Wall clock time and date at job start Sat Apr 11 2020 05:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42896 * 113.99847 * 2 1 4 4 C 1.52999 * 109.46789 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.47445 * 65.00085 * 4 3 2 6 6 C 1.46761 * 124.35257 * 89.99593 * 5 4 3 7 7 C 1.54479 * 105.47763 * 197.01849 * 6 5 4 8 8 H 1.08997 * 110.96850 * 92.69863 * 7 6 5 9 9 C 1.50691 * 110.97120 * 216.42801 * 7 6 5 10 10 O 1.21281 * 120.00509 * 0.02562 * 9 7 6 11 11 N 1.34779 * 119.99941 * 179.97438 * 9 7 6 12 12 C 1.47422 * 125.64615 * 355.04560 * 11 9 7 13 13 C 1.54914 * 104.83105 * 204.09099 * 12 11 9 14 14 C 1.55158 * 101.58122 * 322.99225 * 13 12 11 15 15 C 1.47021 * 125.64986 * 174.74120 * 11 9 7 16 16 H 1.08999 * 109.88390 * 59.55560 * 15 11 9 17 17 C 1.53007 * 109.87998 * 298.39654 * 15 11 9 18 18 N 1.46498 * 109.47240 * 174.63294 * 17 15 11 19 19 C 1.36932 * 119.99957 * 184.92442 * 18 17 15 20 20 H 1.07999 * 120.00345 * 359.97438 * 19 18 17 21 21 C 1.38819 * 120.00022 * 179.97438 * 19 18 17 22 22 N 1.31618 * 119.99688 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00242 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.47278 * 59.99634 * 23 21 19 25 25 H 1.48498 * 109.47417 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.46796 * 299.99887 * 23 21 19 27 27 C 1.54627 * 101.76104 * 334.58681 * 7 6 5 28 28 C 1.34421 * 124.34623 * 269.70003 * 5 4 3 29 29 O 1.21278 * 124.94408 * 359.57552 * 28 5 4 30 30 H 1.09003 * 109.46911 * 299.99972 * 1 2 3 31 31 H 1.09001 * 109.47082 * 59.99768 * 1 2 3 32 32 H 1.09003 * 109.47249 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47043 * 300.00235 * 3 2 1 34 34 H 1.08991 * 109.47564 * 60.00134 * 3 2 1 35 35 H 1.09000 * 109.47098 * 184.99589 * 4 3 2 36 36 H 1.09000 * 109.47083 * 304.99825 * 4 3 2 37 37 H 1.09002 * 110.24782 * 316.02272 * 6 5 4 38 38 H 1.09008 * 110.24164 * 77.92860 * 6 5 4 39 39 H 1.08993 * 110.36894 * 322.93127 * 12 11 9 40 40 H 1.08999 * 110.36489 * 85.14767 * 12 11 9 41 41 H 1.09003 * 111.00557 * 81.06914 * 13 12 11 42 42 H 1.09002 * 111.00611 * 204.88011 * 13 12 11 43 43 H 1.09003 * 110.72164 * 153.86578 * 14 13 12 44 44 H 1.09001 * 110.72036 * 276.96226 * 14 13 12 45 45 H 1.09000 * 109.46811 * 294.63213 * 17 15 11 46 46 H 1.09000 * 109.47390 * 54.62550 * 17 15 11 47 47 H 0.97003 * 119.99834 * 4.91503 * 18 17 15 48 48 H 0.96998 * 120.00091 * 180.02562 * 22 21 19 49 49 H 1.09004 * 110.48620 * 143.47455 * 27 7 6 50 50 H 1.08994 * 110.48774 * 266.11668 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9757 0.5643 -1.2527 6 6 4.3110 1.3085 -2.4724 7 6 4.2867 0.2654 -3.6116 8 1 3.3057 0.2278 -4.0851 9 6 5.3623 0.5511 -4.6276 10 8 6.1005 1.5017 -4.4783 11 7 5.5046 -0.2503 -5.7019 12 6 4.7503 -1.4917 -5.9536 13 6 5.6551 -2.3207 -6.8990 14 6 6.2673 -1.2121 -7.7955 15 6 6.4332 -0.0280 -6.8198 16 1 7.4579 0.0043 -6.4497 17 6 6.0909 1.2848 -7.5273 18 7 7.0966 1.5618 -8.5560 19 6 7.0551 2.7386 -9.2547 20 1 6.2808 3.4625 -9.0478 21 6 8.0083 3.0013 -10.2291 22 7 8.9523 2.1193 -10.4809 23 14 7.9513 4.6064 -11.1828 24 1 8.0780 5.7471 -10.2403 25 1 9.0714 4.6434 -12.1571 26 1 6.6596 4.7052 -11.9088 27 6 4.5819 -1.0449 -2.8455 28 6 4.1299 -0.7591 -1.4303 29 8 3.9326 -1.6016 -0.5805 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.6885 1.8463 -0.8900 34 1 1.6887 1.8464 0.8899 35 1 3.9785 2.1764 0.0888 36 1 3.8514 0.5681 0.8409 37 1 3.5689 2.0854 -2.6564 38 1 5.3040 1.7496 -2.3842 39 1 4.5829 -2.0296 -5.0206 40 1 3.7995 -1.2665 -6.4367 41 1 6.4308 -2.8429 -6.3389 42 1 5.0648 -3.0206 -7.4904 43 1 7.2328 -1.5262 -8.1921 44 1 5.5859 -0.9508 -8.6052 45 1 5.1087 1.2014 -7.9925 46 1 6.0809 2.0973 -6.8008 47 1 7.7919 0.9115 -8.7420 48 1 9.6186 2.3030 -11.1615 49 1 4.0133 -1.8719 -3.2709 50 1 5.6492 -1.2653 -2.8638 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001499900210.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:09 Heat of formation + Delta-G solvation = -115.812686 kcal Electronic energy + Delta-G solvation = -30408.192161 eV Core-core repulsion = 26242.093455 eV Total energy + Delta-G solvation = -4166.098706 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.00730 -40.75944 -38.80166 -38.67403 -37.19728 -36.41888 -34.53700 -33.36706 -32.49560 -30.60868 -29.89840 -28.75564 -27.19992 -26.72847 -25.57214 -24.31550 -23.71322 -22.87819 -21.68097 -20.54945 -20.07304 -19.14281 -18.36344 -18.01671 -17.69186 -17.47160 -16.90185 -16.55350 -16.38174 -16.31805 -15.96727 -15.65057 -15.47067 -15.10093 -15.05664 -14.92256 -14.65159 -14.22011 -14.06969 -13.95942 -13.73888 -13.61375 -13.57704 -13.05176 -13.00260 -12.89471 -12.74318 -12.70846 -12.51279 -12.34312 -12.23015 -12.07612 -11.98925 -11.88677 -11.73763 -11.54375 -11.14996 -10.94457 -10.70929 -10.58442 -9.73876 -9.65857 -9.03732 -7.97015 -5.26534 1.45332 1.49321 1.49436 1.55485 1.59678 1.77690 2.06999 2.55655 2.90652 3.11914 3.31540 3.35688 3.52674 3.67649 3.83587 3.87451 3.97169 4.07426 4.12071 4.14966 4.17187 4.30529 4.37676 4.38985 4.43149 4.50233 4.52970 4.54862 4.57280 4.58560 4.69538 4.80561 4.84835 4.85410 4.87248 4.94739 4.97064 5.06429 5.17873 5.18224 5.37509 5.43474 5.48154 5.51887 6.08007 6.24465 6.28624 6.54861 7.10070 7.16916 7.31171 8.03662 8.29915 9.26010 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017035 B = 0.002386 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.235646 B =11732.064598 C =12654.316393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.411 6.411 3 C 0.040 3.960 4 C 0.121 3.879 5 N -0.614 5.614 6 C 0.118 3.882 7 C -0.103 4.103 8 H 0.145 0.855 9 C 0.533 3.467 10 O -0.574 6.574 11 N -0.606 5.606 12 C 0.089 3.911 13 C -0.121 4.121 14 C -0.120 4.120 15 C 0.137 3.863 16 H 0.050 0.950 17 C 0.154 3.846 18 N -0.738 5.738 19 C -0.249 4.249 20 H 0.069 0.931 21 C -0.072 4.072 22 N -0.966 5.966 23 Si 0.975 3.025 24 H -0.282 1.282 25 H -0.291 1.291 26 H -0.274 1.274 27 C -0.136 4.136 28 C 0.518 3.482 29 O -0.561 6.561 30 H 0.052 0.948 31 H 0.048 0.952 32 H 0.084 0.916 33 H 0.062 0.938 34 H 0.079 0.921 35 H 0.123 0.877 36 H 0.075 0.925 37 H 0.104 0.896 38 H 0.076 0.924 39 H 0.107 0.893 40 H 0.089 0.911 41 H 0.083 0.917 42 H 0.111 0.889 43 H 0.074 0.926 44 H 0.072 0.928 45 H 0.020 0.980 46 H 0.008 0.992 47 H 0.376 0.624 48 H 0.253 0.747 49 H 0.136 0.864 50 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.146 -8.393 19.188 27.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.330 6.330 3 C -0.037 4.037 4 C 0.000 4.000 5 N -0.347 5.347 6 C -0.005 4.005 7 C -0.124 4.124 8 H 0.163 0.837 9 C 0.322 3.678 10 O -0.453 6.453 11 N -0.339 5.339 12 C -0.032 4.032 13 C -0.158 4.158 14 C -0.158 4.158 15 C 0.033 3.967 16 H 0.068 0.932 17 C 0.027 3.973 18 N -0.381 5.381 19 C -0.381 4.381 20 H 0.087 0.913 21 C -0.264 4.264 22 N -0.616 5.616 23 Si 0.804 3.196 24 H -0.208 1.208 25 H -0.217 1.217 26 H -0.200 1.200 27 C -0.176 4.176 28 C 0.307 3.693 29 O -0.440 6.440 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.103 0.897 33 H 0.080 0.920 34 H 0.097 0.903 35 H 0.141 0.859 36 H 0.093 0.907 37 H 0.122 0.878 38 H 0.095 0.905 39 H 0.125 0.875 40 H 0.107 0.893 41 H 0.101 0.899 42 H 0.130 0.870 43 H 0.093 0.907 44 H 0.091 0.909 45 H 0.038 0.962 46 H 0.026 0.974 47 H 0.209 0.791 48 H 0.062 0.938 49 H 0.154 0.846 50 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -17.864 -8.245 19.823 27.929 hybrid contribution 0.575 1.218 -0.784 1.558 sum -17.289 -7.027 19.039 26.660 Atomic orbital electron populations 1.22841 0.80041 1.03154 1.00732 1.88017 1.20918 1.28532 1.95554 1.23107 0.93592 0.85003 1.01992 1.21642 0.93065 1.00305 0.85014 1.48306 1.66184 1.06957 1.13245 1.21991 1.03013 0.94034 0.81441 1.22115 0.99689 0.96517 0.94091 0.83739 1.20342 0.84741 0.81308 0.81387 1.90755 1.46812 1.31284 1.76496 1.48557 1.40110 1.25738 1.19520 1.22812 0.95533 0.83278 1.01571 1.22815 0.99472 0.96520 0.97039 1.22590 1.02485 0.93683 0.97027 1.21533 0.92750 0.95536 0.86883 0.93184 1.20934 0.91747 0.95001 0.89636 1.42336 1.33145 1.20243 1.42372 1.19514 1.09649 0.95887 1.13019 0.91314 1.25570 0.97723 1.01920 1.01236 1.69796 1.18168 1.37060 1.36615 0.85194 0.77119 0.79279 0.78050 1.20809 1.21719 1.20030 1.22391 1.04870 0.98385 0.91973 1.21009 0.75734 0.82421 0.90151 1.90708 1.52929 1.50332 1.50030 0.92987 0.93329 0.89747 0.92002 0.90300 0.85891 0.90668 0.87784 0.90538 0.87452 0.89326 0.89880 0.87019 0.90722 0.90906 0.96198 0.97396 0.79142 0.93815 0.84577 0.87709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 113.37 1.25 1.61 16 2 O -0.41 -8.05 10.32 -148.98 -1.54 -9.59 16 3 C 0.04 0.53 6.28 71.98 0.45 0.99 16 4 C 0.12 1.80 6.33 86.38 0.55 2.35 16 5 N -0.61 -11.35 2.90 -817.97 -2.37 -13.71 16 6 C 0.12 2.03 6.71 86.83 0.58 2.61 16 7 C -0.10 -1.73 2.96 -10.49 -0.03 -1.76 16 8 H 0.14 1.66 8.14 -2.39 -0.02 1.64 16 9 C 0.53 14.12 6.84 87.65 0.60 14.72 16 10 O -0.57 -21.14 14.69 -3.03 -0.04 -21.19 16 11 N -0.61 -15.21 3.06 -788.05 -2.41 -17.62 16 12 C 0.09 1.34 6.60 86.86 0.57 1.91 16 13 C -0.12 -1.92 7.09 31.99 0.23 -1.70 16 14 C -0.12 -3.18 6.12 31.78 0.19 -2.98 16 15 C 0.14 4.57 2.91 45.35 0.13 4.70 16 16 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 17 C 0.15 6.64 5.67 86.38 0.49 7.13 16 18 N -0.74 -38.97 5.46 -343.44 -1.88 -40.85 16 19 C -0.25 -14.45 9.99 84.04 0.84 -13.61 16 20 H 0.07 3.89 7.83 -2.91 -0.02 3.87 16 21 C -0.07 -4.22 5.50 84.86 0.47 -3.75 16 22 N -0.97 -59.57 13.06 21.65 0.28 -59.29 16 23 Si 0.98 46.89 29.55 68.60 2.03 48.92 16 24 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 25 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 26 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 27 C -0.14 -2.20 5.19 30.59 0.16 -2.04 16 28 C 0.52 11.74 7.74 87.90 0.68 12.42 16 29 O -0.56 -17.30 17.53 -3.02 -0.05 -17.36 16 30 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.07 1.38 7.92 -2.39 -0.02 1.36 16 37 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.08 1.66 6.97 -2.38 -0.02 1.64 16 39 H 0.11 1.01 5.32 -2.39 -0.01 1.00 16 40 H 0.09 1.09 8.14 -2.39 -0.02 1.08 16 41 H 0.08 1.23 8.14 -2.39 -0.02 1.22 16 42 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 44 H 0.07 2.08 7.76 -2.39 -0.02 2.07 16 45 H 0.02 0.84 8.02 -2.39 -0.02 0.83 16 46 H 0.01 0.39 6.88 -2.39 -0.02 0.37 16 47 H 0.38 20.66 7.47 -92.71 -0.69 19.97 16 48 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 49 H 0.14 1.49 6.79 -2.38 -0.02 1.48 16 50 H 0.10 1.82 7.89 -2.39 -0.02 1.80 16 Total: -1.00 -83.52 401.85 1.42 -82.10 By element: Atomic # 1 Polarization: 25.75 SS G_CDS: 0.24 Total: 26.00 kcal Atomic # 6 Polarization: 15.44 SS G_CDS: 7.16 Total: 22.60 kcal Atomic # 7 Polarization: -125.10 SS G_CDS: -6.38 Total: -131.47 kcal Atomic # 8 Polarization: -46.50 SS G_CDS: -1.64 Total: -48.13 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 2.03 Total: 48.92 kcal Total: -83.52 1.42 -82.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499900210.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.713 kcal (2) G-P(sol) polarization free energy of solvation -83.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds