Wall clock time and date at job start Sat Apr 11 2020 05:47:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34767 * 120.00610 * 2 1 4 4 O 1.21283 * 119.99877 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00333 * 179.97438 * 3 2 1 6 6 C 1.53003 * 109.47154 * 179.97438 * 5 3 2 7 7 C 1.53001 * 109.47120 * 180.02562 * 6 5 3 8 8 C 1.53003 * 109.47120 * 179.97438 * 7 6 5 9 9 C 1.50699 * 109.46727 * 180.02562 * 8 7 6 10 10 O 1.21283 * 120.00216 * 359.97438 * 9 8 7 11 11 N 1.34783 * 119.99663 * 180.02562 * 9 8 7 12 12 C 1.46497 * 119.99974 * 179.97438 * 11 9 8 13 13 H 1.09007 * 110.77177 * 328.53359 * 12 11 9 14 14 C 1.55063 * 111.04728 * 92.18716 * 12 11 9 15 15 O 1.44599 * 103.66842 * 81.72173 * 14 12 11 16 16 C 1.42846 * 106.73521 * 39.08822 * 15 14 12 17 17 C 1.52653 * 115.96585 * 202.47029 * 16 15 14 18 18 N 1.47224 * 87.78043 * 218.41234 * 17 16 15 19 19 C 1.36931 * 135.96376 * 206.38030 * 18 17 16 20 20 H 1.08002 * 120.00438 * 0.02562 * 19 18 17 21 21 C 1.38817 * 119.99680 * 179.72312 * 19 18 17 22 22 N 1.31614 * 119.99888 * 0.27479 * 21 19 18 23 23 Si 1.86803 * 119.99862 * 180.27671 * 21 19 18 24 24 H 1.48498 * 109.47174 * 90.00121 * 23 21 19 25 25 H 1.48501 * 109.47062 * 210.00072 * 23 21 19 26 26 H 1.48504 * 109.46913 * 329.99871 * 23 21 19 27 27 C 1.47220 * 88.06760 * 26.63433 * 18 17 16 28 28 C 1.53317 * 108.32613 * 334.30564 * 16 15 14 29 29 H 1.08998 * 109.46554 * 299.99925 * 1 2 3 30 30 H 1.08994 * 109.46625 * 59.99967 * 1 2 3 31 31 H 1.08999 * 109.47010 * 180.02562 * 1 2 3 32 32 H 0.97007 * 119.99455 * 180.02562 * 2 1 3 33 33 H 1.09006 * 109.46776 * 60.00020 * 5 3 2 34 34 H 1.08996 * 109.47185 * 300.00482 * 5 3 2 35 35 H 1.08994 * 109.46844 * 60.00228 * 6 5 3 36 36 H 1.08998 * 109.46847 * 299.99958 * 6 5 3 37 37 H 1.09006 * 109.46952 * 59.99968 * 7 6 5 38 38 H 1.08996 * 109.47043 * 300.00409 * 7 6 5 39 39 H 1.08994 * 109.46844 * 60.00034 * 8 7 6 40 40 H 1.08998 * 109.46847 * 299.99764 * 8 7 6 41 41 H 0.96994 * 119.99511 * 359.97438 * 11 9 8 42 42 H 1.09000 * 110.58523 * 200.26796 * 14 12 11 43 43 H 1.09004 * 110.58359 * 323.17218 * 14 12 11 44 44 H 1.09002 * 113.49461 * 103.68038 * 17 16 15 45 45 H 1.08998 * 113.55945 * 333.15309 * 17 16 15 46 46 H 0.97005 * 119.99715 * 179.97438 * 22 21 19 47 47 H 1.09001 * 113.49518 * 88.09122 * 27 18 17 48 48 H 1.08998 * 113.50705 * 218.63960 * 27 18 17 49 49 H 1.09002 * 110.56619 * 120.19354 * 28 16 15 50 50 H 1.08999 * 110.56481 * 243.04261 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1670 0.0000 4 8 1.5327 2.2174 -0.0005 5 6 3.6460 1.1670 0.0006 6 6 4.1561 2.6095 -0.0002 7 6 5.6861 2.6094 -0.0002 8 6 6.1962 4.0519 -0.0017 9 6 7.7032 4.0517 -0.0023 10 8 8.3095 3.0013 -0.0013 11 7 8.3772 5.2189 -0.0031 12 6 9.8421 5.2188 -0.0032 13 1 10.2287 4.3498 0.5293 14 6 10.3989 5.2731 -1.4494 15 8 10.3329 6.6773 -1.7884 16 6 10.7066 7.4017 -0.6153 17 6 10.2193 8.8463 -0.5383 18 7 11.5162 9.1912 0.0671 19 6 11.9803 10.1628 0.9131 20 1 11.3059 10.9168 1.2914 21 6 13.3164 10.1748 1.2895 22 7 14.1382 9.2556 0.8290 23 14 13.9480 11.4957 2.4497 24 1 13.8142 11.0275 3.8526 25 1 15.3769 11.7720 2.1543 26 1 13.1551 12.7376 2.2645 27 6 12.0968 8.0380 -0.6403 28 6 10.3946 6.5319 0.6081 29 1 -0.3632 0.5138 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.9500 -0.8401 -0.0004 33 1 4.0096 0.6529 -0.8892 34 1 4.0090 0.6533 0.8907 35 1 3.7925 3.1238 0.8893 36 1 3.7931 3.1227 -0.8907 37 1 6.0494 2.0950 -0.8900 38 1 6.0494 2.0959 0.8899 39 1 5.8329 4.5665 0.8878 40 1 5.8329 4.5648 -0.8921 41 1 7.8922 6.0589 -0.0036 42 1 11.4299 4.9204 -1.4766 43 1 9.7742 4.6864 -2.1229 44 1 9.3742 8.9844 0.1361 45 1 10.0595 9.3047 -1.5142 46 1 15.0719 9.2643 1.0918 47 1 12.4479 8.2760 -1.6444 48 1 12.8359 7.4943 -0.0520 49 1 11.3016 6.3361 1.1801 50 1 9.6412 7.0090 1.2349 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001502473038.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:28 Heat of formation + Delta-G solvation = -72.507692 kcal Electronic energy + Delta-G solvation = -28813.298293 eV Core-core repulsion = 24649.077432 eV Total energy + Delta-G solvation = -4164.220861 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.38481 -40.06942 -39.20814 -36.44633 -35.55908 -34.94683 -34.26146 -32.13001 -31.58158 -30.15760 -28.19210 -27.57764 -25.81744 -25.12269 -24.71284 -22.27169 -21.94389 -21.05145 -20.76551 -20.30585 -18.80706 -17.58926 -17.15461 -16.87756 -16.56377 -16.41622 -16.23562 -15.70782 -15.29273 -15.05774 -14.73723 -14.57583 -14.28162 -14.18035 -13.72834 -13.67836 -13.52815 -12.93228 -12.87951 -12.69680 -12.62708 -12.44168 -12.10046 -11.87466 -11.64928 -11.45396 -11.37655 -11.34479 -11.06567 -10.92787 -10.87143 -10.81417 -10.72341 -10.58242 -10.28285 -10.07401 -9.80533 -9.61516 -9.56271 -9.13354 -8.85316 -8.61003 -6.94576 -5.81403 -3.14661 2.24050 2.60598 2.75716 3.16217 3.36729 3.41491 3.43854 4.21662 4.28853 4.44932 4.48301 4.59918 4.61550 4.73659 4.78524 4.93300 5.02316 5.05032 5.07675 5.16202 5.19767 5.27235 5.31601 5.34912 5.41005 5.44254 5.48372 5.51798 5.59939 5.69389 5.87466 5.89744 5.91226 5.96004 6.11164 6.17795 6.29588 6.37047 6.52925 6.58035 6.63041 6.95973 6.98336 7.17067 7.46235 7.50867 7.62409 7.79017 7.91717 8.20517 8.98481 9.64987 10.57413 11.36044 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.026685 B = 0.001586 C = 0.001550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.007410 B =17649.914224 C =18065.274310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.741 5.741 3 C 0.509 3.491 4 O -0.538 6.538 5 C -0.140 4.140 6 C -0.105 4.105 7 C -0.103 4.103 8 C -0.142 4.142 9 C 0.512 3.488 10 O -0.547 6.547 11 N -0.715 5.715 12 C 0.106 3.894 13 H 0.104 0.896 14 C 0.041 3.959 15 O -0.363 6.363 16 C 0.043 3.957 17 C 0.128 3.872 18 N -0.602 5.602 19 C -0.218 4.218 20 H 0.083 0.917 21 C -0.006 4.006 22 N -0.918 5.918 23 Si 0.914 3.086 24 H -0.288 1.288 25 H -0.290 1.290 26 H -0.281 1.281 27 C 0.148 3.852 28 C -0.114 4.114 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.402 0.598 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.094 0.906 40 H 0.095 0.905 41 H 0.404 0.596 42 H 0.069 0.931 43 H 0.086 0.914 44 H 0.043 0.957 45 H 0.041 0.959 46 H 0.254 0.746 47 H 0.032 0.968 48 H 0.074 0.926 49 H 0.095 0.905 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.389 -20.215 -1.881 30.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.393 5.393 3 C 0.296 3.704 4 O -0.415 6.415 5 C -0.180 4.180 6 C -0.143 4.143 7 C -0.141 4.141 8 C -0.182 4.182 9 C 0.299 3.701 10 O -0.425 6.425 11 N -0.366 5.366 12 C 0.001 3.999 13 H 0.122 0.878 14 C -0.037 4.037 15 O -0.280 6.280 16 C 0.002 3.998 17 C 0.002 3.998 18 N -0.330 5.330 19 C -0.345 4.345 20 H 0.101 0.899 21 C -0.203 4.203 22 N -0.565 5.565 23 Si 0.744 3.256 24 H -0.215 1.215 25 H -0.216 1.216 26 H -0.206 1.206 27 C 0.021 3.979 28 C -0.152 4.152 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.093 0.907 32 H 0.236 0.764 33 H 0.113 0.887 34 H 0.113 0.887 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.112 0.888 40 H 0.113 0.887 41 H 0.238 0.762 42 H 0.087 0.913 43 H 0.104 0.896 44 H 0.061 0.939 45 H 0.058 0.942 46 H 0.064 0.936 47 H 0.050 0.950 48 H 0.092 0.908 49 H 0.114 0.886 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -22.209 -19.918 -1.879 29.892 hybrid contribution 0.503 0.676 0.621 1.047 sum -21.706 -19.242 -1.258 29.034 Atomic orbital electron populations 1.21534 0.79745 1.02176 1.02373 1.45884 1.07843 1.08951 1.76615 1.20916 0.90657 0.83458 0.75327 1.90721 1.70665 1.31294 1.48793 1.21692 0.91074 1.00573 1.04700 1.21372 0.94742 0.94486 1.03746 1.21340 0.94018 0.95104 1.03663 1.21676 0.91830 0.99902 1.04750 1.20751 0.90265 0.83616 0.75461 1.90687 1.70598 1.31309 1.49891 1.46022 1.06944 1.08820 1.74772 1.22609 0.79987 0.99971 0.97313 0.87823 1.23882 1.00517 0.84288 0.95015 1.88751 1.89068 1.16056 1.34174 1.23904 1.00093 0.91965 0.83824 1.22424 0.90968 0.89972 0.96471 1.45298 1.04699 1.32079 1.50874 1.18887 0.93188 1.04287 1.18116 0.89948 1.24805 0.95839 0.99039 1.00608 1.69831 1.04221 1.35141 1.47299 0.86092 0.78120 0.80937 0.80431 1.21470 1.21580 1.20614 1.22517 0.92375 0.87376 0.95588 1.22664 1.02477 0.92696 0.97408 0.92247 0.92238 0.90705 0.76407 0.88665 0.88668 0.91055 0.91044 0.91073 0.91082 0.88753 0.88692 0.76179 0.91273 0.89555 0.93878 0.94186 0.93550 0.95029 0.90801 0.88636 0.89951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.39 10.70 59.85 0.64 1.03 16 2 N -0.74 -3.67 5.71 -67.08 -0.38 -4.05 16 3 C 0.51 4.00 7.83 -10.99 -0.09 3.92 16 4 O -0.54 -6.58 15.98 5.56 0.09 -6.49 16 5 C -0.14 -0.77 5.70 -27.88 -0.16 -0.93 16 6 C -0.11 -0.75 4.50 -26.73 -0.12 -0.87 16 7 C -0.10 -0.81 4.50 -26.73 -0.12 -0.93 16 8 C -0.14 -1.16 5.70 -27.88 -0.16 -1.32 16 9 C 0.51 6.05 7.83 -10.98 -0.09 5.96 16 10 O -0.55 -8.32 15.62 5.56 0.09 -8.23 16 11 N -0.71 -8.43 5.15 -51.72 -0.27 -8.70 16 12 C 0.11 1.48 3.51 -65.77 -0.23 1.25 16 13 H 0.10 1.48 7.54 -51.93 -0.39 1.09 16 14 C 0.04 0.61 7.43 38.25 0.28 0.89 16 15 O -0.36 -6.48 11.32 -35.23 -0.40 -6.87 16 16 C 0.04 0.81 1.66 -90.68 -0.15 0.66 16 17 C 0.13 2.65 8.20 -8.03 -0.07 2.58 16 18 N -0.60 -15.28 3.74 -184.61 -0.69 -15.97 16 19 C -0.22 -6.01 10.74 -15.06 -0.16 -6.17 16 20 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 21 C -0.01 -0.17 5.50 -17.43 -0.10 -0.26 16 22 N -0.92 -26.94 11.51 55.49 0.64 -26.30 16 23 Si 0.91 21.83 29.55 -169.99 -5.02 16.81 16 24 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 25 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 26 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 27 C 0.15 3.51 6.92 -7.90 -0.05 3.46 16 28 C -0.11 -1.85 6.11 -25.50 -0.16 -2.01 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.12 8.14 -51.93 -0.42 -0.30 16 32 H 0.40 0.75 8.83 -40.82 -0.36 0.39 16 33 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.07 0.56 8.10 -51.93 -0.42 0.14 16 36 H 0.07 0.57 8.10 -51.93 -0.42 0.14 16 37 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16 38 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16 39 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.40 4.12 8.62 -40.82 -0.35 3.77 16 42 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 44 H 0.04 0.81 7.91 -51.93 -0.41 0.40 16 45 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 46 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 47 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 48 H 0.07 1.90 6.93 -51.93 -0.36 1.54 16 49 H 0.10 1.68 7.82 -51.93 -0.41 1.28 16 50 H 0.08 1.27 7.69 -51.93 -0.40 0.87 16 LS Contribution 410.20 15.07 6.18 6.18 Total: -1.00 -35.76 410.20 -9.05 -44.81 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -8.56 Total: 1.55 kcal Atomic # 6 Polarization: 7.98 SS G_CDS: -0.72 Total: 7.26 kcal Atomic # 7 Polarization: -54.32 SS G_CDS: -0.70 Total: -55.02 kcal Atomic # 8 Polarization: -21.37 SS G_CDS: -0.22 Total: -21.59 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -35.76 -9.05 -44.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502473038.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.697 kcal (2) G-P(sol) polarization free energy of solvation -35.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds