Wall clock time and date at job start Sat Apr 11 2020 05:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34784 * 119.99572 * 2 1 4 4 O 1.21281 * 119.99544 * 180.02562 * 3 2 1 5 5 C 1.50695 * 120.00123 * 0.02562 * 3 2 1 6 6 C 1.53001 * 109.47286 * 179.97438 * 5 3 2 7 7 C 1.52998 * 109.47502 * 180.02562 * 6 5 3 8 8 H 1.09006 * 110.41569 * 55.85102 * 7 6 5 9 9 C 1.54474 * 110.37464 * 178.16360 * 7 6 5 10 10 C 1.54512 * 104.06131 * 142.80812 * 9 7 6 11 11 C 1.54475 * 104.06386 * 0.02562 * 10 9 7 12 12 H 1.08994 * 110.37405 * 94.85356 * 11 10 9 13 13 C 1.50703 * 110.37238 * 217.19203 * 11 10 9 14 14 N 1.34773 * 119.99985 * 291.83372 * 13 11 10 15 15 O 1.21280 * 120.00052 * 111.83605 * 13 11 10 16 16 O 1.44426 * 104.80234 * 336.01918 * 11 10 9 17 17 C 1.46495 * 120.00534 * 180.02562 * 2 1 3 18 18 C 1.53783 * 113.61549 * 39.13347 * 17 2 1 19 19 C 1.53953 * 87.02118 * 220.05095 * 18 17 2 20 20 N 1.46497 * 113.66596 * 139.92946 * 19 18 17 21 21 C 1.36943 * 119.99977 * 107.43818 * 20 19 18 22 22 H 1.07994 * 119.99766 * 0.02562 * 21 20 19 23 23 C 1.38815 * 120.00118 * 179.97438 * 21 20 19 24 24 N 1.31617 * 119.99658 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99928 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.46797 * 60.00604 * 25 23 21 27 27 H 1.48501 * 109.46967 * 180.02562 * 25 23 21 28 28 H 1.48492 * 109.47101 * 300.00546 * 25 23 21 29 29 C 1.53780 * 113.61286 * 301.52768 * 17 2 1 30 30 H 1.08996 * 109.47235 * 89.99735 * 1 2 3 31 31 H 1.09003 * 109.46561 * 209.99490 * 1 2 3 32 32 H 1.09000 * 109.47355 * 329.99531 * 1 2 3 33 33 H 1.09008 * 109.47222 * 59.99847 * 5 3 2 34 34 H 1.08994 * 109.47135 * 300.00076 * 5 3 2 35 35 H 1.08995 * 109.47197 * 59.99591 * 6 5 3 36 36 H 1.09005 * 109.46468 * 299.99939 * 6 5 3 37 37 H 1.08999 * 110.50826 * 24.16049 * 9 7 6 38 38 H 1.09000 * 110.63108 * 261.51047 * 9 7 6 39 39 H 1.09002 * 110.50990 * 241.35711 * 10 9 7 40 40 H 1.08996 * 110.51179 * 118.64866 * 10 9 7 41 41 H 0.97009 * 119.99740 * 0.02562 * 14 13 11 42 42 H 0.97003 * 120.00439 * 179.97438 * 14 13 11 43 43 H 1.09001 * 112.85138 * 170.33191 * 17 2 1 44 44 H 1.09006 * 113.61140 * 334.56932 * 18 17 2 45 45 H 1.08999 * 113.61682 * 105.47094 * 18 17 2 46 46 H 1.08994 * 113.53594 * 270.81082 * 19 18 17 47 47 H 0.97006 * 120.00643 * 287.44025 * 20 19 18 48 48 H 0.97003 * 119.99367 * 179.97438 * 24 23 21 49 49 H 1.09005 * 113.61799 * 254.52611 * 29 17 2 50 50 H 1.09000 * 113.61434 * 25.34522 * 29 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3516 1.1673 -0.0005 5 6 1.3853 2.4723 0.0006 6 6 2.3794 3.6353 0.0011 7 6 1.6144 4.9603 0.0023 8 1 0.9279 5.0023 0.8481 9 6 2.5989 6.1498 0.0493 10 6 1.9436 7.2156 -0.8573 11 6 0.6403 6.5442 -1.3442 12 1 -0.1952 6.8294 -0.7050 13 6 0.3593 6.9210 -2.7761 14 7 0.0260 8.1895 -3.0861 15 8 0.4331 6.0826 -3.6493 16 8 0.8936 5.1263 -1.2378 17 6 2.1976 -1.2686 -0.0006 18 6 1.5592 -2.3483 -0.8903 19 6 1.9076 -3.3557 0.2204 20 7 0.8604 -4.3516 0.4607 21 6 1.0434 -5.6481 0.0595 22 1 1.9598 -5.9364 -0.4337 23 6 0.0513 -6.5918 0.2877 24 7 -1.0654 -6.2404 0.8892 25 14 0.3012 -8.3605 -0.2590 26 1 1.4956 -8.9243 0.4198 27 1 -0.8964 -9.1628 0.0979 28 1 0.5029 -8.4002 -1.7296 29 6 1.8676 -2.1710 1.2001 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3632 -0.8901 0.5138 32 1 -0.3634 0.8899 0.5139 33 1 0.7589 2.5299 0.8909 34 1 0.7583 2.5302 -0.8891 35 1 3.0061 3.5780 -0.8888 36 1 3.0060 3.5772 0.8911 37 1 3.5711 5.8566 -0.3470 38 1 2.7001 6.5246 1.0678 39 1 2.5918 7.4494 -1.7019 40 1 1.7185 8.1164 -0.2865 41 1 -0.0327 8.8601 -2.3876 42 1 -0.1545 8.4321 -4.0078 43 1 3.2667 -1.1399 -0.1692 44 1 0.4875 -2.2147 -1.0381 45 1 2.0977 -2.5207 -1.8222 46 1 2.8974 -3.7988 0.1113 47 1 0.0373 -4.0927 0.9040 48 1 -1.7588 -6.8999 1.0483 49 1 2.6548 -2.2007 1.9535 50 1 0.8810 -1.9879 1.6258 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001508121182.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:11 Heat of formation + Delta-G solvation = -118.911284 kcal Electronic energy + Delta-G solvation = -29195.865269 eV Core-core repulsion = 25029.632198 eV Total energy + Delta-G solvation = -4166.233071 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.45089 -41.15269 -39.62484 -39.20201 -36.18003 -35.02355 -34.83934 -34.34782 -32.92746 -31.94342 -29.95618 -27.97938 -26.85193 -26.49716 -25.86601 -24.03743 -22.84988 -21.98993 -21.47809 -20.63491 -19.96667 -19.04486 -18.68632 -18.20492 -17.84246 -17.61675 -17.21520 -16.92141 -16.36213 -16.30803 -16.07314 -15.69773 -15.30236 -15.21792 -15.01575 -14.62402 -14.56631 -14.25057 -14.16128 -13.78618 -13.48118 -13.30522 -13.22094 -13.13735 -12.87879 -12.74639 -12.69847 -12.60027 -12.28583 -12.16018 -12.02110 -11.95483 -11.89189 -11.68229 -11.63930 -11.41772 -11.06528 -10.88132 -10.72149 -10.71742 -10.63783 -9.58311 -8.99451 -7.95070 -5.23325 1.48026 1.50488 1.54155 1.56513 1.62324 2.04068 2.21013 2.57037 3.09783 3.36221 3.43572 3.63612 3.74375 3.78785 3.81918 3.92660 3.94795 3.97736 4.11981 4.18603 4.21113 4.27526 4.30646 4.33107 4.45451 4.57052 4.63220 4.69425 4.74558 4.75456 4.84028 4.87217 4.92915 4.97317 5.04148 5.07158 5.09409 5.12152 5.14825 5.29894 5.43140 5.51856 5.66307 5.78083 5.92696 6.26856 6.45477 6.46989 7.17689 7.32362 7.33640 8.08253 8.32980 9.27693 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.024505 B = 0.001725 C = 0.001665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.345494 B =16224.809205 C =16809.311086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.602 5.602 3 C 0.505 3.495 4 O -0.588 6.588 5 C -0.128 4.128 6 C -0.094 4.094 7 C 0.072 3.928 8 H 0.102 0.898 9 C -0.150 4.150 10 C -0.136 4.136 11 C 0.051 3.949 12 H 0.130 0.870 13 C 0.514 3.486 14 N -0.828 5.828 15 O -0.589 6.589 16 O -0.378 6.378 17 C 0.129 3.871 18 C -0.164 4.164 19 C 0.153 3.847 20 N -0.721 5.721 21 C -0.248 4.248 22 H 0.075 0.925 23 C -0.073 4.073 24 N -0.967 5.967 25 Si 0.972 3.028 26 H -0.278 1.278 27 H -0.295 1.295 28 H -0.280 1.280 29 C -0.146 4.146 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.102 0.898 33 H 0.123 0.877 34 H 0.098 0.902 35 H 0.048 0.952 36 H 0.089 0.911 37 H 0.066 0.934 38 H 0.110 0.890 39 H 0.067 0.933 40 H 0.126 0.874 41 H 0.422 0.578 42 H 0.410 0.590 43 H 0.104 0.896 44 H 0.079 0.921 45 H 0.058 0.942 46 H 0.077 0.923 47 H 0.376 0.624 48 H 0.252 0.748 49 H 0.070 0.930 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.709 37.233 0.890 37.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.333 5.333 3 C 0.296 3.704 4 O -0.470 6.470 5 C -0.168 4.168 6 C -0.132 4.132 7 C 0.015 3.985 8 H 0.120 0.880 9 C -0.187 4.187 10 C -0.174 4.174 11 C -0.010 4.010 12 H 0.147 0.853 13 C 0.299 3.701 14 N -0.394 5.394 15 O -0.468 6.468 16 O -0.297 6.297 17 C 0.025 3.975 18 C -0.205 4.205 19 C 0.042 3.958 20 N -0.359 5.359 21 C -0.380 4.380 22 H 0.093 0.907 23 C -0.265 4.265 24 N -0.617 5.617 25 Si 0.801 3.199 26 H -0.204 1.204 27 H -0.221 1.221 28 H -0.206 1.206 29 C -0.186 4.186 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.121 0.879 33 H 0.141 0.859 34 H 0.116 0.884 35 H 0.067 0.933 36 H 0.107 0.893 37 H 0.085 0.915 38 H 0.129 0.871 39 H 0.086 0.914 40 H 0.145 0.855 41 H 0.254 0.746 42 H 0.242 0.758 43 H 0.122 0.878 44 H 0.098 0.902 45 H 0.077 0.923 46 H 0.095 0.905 47 H 0.208 0.792 48 H 0.060 0.940 49 H 0.088 0.912 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.427 36.227 0.265 36.309 hybrid contribution -0.358 -0.910 -0.449 1.076 sum 2.069 35.317 -0.184 35.378 Atomic orbital electron populations 1.21974 0.77834 1.04511 1.02750 1.47962 1.08012 1.05279 1.72017 1.21430 0.87814 0.86556 0.74597 1.90640 1.15927 1.88145 1.52240 1.21689 0.99353 0.89801 1.05927 1.21369 0.96961 0.91725 1.03111 1.23265 0.93280 0.94807 0.87131 0.88029 1.23021 0.99051 0.94373 1.02293 1.22937 0.94087 1.00113 1.00232 1.23113 1.01234 0.83600 0.93050 0.85294 1.20805 0.75356 0.82975 0.90997 1.43572 1.71634 1.09677 1.14555 1.90783 1.53054 1.51402 1.51562 1.89282 1.76507 1.22166 1.41781 1.22232 0.96921 0.81328 0.97066 1.24132 1.01005 0.96538 0.98858 1.21651 0.92436 0.87352 0.94326 1.42458 1.17821 1.05692 1.69916 1.19664 1.01052 0.86883 1.30413 0.90691 1.25536 0.96560 1.02172 1.02244 1.69795 1.07997 1.34708 1.49209 0.85235 0.76570 0.80074 0.78012 1.20443 1.22085 1.20617 1.23730 1.02144 0.95511 0.97197 0.92119 0.91102 0.87919 0.85912 0.88351 0.93263 0.89295 0.91537 0.87148 0.91437 0.85547 0.74635 0.75841 0.87782 0.90248 0.92286 0.90543 0.79179 0.93975 0.91160 0.89806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.58 8.84 127.77 1.13 2.71 16 2 N -0.60 -16.83 3.08 -819.65 -2.53 -19.36 16 3 C 0.51 14.35 7.67 87.65 0.67 15.02 16 4 O -0.59 -21.11 15.46 -3.03 -0.05 -21.16 16 5 C -0.13 -2.51 4.17 29.85 0.12 -2.39 16 6 C -0.09 -1.76 4.14 30.59 0.13 -1.63 16 7 C 0.07 0.94 3.27 31.09 0.10 1.04 16 8 H 0.10 0.78 8.14 -2.38 -0.02 0.76 16 9 C -0.15 -1.28 6.63 31.61 0.21 -1.07 16 10 C -0.14 -0.81 6.62 31.61 0.21 -0.60 16 11 C 0.05 0.56 3.71 30.35 0.11 0.68 16 12 H 0.13 0.51 8.14 -2.39 -0.02 0.49 16 13 C 0.51 8.26 7.34 87.66 0.64 8.90 16 14 N -0.83 -4.33 8.87 -173.53 -1.54 -5.87 16 15 O -0.59 -17.37 17.39 15.32 0.27 -17.11 16 16 O -0.38 -7.38 10.26 -130.63 -1.34 -8.72 16 17 C 0.13 4.16 4.21 45.52 0.19 4.36 16 18 C -0.16 -5.85 7.34 31.18 0.23 -5.62 16 19 C 0.15 6.16 4.48 45.58 0.20 6.37 16 20 N -0.72 -36.36 5.40 -320.18 -1.73 -38.10 16 21 C -0.25 -13.88 9.97 84.03 0.84 -13.04 16 22 H 0.08 4.04 7.83 -2.91 -0.02 4.02 16 23 C -0.07 -4.18 5.50 84.86 0.47 -3.71 16 24 N -0.97 -58.75 13.06 21.65 0.28 -58.47 16 25 Si 0.97 46.38 29.55 68.60 2.03 48.40 16 26 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 27 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 28 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 29 C -0.15 -4.92 7.36 31.12 0.23 -4.69 16 30 H 0.06 1.32 8.14 -2.39 -0.02 1.31 16 31 H 0.07 1.74 6.33 -2.39 -0.02 1.72 16 32 H 0.10 1.57 6.44 -2.39 -0.02 1.55 16 33 H 0.12 1.62 7.40 -2.38 -0.02 1.60 16 34 H 0.10 2.02 7.88 -2.39 -0.02 2.01 16 35 H 0.05 1.22 8.10 -2.39 -0.02 1.20 16 36 H 0.09 1.58 8.10 -2.38 -0.02 1.56 16 37 H 0.07 0.80 7.87 -2.39 -0.02 0.78 16 38 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 39 H 0.07 0.59 7.87 -2.39 -0.02 0.57 16 40 H 0.13 -0.25 8.14 -2.39 -0.02 -0.27 16 41 H 0.42 -1.30 8.83 -92.70 -0.82 -2.12 16 42 H 0.41 1.89 8.93 -92.71 -0.83 1.07 16 43 H 0.10 3.59 7.21 -2.39 -0.02 3.57 16 44 H 0.08 2.90 6.81 -2.38 -0.02 2.89 16 45 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 46 H 0.08 3.09 8.10 -2.39 -0.02 3.07 16 47 H 0.38 20.02 7.93 -92.70 -0.73 19.29 16 48 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 49 H 0.07 2.27 8.14 -2.38 -0.02 2.26 16 50 H 0.08 2.80 6.80 -2.39 -0.02 2.79 16 Total: -1.00 -84.71 403.40 -0.52 -85.23 By element: Atomic # 1 Polarization: 30.24 SS G_CDS: -1.40 Total: 28.84 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: 5.49 Total: 6.31 kcal Atomic # 7 Polarization: -116.28 SS G_CDS: -5.52 Total: -121.80 kcal Atomic # 8 Polarization: -45.86 SS G_CDS: -1.12 Total: -46.99 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.40 kcal Total: -84.71 -0.52 -85.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001508121182.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.677 kcal (2) G-P(sol) polarization free energy of solvation -84.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds