Wall clock time and date at job start Sat Apr 11 2020 05:47:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34767 * 120.00610 * 2 1 4 4 O 1.21283 * 119.99877 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00333 * 179.97438 * 3 2 1 6 6 C 1.53003 * 109.47154 * 179.97438 * 5 3 2 7 7 C 1.53001 * 109.47120 * 180.02562 * 6 5 3 8 8 C 1.53003 * 109.47120 * 179.97438 * 7 6 5 9 9 C 1.50699 * 109.46727 * 180.02562 * 8 7 6 10 10 O 1.21283 * 120.00216 * 359.97438 * 9 8 7 11 11 N 1.34783 * 119.99663 * 180.02562 * 9 8 7 12 12 C 1.46497 * 119.99974 * 179.97438 * 11 9 8 13 13 H 1.09007 * 110.77177 * 328.53359 * 12 11 9 14 14 C 1.55063 * 111.04728 * 92.18716 * 12 11 9 15 15 O 1.44599 * 103.66842 * 81.72173 * 14 12 11 16 16 C 1.42846 * 106.73521 * 39.08822 * 15 14 12 17 17 C 1.52653 * 115.96585 * 202.47029 * 16 15 14 18 18 N 1.47224 * 87.78043 * 218.41234 * 17 16 15 19 19 C 1.36931 * 135.96376 * 206.38030 * 18 17 16 20 20 H 1.08002 * 120.00438 * 0.02562 * 19 18 17 21 21 C 1.38817 * 119.99680 * 179.72312 * 19 18 17 22 22 N 1.31614 * 119.99888 * 0.27479 * 21 19 18 23 23 Si 1.86803 * 119.99862 * 180.27671 * 21 19 18 24 24 H 1.48498 * 109.47174 * 90.00121 * 23 21 19 25 25 H 1.48501 * 109.47062 * 210.00072 * 23 21 19 26 26 H 1.48504 * 109.46913 * 329.99871 * 23 21 19 27 27 C 1.47220 * 88.06760 * 26.63433 * 18 17 16 28 28 C 1.53317 * 108.32613 * 334.30564 * 16 15 14 29 29 H 1.08998 * 109.46554 * 299.99925 * 1 2 3 30 30 H 1.08994 * 109.46625 * 59.99967 * 1 2 3 31 31 H 1.08999 * 109.47010 * 180.02562 * 1 2 3 32 32 H 0.97007 * 119.99455 * 180.02562 * 2 1 3 33 33 H 1.09006 * 109.46776 * 60.00020 * 5 3 2 34 34 H 1.08996 * 109.47185 * 300.00482 * 5 3 2 35 35 H 1.08994 * 109.46844 * 60.00228 * 6 5 3 36 36 H 1.08998 * 109.46847 * 299.99958 * 6 5 3 37 37 H 1.09006 * 109.46952 * 59.99968 * 7 6 5 38 38 H 1.08996 * 109.47043 * 300.00409 * 7 6 5 39 39 H 1.08994 * 109.46844 * 60.00034 * 8 7 6 40 40 H 1.08998 * 109.46847 * 299.99764 * 8 7 6 41 41 H 0.96994 * 119.99511 * 359.97438 * 11 9 8 42 42 H 1.09000 * 110.58523 * 200.26796 * 14 12 11 43 43 H 1.09004 * 110.58359 * 323.17218 * 14 12 11 44 44 H 1.09002 * 113.49461 * 103.68038 * 17 16 15 45 45 H 1.08998 * 113.55945 * 333.15309 * 17 16 15 46 46 H 0.97005 * 119.99715 * 179.97438 * 22 21 19 47 47 H 1.09001 * 113.49518 * 88.09122 * 27 18 17 48 48 H 1.08998 * 113.50705 * 218.63960 * 27 18 17 49 49 H 1.09002 * 110.56619 * 120.19354 * 28 16 15 50 50 H 1.08999 * 110.56481 * 243.04261 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1670 0.0000 4 8 1.5327 2.2174 -0.0005 5 6 3.6460 1.1670 0.0006 6 6 4.1561 2.6095 -0.0002 7 6 5.6861 2.6094 -0.0002 8 6 6.1962 4.0519 -0.0017 9 6 7.7032 4.0517 -0.0023 10 8 8.3095 3.0013 -0.0013 11 7 8.3772 5.2189 -0.0031 12 6 9.8421 5.2188 -0.0032 13 1 10.2287 4.3498 0.5293 14 6 10.3989 5.2731 -1.4494 15 8 10.3329 6.6773 -1.7884 16 6 10.7066 7.4017 -0.6153 17 6 10.2193 8.8463 -0.5383 18 7 11.5162 9.1912 0.0671 19 6 11.9803 10.1628 0.9131 20 1 11.3059 10.9168 1.2914 21 6 13.3164 10.1748 1.2895 22 7 14.1382 9.2556 0.8290 23 14 13.9480 11.4957 2.4497 24 1 13.8142 11.0275 3.8526 25 1 15.3769 11.7720 2.1543 26 1 13.1551 12.7376 2.2645 27 6 12.0968 8.0380 -0.6403 28 6 10.3946 6.5319 0.6081 29 1 -0.3632 0.5138 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.9500 -0.8401 -0.0004 33 1 4.0096 0.6529 -0.8892 34 1 4.0090 0.6533 0.8907 35 1 3.7925 3.1238 0.8893 36 1 3.7931 3.1227 -0.8907 37 1 6.0494 2.0950 -0.8900 38 1 6.0494 2.0959 0.8899 39 1 5.8329 4.5665 0.8878 40 1 5.8329 4.5648 -0.8921 41 1 7.8922 6.0589 -0.0036 42 1 11.4299 4.9204 -1.4766 43 1 9.7742 4.6864 -2.1229 44 1 9.3742 8.9844 0.1361 45 1 10.0595 9.3047 -1.5142 46 1 15.0719 9.2643 1.0918 47 1 12.4479 8.2760 -1.6444 48 1 12.8359 7.4943 -0.0520 49 1 11.3016 6.3361 1.1801 50 1 9.6412 7.0090 1.2349 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001502473038.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:27 Heat of formation + Delta-G solvation = -99.705990 kcal Electronic energy + Delta-G solvation = -28814.477700 eV Core-core repulsion = 24649.077432 eV Total energy + Delta-G solvation = -4165.400267 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.70361 -40.69894 -40.36498 -38.00372 -36.19344 -35.53266 -35.40738 -34.16534 -32.37761 -31.21745 -29.88738 -28.15752 -27.46215 -26.54461 -25.68137 -23.97837 -22.94138 -21.96124 -21.31971 -21.21075 -20.43551 -18.77046 -18.12650 -18.07807 -17.69558 -17.13955 -17.02708 -16.78781 -16.58753 -16.41490 -15.94186 -15.90313 -15.53794 -15.24331 -14.80112 -14.74146 -14.44651 -14.17038 -14.05597 -13.77159 -13.41512 -13.33435 -13.08376 -13.04498 -12.85195 -12.74819 -12.57506 -12.48842 -12.45241 -12.30004 -12.17932 -12.15401 -12.02093 -11.89783 -11.49033 -11.45375 -10.94300 -10.89494 -10.77922 -10.50794 -10.10509 -9.93050 -8.98357 -7.92538 -5.27632 1.46952 1.49054 1.57573 1.67513 1.68581 2.16656 2.39255 2.43603 2.89247 3.27274 3.39841 3.59197 3.65775 3.69634 3.79211 3.91144 3.94990 4.01888 4.09390 4.37879 4.43562 4.44249 4.53348 4.61732 4.62275 4.67688 4.69951 4.75229 4.80966 4.85472 4.87123 4.91206 4.92630 4.94510 4.97087 4.97984 5.13091 5.16325 5.20826 5.38128 5.44935 5.46506 5.49782 5.56582 5.85437 6.09139 6.58720 6.60087 6.86927 7.28975 7.30808 7.56648 8.55435 9.25081 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.026685 B = 0.001586 C = 0.001550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.007410 B =17649.914224 C =18065.274310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.729 5.729 3 C 0.503 3.497 4 O -0.590 6.590 5 C -0.136 4.136 6 C -0.099 4.099 7 C -0.096 4.096 8 C -0.137 4.137 9 C 0.513 3.487 10 O -0.582 6.582 11 N -0.709 5.709 12 C 0.121 3.879 13 H 0.104 0.896 14 C 0.038 3.962 15 O -0.370 6.370 16 C 0.071 3.929 17 C 0.129 3.871 18 N -0.627 5.627 19 C -0.229 4.229 20 H 0.091 0.909 21 C -0.065 4.065 22 N -0.953 5.953 23 Si 0.982 3.018 24 H -0.282 1.282 25 H -0.297 1.297 26 H -0.268 1.268 27 C 0.141 3.859 28 C -0.107 4.107 29 H 0.046 0.954 30 H 0.046 0.954 31 H 0.108 0.892 32 H 0.419 0.581 33 H 0.114 0.886 34 H 0.114 0.886 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.112 0.888 40 H 0.112 0.888 41 H 0.414 0.586 42 H 0.070 0.930 43 H 0.101 0.899 44 H 0.070 0.930 45 H 0.040 0.960 46 H 0.249 0.751 47 H 0.007 0.993 48 H 0.046 0.954 49 H 0.078 0.922 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.363 -21.163 -1.347 32.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.381 5.381 3 C 0.291 3.709 4 O -0.471 6.471 5 C -0.175 4.175 6 C -0.137 4.137 7 C -0.134 4.134 8 C -0.176 4.176 9 C 0.301 3.699 10 O -0.462 6.462 11 N -0.361 5.361 12 C 0.015 3.985 13 H 0.122 0.878 14 C -0.040 4.040 15 O -0.288 6.288 16 C 0.030 3.970 17 C 0.003 3.997 18 N -0.355 5.355 19 C -0.356 4.356 20 H 0.109 0.891 21 C -0.258 4.258 22 N -0.601 5.601 23 Si 0.810 3.190 24 H -0.209 1.209 25 H -0.223 1.223 26 H -0.192 1.192 27 C 0.014 3.986 28 C -0.145 4.145 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.127 0.873 32 H 0.256 0.744 33 H 0.133 0.867 34 H 0.132 0.868 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.131 0.869 40 H 0.130 0.870 41 H 0.251 0.749 42 H 0.088 0.912 43 H 0.120 0.880 44 H 0.089 0.911 45 H 0.058 0.942 46 H 0.058 0.942 47 H 0.025 0.975 48 H 0.064 0.936 49 H 0.097 0.903 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -24.233 -20.902 -1.357 32.030 hybrid contribution 1.074 0.900 0.378 1.451 sum -23.159 -20.002 -0.979 30.616 Atomic orbital electron populations 1.21629 0.79457 1.04005 1.01140 1.45848 1.08213 1.09065 1.74970 1.21362 0.91635 0.83363 0.74524 1.90697 1.71755 1.33162 1.51490 1.21705 0.89376 0.99934 1.06530 1.21266 0.94104 0.95508 1.02860 1.21261 0.94206 0.94796 1.03142 1.21735 0.88861 1.00610 1.06421 1.21356 0.91576 0.82768 0.74161 1.90678 1.71576 1.32501 1.51456 1.45963 1.05878 1.09631 1.74616 1.22315 0.81445 0.98516 0.96178 0.87817 1.24060 1.01173 0.82706 0.96031 1.88741 1.88603 1.17624 1.33812 1.23418 0.95988 0.92086 0.85467 1.22530 0.89965 0.90594 0.96589 1.45579 1.06913 1.32025 1.50955 1.19325 0.93602 1.04678 1.18015 0.89090 1.25669 0.96190 1.01318 1.02595 1.70030 1.04083 1.37044 1.48975 0.85028 0.76928 0.78711 0.78335 1.20886 1.22327 1.19230 1.22484 0.94599 0.87884 0.93601 1.22546 1.02318 0.93438 0.96181 0.93515 0.93503 0.87335 0.74395 0.86743 0.86751 0.91958 0.91962 0.91588 0.91600 0.86945 0.87009 0.74941 0.91198 0.88047 0.91142 0.94191 0.94215 0.97483 0.93581 0.90333 0.88537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.64 10.70 127.77 1.37 2.01 16 2 N -0.73 -5.99 5.71 -484.53 -2.77 -8.76 16 3 C 0.50 7.36 7.83 87.66 0.69 8.04 16 4 O -0.59 -14.46 15.98 -3.04 -0.05 -14.50 16 5 C -0.14 -1.22 5.70 29.85 0.17 -1.05 16 6 C -0.10 -1.26 4.50 30.60 0.14 -1.12 16 7 C -0.10 -1.30 4.50 30.60 0.14 -1.16 16 8 C -0.14 -1.87 5.70 29.85 0.17 -1.70 16 9 C 0.51 10.93 7.83 87.66 0.69 11.62 16 10 O -0.58 -16.71 15.62 -3.04 -0.05 -16.76 16 11 N -0.71 -14.96 5.15 -435.92 -2.25 -17.20 16 12 C 0.12 3.18 3.51 46.39 0.16 3.35 16 13 H 0.10 2.81 7.54 -2.38 -0.02 2.80 16 14 C 0.04 1.07 7.43 72.69 0.54 1.61 16 15 O -0.37 -12.78 11.32 -148.98 -1.69 -14.46 16 16 C 0.07 2.67 1.66 -10.83 -0.02 2.65 16 17 C 0.13 5.17 8.20 83.40 0.68 5.85 16 18 N -0.63 -32.05 3.74 -739.10 -2.76 -34.81 16 19 C -0.23 -12.64 10.74 84.04 0.90 -11.73 16 20 H 0.09 4.73 7.83 -2.91 -0.02 4.71 16 21 C -0.06 -3.64 5.50 84.86 0.47 -3.17 16 22 N -0.95 -57.49 11.51 21.65 0.25 -57.24 16 23 Si 0.98 45.14 29.55 68.60 2.03 47.17 16 24 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 25 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 26 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 27 C 0.14 6.90 6.92 83.49 0.58 7.48 16 28 C -0.11 -3.34 6.11 31.39 0.19 -3.15 16 29 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.11 0.09 8.14 -2.39 -0.02 0.07 16 32 H 0.42 0.49 8.83 -92.70 -0.82 -0.33 16 33 H 0.11 0.61 8.14 -2.38 -0.02 0.59 16 34 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.06 0.91 8.10 -2.39 -0.02 0.89 16 36 H 0.06 0.91 8.10 -2.39 -0.02 0.89 16 37 H 0.07 0.98 8.10 -2.38 -0.02 0.96 16 38 H 0.07 0.98 8.10 -2.39 -0.02 0.96 16 39 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.41 7.15 8.62 -92.71 -0.80 6.35 16 42 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 43 H 0.10 2.61 8.14 -2.38 -0.02 2.59 16 44 H 0.07 2.46 7.91 -2.39 -0.02 2.44 16 45 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 46 H 0.25 14.60 8.31 -92.70 -0.77 13.83 16 47 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 48 H 0.05 2.49 6.93 -2.39 -0.02 2.47 16 49 H 0.08 2.77 7.82 -2.39 -0.02 2.75 16 50 H 0.10 2.76 7.69 -2.39 -0.02 2.75 16 Total: -1.00 -79.35 410.20 -1.09 -80.44 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: -0.67 Total: 16.62 kcal Atomic # 6 Polarization: 12.65 SS G_CDS: 6.86 Total: 19.51 kcal Atomic # 7 Polarization: -110.48 SS G_CDS: -7.53 Total: -118.01 kcal Atomic # 8 Polarization: -43.94 SS G_CDS: -1.78 Total: -45.73 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -79.35 -1.09 -80.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502473038.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.265 kcal (2) G-P(sol) polarization free energy of solvation -79.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds