Wall clock time and date at job start Sat Apr 11 2020 05:48:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34784 * 119.99572 * 2 1 4 4 O 1.21281 * 119.99544 * 180.02562 * 3 2 1 5 5 C 1.50695 * 120.00123 * 0.02562 * 3 2 1 6 6 C 1.53001 * 109.47286 * 179.97438 * 5 3 2 7 7 C 1.52998 * 109.47502 * 180.02562 * 6 5 3 8 8 H 1.09006 * 110.41569 * 55.85102 * 7 6 5 9 9 C 1.54474 * 110.37464 * 178.16360 * 7 6 5 10 10 C 1.54512 * 104.06131 * 142.80812 * 9 7 6 11 11 C 1.54475 * 104.06386 * 0.02562 * 10 9 7 12 12 H 1.08994 * 110.37405 * 94.85356 * 11 10 9 13 13 C 1.50703 * 110.37238 * 217.19203 * 11 10 9 14 14 N 1.34773 * 119.99985 * 291.83372 * 13 11 10 15 15 O 1.21280 * 120.00052 * 111.83605 * 13 11 10 16 16 O 1.44426 * 104.80234 * 336.01918 * 11 10 9 17 17 C 1.46495 * 120.00534 * 180.02562 * 2 1 3 18 18 C 1.53783 * 113.61549 * 39.13347 * 17 2 1 19 19 C 1.53953 * 87.02118 * 220.05095 * 18 17 2 20 20 N 1.46497 * 113.66596 * 139.92946 * 19 18 17 21 21 C 1.36943 * 119.99977 * 107.43818 * 20 19 18 22 22 H 1.07994 * 119.99766 * 0.02562 * 21 20 19 23 23 C 1.38815 * 120.00118 * 179.97438 * 21 20 19 24 24 N 1.31617 * 119.99658 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99928 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.46797 * 60.00604 * 25 23 21 27 27 H 1.48501 * 109.46967 * 180.02562 * 25 23 21 28 28 H 1.48492 * 109.47101 * 300.00546 * 25 23 21 29 29 C 1.53780 * 113.61286 * 301.52768 * 17 2 1 30 30 H 1.08996 * 109.47235 * 89.99735 * 1 2 3 31 31 H 1.09003 * 109.46561 * 209.99490 * 1 2 3 32 32 H 1.09000 * 109.47355 * 329.99531 * 1 2 3 33 33 H 1.09008 * 109.47222 * 59.99847 * 5 3 2 34 34 H 1.08994 * 109.47135 * 300.00076 * 5 3 2 35 35 H 1.08995 * 109.47197 * 59.99591 * 6 5 3 36 36 H 1.09005 * 109.46468 * 299.99939 * 6 5 3 37 37 H 1.08999 * 110.50826 * 24.16049 * 9 7 6 38 38 H 1.09000 * 110.63108 * 261.51047 * 9 7 6 39 39 H 1.09002 * 110.50990 * 241.35711 * 10 9 7 40 40 H 1.08996 * 110.51179 * 118.64866 * 10 9 7 41 41 H 0.97009 * 119.99740 * 0.02562 * 14 13 11 42 42 H 0.97003 * 120.00439 * 179.97438 * 14 13 11 43 43 H 1.09001 * 112.85138 * 170.33191 * 17 2 1 44 44 H 1.09006 * 113.61140 * 334.56932 * 18 17 2 45 45 H 1.08999 * 113.61682 * 105.47094 * 18 17 2 46 46 H 1.08994 * 113.53594 * 270.81082 * 19 18 17 47 47 H 0.97006 * 120.00643 * 287.44025 * 20 19 18 48 48 H 0.97003 * 119.99367 * 179.97438 * 24 23 21 49 49 H 1.09005 * 113.61799 * 254.52611 * 29 17 2 50 50 H 1.09000 * 113.61434 * 25.34522 * 29 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3516 1.1673 -0.0005 5 6 1.3853 2.4723 0.0006 6 6 2.3794 3.6353 0.0011 7 6 1.6144 4.9603 0.0023 8 1 0.9279 5.0023 0.8481 9 6 2.5989 6.1498 0.0493 10 6 1.9436 7.2156 -0.8573 11 6 0.6403 6.5442 -1.3442 12 1 -0.1952 6.8294 -0.7050 13 6 0.3593 6.9210 -2.7761 14 7 0.0260 8.1895 -3.0861 15 8 0.4331 6.0826 -3.6493 16 8 0.8936 5.1263 -1.2378 17 6 2.1976 -1.2686 -0.0006 18 6 1.5592 -2.3483 -0.8903 19 6 1.9076 -3.3557 0.2204 20 7 0.8604 -4.3516 0.4607 21 6 1.0434 -5.6481 0.0595 22 1 1.9598 -5.9364 -0.4337 23 6 0.0513 -6.5918 0.2877 24 7 -1.0654 -6.2404 0.8892 25 14 0.3012 -8.3605 -0.2590 26 1 1.4956 -8.9243 0.4198 27 1 -0.8964 -9.1628 0.0979 28 1 0.5029 -8.4002 -1.7296 29 6 1.8676 -2.1710 1.2001 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3632 -0.8901 0.5138 32 1 -0.3634 0.8899 0.5139 33 1 0.7589 2.5299 0.8909 34 1 0.7583 2.5302 -0.8891 35 1 3.0061 3.5780 -0.8888 36 1 3.0060 3.5772 0.8911 37 1 3.5711 5.8566 -0.3470 38 1 2.7001 6.5246 1.0678 39 1 2.5918 7.4494 -1.7019 40 1 1.7185 8.1164 -0.2865 41 1 -0.0327 8.8601 -2.3876 42 1 -0.1545 8.4321 -4.0078 43 1 3.2667 -1.1399 -0.1692 44 1 0.4875 -2.2147 -1.0381 45 1 2.0977 -2.5207 -1.8222 46 1 2.8974 -3.7988 0.1113 47 1 0.0373 -4.0927 0.9040 48 1 -1.7588 -6.8999 1.0483 49 1 2.6548 -2.2007 1.9535 50 1 0.8810 -1.9879 1.6258 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001508121182.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:12 Heat of formation + Delta-G solvation = -90.507626 kcal Electronic energy + Delta-G solvation = -29194.633594 eV Core-core repulsion = 25029.632198 eV Total energy + Delta-G solvation = -4165.001396 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.74683 -40.05288 -38.82890 -37.94987 -34.69649 -34.31444 -33.78100 -32.98560 -32.44855 -30.06067 -29.23241 -26.87646 -25.80635 -25.07013 -24.24866 -23.00824 -21.87678 -21.29931 -20.95718 -19.20492 -18.67695 -18.18707 -17.42779 -17.10781 -17.06288 -16.75871 -16.21069 -15.99163 -15.45473 -15.13656 -14.71749 -14.53018 -14.49142 -14.16450 -13.73210 -13.72262 -13.57611 -12.98743 -12.76056 -12.71772 -12.46905 -12.29116 -12.19311 -11.97521 -11.85072 -11.73798 -11.40364 -11.27679 -11.19044 -11.07170 -10.86160 -10.52823 -10.45827 -10.42042 -10.24586 -10.20179 -10.06908 -9.97652 -9.67076 -9.44364 -8.87134 -8.34377 -6.96743 -5.78530 -3.07135 2.13010 2.65892 2.76914 3.16922 3.44674 3.49004 3.50029 3.58101 3.96976 4.16726 4.31707 4.39970 4.57738 4.59943 4.61683 4.74416 4.89525 5.00709 5.08330 5.15688 5.17166 5.23351 5.27676 5.30766 5.37886 5.44842 5.48448 5.52288 5.59776 5.64310 5.82764 5.84444 5.90153 6.00842 6.04012 6.20724 6.22006 6.33579 6.37909 6.38263 6.51971 6.61914 6.79784 6.86748 7.08637 7.62546 7.70190 7.77911 8.33062 8.40154 9.51354 10.08331 10.43128 11.43826 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.024505 B = 0.001725 C = 0.001665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.345494 B =16224.809205 C =16809.311086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.600 5.600 3 C 0.511 3.489 4 O -0.551 6.551 5 C -0.138 4.138 6 C -0.096 4.096 7 C 0.072 3.928 8 H 0.075 0.925 9 C -0.150 4.150 10 C -0.144 4.144 11 C 0.056 3.944 12 H 0.095 0.905 13 C 0.521 3.479 14 N -0.854 5.854 15 O -0.517 6.517 16 O -0.338 6.338 17 C 0.116 3.884 18 C -0.175 4.175 19 C 0.169 3.831 20 N -0.709 5.709 21 C -0.244 4.244 22 H 0.072 0.928 23 C -0.013 4.013 24 N -0.933 5.933 25 Si 0.908 3.092 26 H -0.285 1.285 27 H -0.291 1.291 28 H -0.286 1.286 29 C -0.162 4.162 30 H 0.057 0.943 31 H 0.080 0.920 32 H 0.068 0.932 33 H 0.091 0.909 34 H 0.100 0.900 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.086 0.914 41 H 0.401 0.599 42 H 0.405 0.595 43 H 0.113 0.887 44 H 0.082 0.918 45 H 0.059 0.941 46 H 0.079 0.921 47 H 0.385 0.615 48 H 0.256 0.744 49 H 0.063 0.937 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.141 34.634 -0.257 34.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.331 5.331 3 C 0.300 3.700 4 O -0.429 6.429 5 C -0.178 4.178 6 C -0.133 4.133 7 C 0.014 3.986 8 H 0.093 0.907 9 C -0.187 4.187 10 C -0.182 4.182 11 C -0.006 4.006 12 H 0.113 0.887 13 C 0.304 3.696 14 N -0.420 5.420 15 O -0.390 6.390 16 O -0.256 6.256 17 C 0.012 3.988 18 C -0.217 4.217 19 C 0.056 3.944 20 N -0.347 5.347 21 C -0.375 4.375 22 H 0.089 0.911 23 C -0.209 4.209 24 N -0.581 5.581 25 Si 0.739 3.261 26 H -0.212 1.212 27 H -0.217 1.217 28 H -0.212 1.212 29 C -0.202 4.202 30 H 0.076 0.924 31 H 0.099 0.901 32 H 0.087 0.913 33 H 0.109 0.891 34 H 0.118 0.882 35 H 0.099 0.901 36 H 0.104 0.896 37 H 0.102 0.898 38 H 0.101 0.899 39 H 0.098 0.902 40 H 0.104 0.896 41 H 0.229 0.771 42 H 0.237 0.763 43 H 0.131 0.869 44 H 0.101 0.899 45 H 0.078 0.922 46 H 0.097 0.903 47 H 0.219 0.781 48 H 0.066 0.934 49 H 0.082 0.918 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 2.845 33.523 -0.891 33.655 hybrid contribution -0.538 -0.222 -0.066 0.586 sum 2.307 33.301 -0.958 33.394 Atomic orbital electron populations 1.21795 0.79595 1.03308 1.02135 1.47890 1.06952 1.05991 1.72273 1.20683 0.88030 0.85509 0.75788 1.90659 1.14085 1.87576 1.50572 1.21674 0.99432 0.92106 1.04617 1.21407 0.97109 0.90316 1.04518 1.23178 0.92645 0.95659 0.87109 0.90717 1.22993 1.00351 0.94786 1.00607 1.22909 0.95660 0.99157 1.00481 1.22813 0.99014 0.84894 0.93892 0.88713 1.20277 0.76263 0.82487 0.90599 1.43750 1.74055 1.10707 1.13519 1.90816 1.49443 1.49155 1.49608 1.89316 1.76002 1.19812 1.40474 1.22583 0.97268 0.80484 0.98433 1.24340 1.01106 0.96813 0.99418 1.21377 0.93701 0.87262 0.92019 1.42341 1.17090 1.05601 1.69696 1.19282 1.01202 0.85572 1.31491 0.91050 1.24759 0.96527 0.98296 1.01275 1.69648 1.07224 1.33805 1.47456 0.86249 0.76810 0.84711 0.78312 1.21216 1.21701 1.21227 1.23909 1.01710 0.97267 0.97327 0.92402 0.90126 0.91307 0.89122 0.88209 0.90083 0.89593 0.89823 0.89857 0.90153 0.89576 0.77072 0.76312 0.86942 0.89922 0.92213 0.90313 0.78127 0.93432 0.91849 0.90121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.89 8.84 59.85 0.53 1.42 16 2 N -0.60 -8.67 3.08 -173.01 -0.53 -9.20 16 3 C 0.51 7.44 7.67 -10.98 -0.08 7.35 16 4 O -0.55 -9.80 15.46 5.56 0.09 -9.71 16 5 C -0.14 -1.46 4.17 -27.88 -0.12 -1.58 16 6 C -0.10 -0.93 4.14 -26.73 -0.11 -1.05 16 7 C 0.07 0.54 3.27 -25.96 -0.08 0.46 16 8 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 9 C -0.15 -0.82 6.63 -25.16 -0.17 -0.99 16 10 C -0.14 -0.64 6.62 -25.16 -0.17 -0.81 16 11 C 0.06 0.37 3.71 -27.11 -0.10 0.27 16 12 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 13 C 0.52 4.39 7.34 -10.99 -0.08 4.31 16 14 N -0.85 -3.04 8.87 31.22 0.28 -2.76 16 15 O -0.52 -7.34 17.39 -13.63 -0.24 -7.58 16 16 O -0.34 -3.48 10.26 -54.42 -0.56 -4.04 16 17 C 0.12 1.89 4.21 -67.12 -0.28 1.60 16 18 C -0.17 -3.12 7.34 -25.83 -0.19 -3.31 16 19 C 0.17 3.40 4.48 -67.03 -0.30 3.10 16 20 N -0.71 -17.71 5.40 -52.55 -0.28 -17.99 16 21 C -0.24 -6.79 9.97 -15.06 -0.15 -6.94 16 22 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 23 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 24 N -0.93 -27.99 13.06 55.49 0.72 -27.27 16 25 Si 0.91 22.43 29.55 -169.99 -5.02 17.41 16 26 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 27 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 28 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 29 C -0.16 -2.77 7.36 -25.92 -0.19 -2.97 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.08 1.03 6.33 -51.93 -0.33 0.71 16 32 H 0.07 0.63 6.44 -51.93 -0.33 0.29 16 33 H 0.09 0.76 7.40 -51.92 -0.38 0.37 16 34 H 0.10 1.09 7.88 -51.93 -0.41 0.68 16 35 H 0.08 0.96 8.10 -51.93 -0.42 0.54 16 36 H 0.09 0.81 8.10 -51.93 -0.42 0.38 16 37 H 0.08 0.53 7.87 -51.93 -0.41 0.12 16 38 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.08 0.41 7.87 -51.93 -0.41 0.01 16 40 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 41 H 0.40 0.02 8.83 -40.82 -0.36 -0.34 16 42 H 0.41 1.21 8.93 -40.82 -0.36 0.84 16 43 H 0.11 1.93 7.21 -51.93 -0.37 1.56 16 44 H 0.08 1.52 6.81 -51.93 -0.35 1.16 16 45 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 46 H 0.08 1.58 8.10 -51.93 -0.42 1.16 16 47 H 0.38 10.08 7.93 -40.82 -0.32 9.76 16 48 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 49 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 50 H 0.08 1.38 6.80 -51.93 -0.35 1.03 16 LS Contribution 403.40 15.07 6.08 6.08 Total: -1.00 -37.38 403.40 -9.23 -46.61 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: -8.17 Total: 8.03 kcal Atomic # 6 Polarization: 2.01 SS G_CDS: -1.59 Total: 0.42 kcal Atomic # 7 Polarization: -57.41 SS G_CDS: 0.18 Total: -57.22 kcal Atomic # 8 Polarization: -20.62 SS G_CDS: -0.71 Total: -21.33 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -37.38 -9.23 -46.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001508121182.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.895 kcal (2) G-P(sol) polarization free energy of solvation -37.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds