64.45 16 23 Si 0.96 45.90 27.70 68.60 1.90 47.80 16 24 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 25 H -0.29 -14.28 7.11 99.48 0.71 -13.58 16 26 H -0.25 -10.88 6.60 99.48 0.66 -10.23 16 27 C -0.14 -2.51 6.06 30.61 0.19 -2.32 16 28 C 0.52 12.69 7.72 87.92 0.68 13.37 16 29 O -0.56 -18.67 17.49 -3.03 -0.05 -18.73 16 30 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 35 H 0.07 1.40 7.92 -2.39 -0.02 1.39 16 36 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.07 1.60 6.92 -2.39 -0.02 1.58 16 38 H 0.11 1.20 8.14 -2.38 -0.02 1.18 16 39 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.11 0.64 7.35 -2.38 -0.02 0.62 16 41 H 0.11 0.85 8.14 -2.38 -0.02 0.83 16 42 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 44 H 0.07 1.83 7.76 -2.39 -0.02 1.81 16 45 H 0.02 0.91 8.02 -2.39 -0.02 0.89 16 46 H 0.01 0.39 6.87 -2.39 -0.02 0.37 16 47 H 0.37 16.64 5.44 -92.71 -0.50 16.13 16 48 H 0.26 16.14 8.31 -92.71 -0.77 15.37 16 49 H 0.13 1.76 8.14 -2.39 -0.02 1.74 16 50 H 0.09 2.08 7.89 -2.39 -0.02 2.06 16 Total: -1.00 -90.21 401.84 1.57 -88.64 By element: Atomic # 1 Polarization: 22.58 SS G_CDS: 0.38 Total: 22.96 kcal Atomic # 6 Polarization: 15.49 SS G_CDS: 7.20 Total: 22.69 kcal Atomic # 7 Polarization: -127.00 SS G_CDS: -6.28 Total: -133.29 kcal Atomic # 8 Polarization: -47.17 SS G_CDS: -1.63 Total: -48.80 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 1.90 Total: 47.80 kcal Total: -90.21 1.57 -88.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499900209.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.854 kcal (2) G-P(sol) polarization free energy of solvation -90.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds