Wall clock time and date at job start Sat Apr 11 2020 05:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42896 * 113.99847 * 2 1 4 4 C 1.52999 * 109.46789 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.47445 * 65.00085 * 4 3 2 6 6 C 1.46761 * 124.35257 * 89.99593 * 5 4 3 7 7 C 1.54479 * 105.47763 * 197.01849 * 6 5 4 8 8 H 1.08997 * 110.96850 * 92.69863 * 7 6 5 9 9 C 1.50691 * 110.97120 * 216.42801 * 7 6 5 10 10 O 1.21281 * 120.00509 * 0.02562 * 9 7 6 11 11 N 1.34779 * 119.99941 * 179.97438 * 9 7 6 12 12 C 1.47422 * 125.64615 * 355.04560 * 11 9 7 13 13 C 1.54914 * 104.83105 * 204.09099 * 12 11 9 14 14 C 1.55158 * 101.58122 * 322.99225 * 13 12 11 15 15 C 1.47021 * 125.64986 * 174.74120 * 11 9 7 16 16 H 1.08999 * 109.88390 * 59.55560 * 15 11 9 17 17 C 1.53007 * 109.87998 * 298.39654 * 15 11 9 18 18 N 1.46498 * 109.47240 * 174.63294 * 17 15 11 19 19 C 1.36932 * 119.99957 * 184.92442 * 18 17 15 20 20 H 1.07999 * 120.00345 * 359.97438 * 19 18 17 21 21 C 1.38819 * 120.00022 * 179.97438 * 19 18 17 22 22 N 1.31618 * 119.99688 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00242 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.47278 * 59.99634 * 23 21 19 25 25 H 1.48498 * 109.47417 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.46796 * 299.99887 * 23 21 19 27 27 C 1.54627 * 101.76104 * 334.58681 * 7 6 5 28 28 C 1.34421 * 124.34623 * 269.70003 * 5 4 3 29 29 O 1.21278 * 124.94408 * 359.57552 * 28 5 4 30 30 H 1.09003 * 109.46911 * 299.99972 * 1 2 3 31 31 H 1.09001 * 109.47082 * 59.99768 * 1 2 3 32 32 H 1.09003 * 109.47249 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47043 * 300.00235 * 3 2 1 34 34 H 1.08991 * 109.47564 * 60.00134 * 3 2 1 35 35 H 1.09000 * 109.47098 * 184.99589 * 4 3 2 36 36 H 1.09000 * 109.47083 * 304.99825 * 4 3 2 37 37 H 1.09002 * 110.24782 * 316.02272 * 6 5 4 38 38 H 1.09008 * 110.24164 * 77.92860 * 6 5 4 39 39 H 1.08993 * 110.36894 * 322.93127 * 12 11 9 40 40 H 1.08999 * 110.36489 * 85.14767 * 12 11 9 41 41 H 1.09003 * 111.00557 * 81.06914 * 13 12 11 42 42 H 1.09002 * 111.00611 * 204.88011 * 13 12 11 43 43 H 1.09003 * 110.72164 * 153.86578 * 14 13 12 44 44 H 1.09001 * 110.72036 * 276.96226 * 14 13 12 45 45 H 1.09000 * 109.46811 * 294.63213 * 17 15 11 46 46 H 1.09000 * 109.47390 * 54.62550 * 17 15 11 47 47 H 0.97003 * 119.99834 * 4.91503 * 18 17 15 48 48 H 0.96998 * 120.00091 * 180.02562 * 22 21 19 49 49 H 1.09004 * 110.48620 * 143.47455 * 27 7 6 50 50 H 1.08994 * 110.48774 * 266.11668 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9757 0.5643 -1.2527 6 6 4.3110 1.3085 -2.4724 7 6 4.2867 0.2654 -3.6116 8 1 3.3057 0.2278 -4.0851 9 6 5.3623 0.5511 -4.6276 10 8 6.1005 1.5017 -4.4783 11 7 5.5046 -0.2503 -5.7019 12 6 4.7503 -1.4917 -5.9536 13 6 5.6551 -2.3207 -6.8990 14 6 6.2673 -1.2121 -7.7955 15 6 6.4332 -0.0280 -6.8198 16 1 7.4579 0.0043 -6.4497 17 6 6.0909 1.2848 -7.5273 18 7 7.0966 1.5618 -8.5560 19 6 7.0551 2.7386 -9.2547 20 1 6.2808 3.4625 -9.0478 21 6 8.0083 3.0013 -10.2291 22 7 8.9523 2.1193 -10.4809 23 14 7.9513 4.6064 -11.1828 24 1 8.0780 5.7471 -10.2403 25 1 9.0714 4.6434 -12.1571 26 1 6.6596 4.7052 -11.9088 27 6 4.5819 -1.0449 -2.8455 28 6 4.1299 -0.7591 -1.4303 29 8 3.9326 -1.6016 -0.5805 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.6885 1.8463 -0.8900 34 1 1.6887 1.8464 0.8899 35 1 3.9785 2.1764 0.0888 36 1 3.8514 0.5681 0.8409 37 1 3.5689 2.0854 -2.6564 38 1 5.3040 1.7496 -2.3842 39 1 4.5829 -2.0296 -5.0206 40 1 3.7995 -1.2665 -6.4367 41 1 6.4308 -2.8429 -6.3389 42 1 5.0648 -3.0206 -7.4904 43 1 7.2328 -1.5262 -8.1921 44 1 5.5859 -0.9508 -8.6052 45 1 5.1087 1.2014 -7.9925 46 1 6.0809 2.0973 -6.8008 47 1 7.7919 0.9115 -8.7420 48 1 9.6186 2.3030 -11.1615 49 1 4.0133 -1.8719 -3.2709 50 1 5.6492 -1.2653 -2.8638 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001499900210.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:10 Heat of formation + Delta-G solvation = -88.823907 kcal Electronic energy + Delta-G solvation = -30407.021840 eV Core-core repulsion = 26242.093455 eV Total energy + Delta-G solvation = -4164.928385 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.08121 -39.73811 -38.09834 -37.58010 -36.23284 -34.57792 -33.65660 -31.64761 -31.33754 -29.63116 -28.61974 -27.93519 -26.63084 -25.21300 -24.39630 -23.20062 -22.39904 -21.93628 -20.56528 -19.66102 -18.92026 -17.61695 -17.28205 -16.99272 -16.81492 -16.48202 -16.00017 -15.73657 -15.52985 -15.09607 -14.66126 -14.50422 -14.29774 -13.97747 -13.77675 -13.50198 -13.35801 -13.19111 -13.09671 -13.01993 -12.73225 -12.69427 -12.36621 -12.27444 -12.10130 -11.75422 -11.56860 -11.54423 -11.48685 -11.14826 -10.91748 -10.81924 -10.57324 -10.43258 -10.13649 -10.06864 -9.99618 -9.75130 -9.60167 -8.92943 -8.84073 -8.51005 -6.90210 -5.74337 -3.02696 2.43598 2.57187 2.67980 2.98397 3.44904 3.46091 3.50214 3.51538 3.97638 4.10275 4.36618 4.56111 4.63584 4.64152 4.65834 4.72306 4.77910 4.89551 4.94135 4.99026 5.00839 5.01638 5.06294 5.22346 5.23847 5.35113 5.35164 5.39877 5.46625 5.51077 5.56734 5.60323 5.67357 5.78561 5.90913 6.01968 6.04400 6.15598 6.25105 6.39568 6.50195 6.80047 6.80913 6.91350 6.93206 7.58485 7.72433 8.02621 8.18396 8.44583 9.55499 10.11780 10.47251 11.48612 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017035 B = 0.002386 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.235646 B =11732.064598 C =12654.316393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.376 6.376 3 C 0.040 3.960 4 C 0.129 3.871 5 N -0.618 5.618 6 C 0.117 3.883 7 C -0.118 4.118 8 H 0.115 0.885 9 C 0.537 3.463 10 O -0.523 6.523 11 N -0.608 5.608 12 C 0.093 3.907 13 C -0.134 4.134 14 C -0.122 4.122 15 C 0.130 3.870 16 H 0.078 0.922 17 C 0.148 3.852 18 N -0.728 5.728 19 C -0.235 4.235 20 H 0.069 0.931 21 C -0.014 4.014 22 N -0.935 5.935 23 Si 0.908 3.092 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 C -0.145 4.145 28 C 0.526 3.474 29 O -0.518 6.518 30 H 0.039 0.961 31 H 0.039 0.961 32 H 0.085 0.915 33 H 0.052 0.948 34 H 0.059 0.941 35 H 0.097 0.903 36 H 0.091 0.909 37 H 0.083 0.917 38 H 0.095 0.905 39 H 0.077 0.923 40 H 0.070 0.930 41 H 0.074 0.926 42 H 0.082 0.918 43 H 0.084 0.916 44 H 0.082 0.918 45 H 0.015 0.985 46 H 0.035 0.965 47 H 0.383 0.617 48 H 0.255 0.745 49 H 0.110 0.890 50 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.855 -8.002 19.072 26.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.295 6.295 3 C -0.038 4.038 4 C 0.007 3.993 5 N -0.353 5.353 6 C -0.007 4.007 7 C -0.140 4.140 8 H 0.133 0.867 9 C 0.324 3.676 10 O -0.398 6.398 11 N -0.342 5.342 12 C -0.030 4.030 13 C -0.172 4.172 14 C -0.160 4.160 15 C 0.027 3.973 16 H 0.096 0.904 17 C 0.019 3.981 18 N -0.372 5.372 19 C -0.367 4.367 20 H 0.087 0.913 21 C -0.210 4.210 22 N -0.583 5.583 23 Si 0.739 3.261 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.213 1.213 27 C -0.185 4.185 28 C 0.313 3.687 29 O -0.393 6.393 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.103 0.897 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.115 0.885 36 H 0.110 0.890 37 H 0.101 0.899 38 H 0.113 0.887 39 H 0.095 0.905 40 H 0.088 0.912 41 H 0.093 0.907 42 H 0.101 0.899 43 H 0.103 0.897 44 H 0.101 0.899 45 H 0.032 0.968 46 H 0.053 0.947 47 H 0.217 0.783 48 H 0.065 0.935 49 H 0.128 0.872 50 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -15.518 -7.852 19.692 26.272 hybrid contribution -0.138 1.055 -0.801 1.332 sum -15.655 -6.797 18.890 25.459 Atomic orbital electron populations 1.22732 0.81355 1.02759 0.99657 1.88059 1.19274 1.26848 1.95292 1.23023 0.94471 0.85680 1.00578 1.21414 0.92090 0.99477 0.86353 1.48185 1.67208 1.07329 1.12571 1.21997 1.03268 0.93688 0.81704 1.22172 1.00193 0.96366 0.95244 0.86695 1.19616 0.84691 0.82228 0.81055 1.90773 1.44767 1.28996 1.75282 1.48467 1.40515 1.24477 1.20723 1.22477 0.95556 0.85069 0.99861 1.22793 0.99161 0.97520 0.97719 1.22682 1.02755 0.93235 0.97322 1.21856 0.93319 0.96593 0.85491 0.90371 1.20925 0.92716 0.93321 0.91101 1.42187 1.32385 1.21057 1.41600 1.19156 1.09723 0.94985 1.12812 0.91336 1.24725 0.97866 0.98432 0.99986 1.69643 1.17481 1.35232 1.35981 0.86250 0.76865 0.83402 0.79569 1.21275 1.21686 1.21315 1.22394 1.04696 0.97863 0.93547 1.20613 0.76246 0.82201 0.89616 1.90731 1.50814 1.49169 1.48606 0.94263 0.94271 0.89685 0.92992 0.92287 0.88515 0.89024 0.89906 0.88711 0.90513 0.91187 0.90698 0.89898 0.89720 0.89917 0.96759 0.94710 0.78292 0.93492 0.87193 0.87413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.34 16 2 O -0.38 -3.93 10.32 -35.23 -0.36 -4.30 16 3 C 0.04 0.31 6.28 37.16 0.23 0.54 16 4 C 0.13 1.03 6.33 -4.04 -0.03 1.01 16 5 N -0.62 -6.13 2.90 -172.41 -0.50 -6.63 16 6 C 0.12 1.09 6.71 -3.12 -0.02 1.07 16 7 C -0.12 -1.13 2.96 -90.14 -0.27 -1.40 16 8 H 0.12 0.90 8.14 -51.93 -0.42 0.48 16 9 C 0.54 7.35 6.84 -10.99 -0.08 7.27 16 10 O -0.52 -9.38 14.69 5.56 0.08 -9.30 16 11 N -0.61 -8.03 3.06 -163.02 -0.50 -8.53 16 12 C 0.09 0.87 6.60 -2.53 -0.02 0.86 16 13 C -0.13 -1.28 7.09 -24.58 -0.17 -1.45 16 14 C -0.12 -1.66 6.12 -24.89 -0.15 -1.82 16 15 C 0.13 2.14 2.91 -66.95 -0.20 1.95 16 16 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 17 C 0.15 3.10 5.67 -4.04 -0.02 3.08 16 18 N -0.73 -18.66 5.46 -59.91 -0.33 -18.99 16 19 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16 20 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 21 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 22 N -0.93 -28.32 13.06 55.49 0.72 -27.60 16 23 Si 0.91 22.69 29.55 -169.99 -5.02 17.67 16 24 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 25 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 26 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 27 C -0.14 -1.35 5.19 -26.74 -0.14 -1.48 16 28 C 0.53 6.27 7.74 -10.86 -0.08 6.19 16 29 O -0.52 -8.07 17.53 5.56 0.10 -7.97 16 30 H 0.04 0.23 8.14 -51.93 -0.42 -0.20 16 31 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.09 0.84 7.92 -51.93 -0.41 0.43 16 37 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.09 1.04 6.97 -51.92 -0.36 0.68 16 39 H 0.08 0.55 5.32 -51.93 -0.28 0.27 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 44 H 0.08 1.22 7.76 -51.93 -0.40 0.81 16 45 H 0.01 0.31 8.02 -51.93 -0.42 -0.11 16 46 H 0.03 0.81 6.88 -51.93 -0.36 0.46 16 47 H 0.38 10.14 7.47 -40.82 -0.30 9.83 16 48 H 0.26 7.49 8.31 -40.82 -0.34 7.16 16 49 H 0.11 0.83 6.79 -51.93 -0.35 0.47 16 50 H 0.11 1.03 7.89 -51.93 -0.41 0.62 16 LS Contribution 401.85 15.07 6.06 6.06 Total: -1.00 -36.86 401.85 -8.16 -45.03 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -8.34 Total: 4.81 kcal Atomic # 6 Polarization: 9.84 SS G_CDS: -0.07 Total: 9.76 kcal Atomic # 7 Polarization: -61.15 SS G_CDS: -0.60 Total: -61.75 kcal Atomic # 8 Polarization: -21.38 SS G_CDS: -0.18 Total: -21.57 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.67 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -36.86 -8.16 -45.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499900210.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.797 kcal (2) G-P(sol) polarization free energy of solvation -36.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds