Wall clock time and date at job start Sat Apr 11 2020 05:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42900 * 114.00298 * 2 1 4 4 C 1.50693 * 109.47634 * 179.97438 * 3 2 1 5 5 O 1.21292 * 119.99858 * 359.97438 * 4 3 2 6 6 N 1.34772 * 120.00392 * 179.97438 * 4 3 2 7 7 C 1.46502 * 120.00023 * 0.02562 * 6 4 3 8 8 C 1.46506 * 120.00345 * 179.97438 * 6 4 3 9 9 C 1.50701 * 109.47282 * 270.00616 * 8 6 4 10 10 O 1.21281 * 119.99913 * 359.97438 * 9 8 6 11 11 N 1.34771 * 119.99935 * 179.97438 * 9 8 6 12 12 C 1.46500 * 120.00294 * 180.02562 * 11 9 8 13 13 C 1.53579 * 112.24509 * 62.34604 * 12 11 9 14 14 C 1.54224 * 106.67544 * 121.76008 * 13 12 11 15 15 C 1.54759 * 104.15350 * 24.94436 * 14 13 12 16 16 C 1.55160 * 112.18904 * 183.38368 * 12 11 9 17 17 H 1.08999 * 112.04263 * 337.23089 * 16 12 11 18 18 N 1.46986 * 107.06736 * 100.16237 * 16 12 11 19 19 C 1.36929 * 125.57872 * 177.86674 * 18 16 12 20 20 H 1.08004 * 120.00341 * 359.97438 * 19 18 16 21 21 C 1.38815 * 120.00031 * 179.71466 * 19 18 16 22 22 N 1.31617 * 119.99916 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99958 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47093 * 60.00562 * 23 21 19 25 25 H 1.48495 * 109.47002 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47239 * 300.00281 * 23 21 19 27 27 C 1.47366 * 108.83964 * 357.60359 * 18 16 12 28 28 C 1.54872 * 104.82404 * 24.94983 * 27 18 16 29 29 H 1.08996 * 109.47057 * 59.99840 * 1 2 3 30 30 H 1.08997 * 109.47337 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47180 * 299.99987 * 1 2 3 32 32 H 1.09005 * 109.47038 * 59.99593 * 3 2 1 33 33 H 1.09000 * 109.47230 * 300.00341 * 3 2 1 34 34 H 1.08996 * 109.46852 * 270.00002 * 7 6 4 35 35 H 1.09002 * 109.46975 * 29.99674 * 7 6 4 36 36 H 1.09000 * 109.47169 * 149.99329 * 7 6 4 37 37 H 1.08994 * 109.47369 * 150.00093 * 8 6 4 38 38 H 1.09001 * 109.46799 * 30.00312 * 8 6 4 39 39 H 0.97001 * 120.00515 * 359.97438 * 11 9 8 40 40 H 1.09003 * 110.02202 * 241.06870 * 13 12 11 41 41 H 1.09003 * 110.02002 * 2.41560 * 13 12 11 42 42 H 1.09002 * 110.49183 * 143.60431 * 14 13 12 43 43 H 1.08993 * 110.49813 * 266.13928 * 14 13 12 44 44 H 1.09004 * 110.67206 * 80.62237 * 15 14 13 45 45 H 1.09006 * 110.66617 * 203.58705 * 15 14 13 46 46 H 0.97000 * 120.00284 * 179.97438 * 22 21 19 47 47 H 1.09000 * 110.36987 * 143.78501 * 27 18 16 48 48 H 1.09002 * 110.36796 * 266.11474 * 27 18 16 49 49 H 1.08998 * 110.96695 * 81.05080 * 28 27 18 50 50 H 1.09001 * 110.96393 * 204.81021 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1865 0.0006 5 8 4.0341 0.0915 0.0015 6 7 4.2764 2.2968 0.0002 7 6 3.6464 3.6194 -0.0003 8 6 5.7369 2.1811 0.0014 9 6 6.2367 2.1426 1.4226 10 8 5.4504 2.2060 2.3438 11 7 7.5573 2.0377 1.6699 12 6 8.0432 1.9996 3.0515 13 6 7.5160 0.7788 3.8198 14 6 8.7516 -0.0065 4.3045 15 6 9.8722 1.0584 4.3772 16 6 9.5925 1.9615 3.1270 17 1 10.0374 1.5774 2.2090 18 7 10.0438 3.3289 3.4221 19 6 11.3437 3.7155 3.6107 20 1 12.1385 2.9871 3.5467 21 6 11.6406 5.0448 3.8788 22 7 10.6724 5.9334 3.9522 23 14 13.4141 5.5724 4.1354 24 1 14.2026 5.2680 2.9144 25 1 13.4622 7.0318 4.4051 26 1 13.9872 4.8367 5.2910 27 6 8.8688 4.2167 3.4755 28 6 7.6849 3.2859 3.8371 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8464 -0.8899 34 1 3.4902 3.9470 -1.0280 35 1 2.6867 3.5649 0.5135 36 1 4.2936 4.3303 0.5134 37 1 6.1698 3.0392 -0.5128 38 1 6.0292 1.2648 -0.5115 39 1 8.1862 1.9866 0.9332 40 1 6.9216 1.1035 4.6738 41 1 6.9119 0.1553 3.1605 42 1 8.5687 -0.4357 5.2896 43 1 9.0111 -0.7883 3.5908 44 1 9.7946 1.6364 5.2981 45 1 10.8535 0.5902 4.2999 46 1 10.8798 6.8622 4.1399 47 1 9.0023 4.9769 4.2451 48 1 8.7016 4.6835 2.5048 49 1 7.6543 3.0924 4.9093 50 1 6.7400 3.7043 3.4905 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507346988.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:45 Heat of formation + Delta-G solvation = -96.002314 kcal Electronic energy + Delta-G solvation = -31149.938726 eV Core-core repulsion = 26984.699062 eV Total energy + Delta-G solvation = -4165.239664 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.74345 -40.93824 -39.40974 -38.36337 -36.50495 -36.00708 -34.72244 -33.34293 -31.79925 -30.84328 -29.00533 -28.39280 -27.63612 -27.18548 -26.07689 -25.71335 -22.88490 -21.68409 -21.32911 -20.37334 -20.18010 -18.89180 -18.49629 -18.33080 -17.76057 -17.33198 -17.08810 -16.83274 -16.52094 -16.17785 -15.86864 -15.68505 -15.35464 -15.10368 -14.97895 -14.59769 -14.45965 -13.98350 -13.93379 -13.80643 -13.59436 -13.39331 -13.20046 -13.12179 -12.94015 -12.83772 -12.79040 -12.63488 -12.33215 -12.30323 -12.06942 -11.92155 -11.70278 -11.59688 -11.48826 -11.28393 -10.99155 -10.88580 -10.76626 -10.70141 -9.93800 -9.74429 -8.85109 -7.72505 -5.17103 1.37988 1.48978 1.51321 1.57342 1.65649 1.69086 2.30903 2.52427 2.97694 3.36247 3.37596 3.55901 3.63106 3.84101 3.94540 3.94876 4.07530 4.19278 4.20775 4.30054 4.33499 4.36365 4.39120 4.45558 4.50765 4.56999 4.57426 4.67029 4.72795 4.75540 4.86718 4.88785 4.92129 4.96848 5.05776 5.14569 5.19591 5.25203 5.30438 5.48391 5.50296 5.64829 5.70995 5.84947 5.99590 6.28590 6.32394 6.60132 7.05685 7.13563 7.29818 7.81526 8.45600 9.28567 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021052 B = 0.002666 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.720639 B =10501.321201 C =11262.772802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.409 6.409 3 C 0.050 3.950 4 C 0.509 3.491 5 O -0.573 6.573 6 N -0.596 5.596 7 C 0.072 3.928 8 C 0.099 3.901 9 C 0.494 3.506 10 O -0.565 6.565 11 N -0.703 5.703 12 C 0.172 3.828 13 C -0.103 4.103 14 C -0.111 4.111 15 C -0.123 4.123 16 C 0.153 3.847 17 H 0.062 0.938 18 N -0.611 5.611 19 C -0.224 4.224 20 H 0.084 0.916 21 C -0.069 4.069 22 N -0.950 5.950 23 Si 0.977 3.023 24 H -0.278 1.278 25 H -0.298 1.298 26 H -0.279 1.279 27 C 0.165 3.835 28 C -0.126 4.126 29 H 0.065 0.935 30 H 0.094 0.906 31 H 0.055 0.945 32 H 0.099 0.901 33 H 0.117 0.883 34 H 0.094 0.906 35 H 0.087 0.913 36 H 0.070 0.930 37 H 0.144 0.856 38 H 0.115 0.885 39 H 0.410 0.590 40 H 0.058 0.942 41 H 0.055 0.945 42 H 0.076 0.924 43 H 0.079 0.921 44 H 0.049 0.951 45 H 0.066 0.934 46 H 0.245 0.755 47 H 0.071 0.929 48 H -0.013 1.013 49 H 0.059 0.941 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.638 -6.909 -10.749 21.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.328 6.328 3 C -0.029 4.029 4 C 0.298 3.702 5 O -0.452 6.452 6 N -0.329 5.329 7 C -0.070 4.070 8 C -0.027 4.027 9 C 0.280 3.720 10 O -0.443 6.443 11 N -0.354 5.354 12 C 0.085 3.915 13 C -0.142 4.142 14 C -0.149 4.149 15 C -0.163 4.163 16 C 0.046 3.954 17 H 0.079 0.921 18 N -0.335 5.335 19 C -0.353 4.353 20 H 0.102 0.898 21 C -0.261 4.261 22 N -0.600 5.600 23 Si 0.805 3.195 24 H -0.204 1.204 25 H -0.225 1.225 26 H -0.205 1.205 27 C 0.040 3.960 28 C -0.166 4.166 29 H 0.083 0.917 30 H 0.113 0.887 31 H 0.074 0.926 32 H 0.116 0.884 33 H 0.135 0.865 34 H 0.112 0.888 35 H 0.106 0.894 36 H 0.089 0.911 37 H 0.162 0.838 38 H 0.133 0.867 39 H 0.246 0.754 40 H 0.077 0.923 41 H 0.074 0.926 42 H 0.094 0.906 43 H 0.097 0.903 44 H 0.068 0.932 45 H 0.085 0.915 46 H 0.054 0.946 47 H 0.089 0.911 48 H 0.005 0.995 49 H 0.077 0.923 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -17.723 -7.392 -10.073 21.684 hybrid contribution 1.154 0.954 0.144 1.504 sum -16.569 -6.437 -9.929 20.361 Atomic orbital electron populations 1.23041 0.78166 1.04206 1.01696 1.87962 1.22296 1.26793 1.95776 1.22381 0.88850 0.86710 1.04964 1.20991 0.90486 0.83632 0.75109 1.90693 1.75649 1.28277 1.50542 1.47463 1.05110 1.07624 1.72737 1.22158 0.99344 0.81508 1.03969 1.21419 0.81437 1.07297 0.92586 1.21662 0.82087 0.75231 0.93007 1.90652 1.55911 1.50452 1.47326 1.45848 1.07466 1.74103 1.08005 1.21442 0.93200 0.95093 0.81811 1.22169 0.97723 0.95325 0.99028 1.22288 0.93541 0.97192 1.01851 1.23105 0.98522 0.96534 0.98138 1.22416 0.90455 0.86158 0.96323 0.92062 1.44691 1.02616 1.03461 1.82689 1.19353 0.83466 0.92990 1.39529 0.89837 1.25573 1.01280 0.96153 1.03070 1.70043 1.31010 1.01708 1.57283 0.85174 0.79806 0.76348 0.78130 1.20385 1.22462 1.20544 1.21615 0.83870 0.92686 0.97813 1.23092 0.98386 0.96346 0.98729 0.91682 0.88739 0.92615 0.88354 0.86504 0.88808 0.89421 0.91111 0.83803 0.86743 0.75366 0.92340 0.92594 0.90559 0.90251 0.93229 0.91526 0.94570 0.91134 0.99496 0.92258 0.91763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 11.01 113.37 1.25 1.55 16 2 O -0.41 -9.36 10.24 -129.94 -1.33 -10.69 16 3 C 0.05 0.87 4.97 71.23 0.35 1.23 16 4 C 0.51 13.16 7.75 87.66 0.68 13.84 16 5 O -0.57 -20.63 16.08 15.97 0.26 -20.38 16 6 N -0.60 -12.47 2.36 -851.12 -2.01 -14.48 16 7 C 0.07 0.89 10.24 127.77 1.31 2.20 16 8 C 0.10 2.15 5.89 85.63 0.50 2.66 16 9 C 0.49 14.98 7.09 87.66 0.62 15.60 16 10 O -0.56 -21.06 14.25 -3.03 -0.04 -21.10 16 11 N -0.70 -21.49 5.22 -415.77 -2.17 -23.66 16 12 C 0.17 6.16 0.74 5.19 0.00 6.17 16 13 C -0.10 -3.47 5.30 31.20 0.17 -3.30 16 14 C -0.11 -3.25 6.84 31.61 0.22 -3.03 16 15 C -0.12 -4.37 6.30 32.50 0.20 -4.17 16 16 C 0.15 6.01 3.78 46.95 0.18 6.19 16 17 H 0.06 2.28 7.95 -2.39 -0.02 2.26 16 18 N -0.61 -30.06 3.04 -659.80 -2.01 -32.07 16 19 C -0.22 -12.04 10.04 84.04 0.84 -11.20 16 20 H 0.08 4.26 7.83 -2.91 -0.02 4.24 16 21 C -0.07 -3.80 5.49 84.86 0.47 -3.34 16 22 N -0.95 -55.97 10.07 21.65 0.22 -55.76 16 23 Si 0.98 44.93 29.55 68.60 2.03 46.96 16 24 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 25 H -0.30 -13.96 7.11 99.48 0.71 -13.26 16 26 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 27 C 0.17 8.23 5.90 86.85 0.51 8.74 16 28 C -0.13 -5.27 5.71 31.89 0.18 -5.09 16 29 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.10 1.37 7.40 -2.38 -0.02 1.35 16 33 H 0.12 1.10 8.11 -2.39 -0.02 1.08 16 34 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.09 0.83 6.44 -2.39 -0.02 0.81 16 36 H 0.07 1.04 8.07 -2.39 -0.02 1.02 16 37 H 0.14 2.10 8.07 -2.39 -0.02 2.08 16 38 H 0.11 2.49 7.42 -2.39 -0.02 2.48 16 39 H 0.41 10.60 8.47 -92.71 -0.78 9.82 16 40 H 0.06 2.07 7.38 -2.39 -0.02 2.05 16 41 H 0.06 1.93 7.60 -2.39 -0.02 1.91 16 42 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 43 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 44 H 0.05 2.00 8.11 -2.38 -0.02 1.98 16 45 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 46 H 0.24 14.13 8.31 -92.71 -0.77 13.36 16 47 H 0.07 4.06 5.82 -2.39 -0.01 4.05 16 48 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 49 H 0.06 2.54 7.63 -2.39 -0.02 2.52 16 50 H 0.06 2.71 6.53 -2.39 -0.02 2.69 16 Total: -1.00 -80.47 395.46 2.59 -77.88 By element: Atomic # 1 Polarization: 25.08 SS G_CDS: 0.16 Total: 25.24 kcal Atomic # 6 Polarization: 20.56 SS G_CDS: 7.49 Total: 28.05 kcal Atomic # 7 Polarization: -120.00 SS G_CDS: -5.97 Total: -125.97 kcal Atomic # 8 Polarization: -51.05 SS G_CDS: -1.12 Total: -52.16 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -80.47 2.59 -77.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507346988.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.122 kcal (2) G-P(sol) polarization free energy of solvation -80.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds