Wall clock time and date at job start Sat Apr 11 2020 05:48:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42904 * 114.00165 * 2 1 4 4 C 1.53779 * 113.61305 * 150.00143 * 3 2 1 5 5 C 1.53778 * 87.08448 * 89.20295 * 4 3 2 6 6 C 1.50697 * 113.61996 * 139.97778 * 5 4 3 7 7 O 1.21283 * 119.99671 * 1.53073 * 6 5 4 8 8 N 1.34774 * 120.00319 * 181.52494 * 6 5 4 9 9 C 1.46502 * 119.99991 * 179.97438 * 8 6 5 10 10 C 1.52994 * 109.46750 * 180.02562 * 9 8 6 11 11 H 1.09005 * 109.47356 * 294.99759 * 10 9 8 12 12 N 1.46896 * 109.47735 * 55.00286 * 10 9 8 13 13 C 1.46894 * 111.00366 * 222.69924 * 12 10 9 14 14 C 1.50708 * 109.47223 * 186.10999 * 13 12 10 15 15 O 1.21289 * 119.99570 * 359.97438 * 14 13 12 16 16 N 1.34770 * 120.00050 * 179.97438 * 14 13 12 17 17 C 1.37095 * 120.00265 * 180.02562 * 16 14 13 18 18 H 1.08002 * 119.99553 * 359.97438 * 17 16 14 19 19 C 1.38951 * 120.00275 * 180.02562 * 17 16 14 20 20 N 1.31408 * 120.00148 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99984 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46926 * 89.99855 * 21 19 17 23 23 H 1.48498 * 109.47295 * 209.99909 * 21 19 17 24 24 H 1.48503 * 109.47081 * 330.00464 * 21 19 17 25 25 C 1.53002 * 109.46955 * 175.00580 * 10 9 8 26 26 C 1.53009 * 117.49757 * 251.54192 * 25 10 9 27 27 C 1.53001 * 117.49917 * 182.88205 * 25 10 9 28 28 C 1.53781 * 87.17127 * 25.38826 * 5 4 3 29 29 H 1.09000 * 109.46749 * 300.00273 * 1 2 3 30 30 H 1.08999 * 109.46870 * 59.99651 * 1 2 3 31 31 H 1.08991 * 109.47038 * 179.97438 * 1 2 3 32 32 H 1.08995 * 112.84892 * 18.80410 * 3 2 1 33 33 H 1.09003 * 113.61518 * 334.64747 * 4 3 2 34 34 H 1.09008 * 113.61055 * 203.74988 * 4 3 2 35 35 H 1.09005 * 113.61137 * 270.80067 * 5 4 3 36 36 H 0.97002 * 119.99584 * 0.02562 * 8 6 5 37 37 H 1.09006 * 109.46441 * 60.00510 * 9 8 6 38 38 H 1.08997 * 109.47223 * 300.00843 * 9 8 6 39 39 H 1.00902 * 110.99821 * 346.65476 * 12 10 9 40 40 H 1.09003 * 109.47269 * 306.11030 * 13 12 10 41 41 H 1.09001 * 109.47342 * 66.11151 * 13 12 10 42 42 H 0.97004 * 120.00267 * 359.97438 * 16 14 13 43 43 H 0.96992 * 120.00001 * 180.02562 * 20 19 17 44 44 H 1.08998 * 115.55136 * 37.20837 * 25 10 9 45 45 H 1.08997 * 117.49676 * 359.97438 * 26 25 10 46 46 H 1.08996 * 117.49751 * 145.01919 * 26 25 10 47 47 H 1.09003 * 117.49570 * 214.97432 * 27 25 10 48 48 H 1.08993 * 117.50215 * 359.97223 * 27 25 10 49 49 H 1.08994 * 113.61803 * 89.16322 * 28 5 4 50 50 H 1.09008 * 113.61417 * 220.06387 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.3756 1.3718 0.7045 5 6 4.0064 1.0352 -0.6570 6 6 5.2713 1.8029 -0.9427 7 8 5.7107 2.5762 -0.1181 8 7 5.9143 1.6301 -2.1145 9 6 7.1437 2.3769 -2.3924 10 6 7.6671 1.9993 -3.7796 11 1 7.9602 0.9494 -3.7840 12 7 6.6114 2.2171 -4.7775 13 6 6.5568 1.1064 -5.7372 14 6 5.5695 1.4330 -6.8280 15 8 4.9700 2.4872 -6.8075 16 7 5.3529 0.5539 -7.8262 17 6 4.4551 0.8512 -8.8188 18 1 3.9213 1.7898 -8.8005 19 6 4.2313 -0.0555 -9.8477 20 7 4.8806 -1.1978 -9.8696 21 14 3.0076 0.3494 -11.1997 22 1 3.7064 1.0525 -12.3054 23 1 2.4049 -0.9065 -11.7142 24 1 1.9388 1.2242 -10.6542 25 6 8.8791 2.8684 -4.1214 26 6 8.6957 3.9472 -5.1908 27 6 9.5096 2.6891 -5.5038 28 6 2.7536 1.6496 -1.3035 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.3139 2.0789 0.3238 33 1 3.5176 0.5948 1.4556 34 1 3.6305 2.3667 1.0698 35 1 4.1107 -0.0347 -0.8373 36 1 5.5627 1.0119 -2.7741 37 1 7.8949 2.1324 -1.6413 38 1 6.9341 3.4461 -2.3621 39 1 5.7162 2.3548 -4.3326 40 1 7.5439 0.9549 -6.1741 41 1 6.2433 0.1975 -5.2238 42 1 5.8326 -0.2891 -7.8429 43 1 4.7246 -1.8305 -10.5880 44 1 9.5462 3.0930 -3.2892 45 1 7.7118 4.0374 -5.6511 46 1 9.2425 4.8813 -5.0623 47 1 10.5917 2.7962 -5.5811 48 1 9.0615 1.9517 -6.1696 49 1 2.8381 2.7204 -1.4883 50 1 2.3942 1.0964 -2.1713 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566711275.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:28 Heat of formation + Delta-G solvation = -63.002952 kcal Electronic energy + Delta-G solvation = -29811.213430 eV Core-core repulsion = 25647.404726 eV Total energy + Delta-G solvation = -4163.808704 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.65745 -39.24293 -38.45625 -37.67160 -35.85334 -35.16474 -34.07549 -33.28624 -31.25847 -29.89856 -27.42606 -26.42733 -25.98249 -25.69451 -23.93695 -23.22114 -22.04447 -21.02725 -19.99134 -19.59268 -19.21852 -18.05846 -17.84713 -16.47849 -16.34125 -16.07855 -15.92749 -15.79388 -15.39241 -15.18029 -14.93660 -14.53832 -14.42809 -14.20014 -13.99448 -13.64329 -13.58134 -13.35099 -12.74973 -12.60550 -12.41718 -12.32352 -12.12538 -11.89284 -11.72267 -11.66906 -11.53398 -11.22697 -11.10419 -10.99461 -10.98560 -10.71420 -10.42054 -10.25017 -10.12792 -9.92054 -9.82137 -9.67291 -9.53709 -9.22297 -8.50964 -8.11727 -7.99241 -6.44773 -3.85629 2.49888 3.00545 3.15565 3.24591 3.29954 3.34940 3.85618 3.89526 4.10957 4.19434 4.29925 4.32600 4.46158 4.57810 4.67820 4.90439 4.95916 5.00997 5.06996 5.09646 5.13211 5.13552 5.22270 5.33817 5.36678 5.38294 5.47675 5.48401 5.55383 5.61245 5.69972 5.74079 5.75407 5.79240 5.89931 5.91522 5.96890 6.09846 6.22861 6.29546 6.40893 6.75521 6.90402 7.11055 7.31020 7.52288 7.53557 8.02918 8.08116 8.57842 9.15019 9.50910 10.02236 10.72878 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.007348 B = 0.003181 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3809.568504 B = 8800.853806 C =12065.621981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.369 6.369 3 C 0.062 3.938 4 C -0.115 4.115 5 C -0.131 4.131 6 C 0.526 3.474 7 O -0.542 6.542 8 N -0.731 5.731 9 C 0.113 3.887 10 C 0.106 3.894 11 H 0.062 0.938 12 N -0.660 5.660 13 C 0.046 3.954 14 C 0.441 3.559 15 O -0.580 6.580 16 N -0.563 5.563 17 C -0.299 4.299 18 H 0.103 0.897 19 C 0.023 3.977 20 N -0.901 5.901 21 Si 0.929 3.071 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.270 1.270 25 C -0.153 4.153 26 C -0.156 4.156 27 C -0.178 4.178 28 C -0.143 4.143 29 H 0.042 0.958 30 H 0.044 0.956 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.106 0.894 35 H 0.117 0.883 36 H 0.400 0.600 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.350 0.650 40 H 0.089 0.911 41 H 0.042 0.958 42 H 0.392 0.608 43 H 0.272 0.728 44 H 0.101 0.899 45 H 0.121 0.879 46 H 0.079 0.921 47 H 0.085 0.915 48 H 0.094 0.906 49 H 0.096 0.904 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.290 1.166 18.458 18.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.288 6.288 3 C 0.004 3.996 4 C -0.153 4.153 5 C -0.153 4.153 6 C 0.312 3.688 7 O -0.419 6.419 8 N -0.383 5.383 9 C -0.011 4.011 10 C -0.005 4.005 11 H 0.080 0.920 12 N -0.294 5.294 13 C -0.086 4.086 14 C 0.226 3.774 15 O -0.464 6.464 16 N -0.200 5.200 17 C -0.429 4.429 18 H 0.121 0.879 19 C -0.179 4.179 20 N -0.543 5.543 21 Si 0.756 3.244 22 H -0.204 1.204 23 H -0.209 1.209 24 H -0.194 1.194 25 C -0.172 4.172 26 C -0.193 4.193 27 C -0.215 4.215 28 C -0.181 4.181 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.105 0.895 32 H 0.097 0.903 33 H 0.099 0.901 34 H 0.124 0.876 35 H 0.135 0.865 36 H 0.235 0.765 37 H 0.092 0.908 38 H 0.097 0.903 39 H 0.171 0.829 40 H 0.107 0.893 41 H 0.060 0.940 42 H 0.225 0.775 43 H 0.081 0.919 44 H 0.119 0.881 45 H 0.140 0.860 46 H 0.098 0.902 47 H 0.103 0.897 48 H 0.112 0.888 49 H 0.114 0.886 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.682 2.501 18.525 18.706 hybrid contribution -0.864 -1.330 -0.708 1.737 sum -0.181 1.171 17.818 17.857 Atomic orbital electron populations 1.22835 0.80683 1.02942 1.00164 1.87879 1.19933 1.26406 1.94550 1.23097 0.94662 0.85386 0.96500 1.23098 0.92789 1.03868 0.95513 1.22718 0.91841 1.01122 0.99578 1.20517 0.84889 0.82268 0.81089 1.90680 1.67403 1.37378 1.46428 1.46107 1.27122 1.45957 1.19142 1.21652 0.86071 0.97363 0.95984 1.21238 0.92137 0.98099 0.89013 0.92018 1.59987 1.09030 1.42980 1.17399 1.21894 1.00598 0.91763 0.94372 1.19754 0.86755 0.86095 0.84793 1.90533 1.52512 1.25287 1.78051 1.41864 1.38392 1.18152 1.21609 1.19689 1.17778 1.04367 1.01050 0.87944 1.25250 0.98498 0.95181 0.98936 1.69604 1.42246 1.08387 1.34032 0.85872 0.80240 0.77738 0.80533 1.20385 1.20937 1.19427 1.22175 0.98617 1.03545 0.92898 1.22979 1.03033 0.91567 1.01729 1.22917 0.98388 1.02190 0.98028 1.23439 0.94147 1.01961 0.98533 0.93946 0.93696 0.89474 0.90292 0.90121 0.87593 0.86537 0.76524 0.90834 0.90324 0.82881 0.89333 0.93970 0.77536 0.91861 0.88056 0.86036 0.90203 0.89672 0.88762 0.88599 0.89575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.85 101.05 1.10 1.32 16 2 O -0.37 -3.69 10.63 -35.23 -0.37 -4.07 16 3 C 0.06 0.56 4.38 -25.83 -0.11 0.44 16 4 C -0.11 -1.09 7.23 -25.92 -0.19 -1.28 16 5 C -0.13 -1.31 4.08 -90.96 -0.37 -1.69 16 6 C 0.53 6.37 7.35 -10.99 -0.08 6.28 16 7 O -0.54 -8.28 15.91 5.55 0.09 -8.20 16 8 N -0.73 -7.97 4.91 -60.30 -0.30 -8.27 16 9 C 0.11 1.27 5.17 -4.04 -0.02 1.25 16 10 C 0.11 1.22 2.66 -67.72 -0.18 1.04 16 11 H 0.06 0.68 7.63 -51.93 -0.40 0.28 16 12 N -0.66 -9.53 3.99 -107.99 -0.43 -9.96 16 13 C 0.05 0.74 5.76 -4.98 -0.03 0.71 16 14 C 0.44 9.84 7.84 -10.98 -0.09 9.75 16 15 O -0.58 -15.05 15.91 5.55 0.09 -14.96 16 16 N -0.56 -13.74 5.29 -10.96 -0.06 -13.80 16 17 C -0.30 -8.15 9.68 -14.93 -0.14 -8.29 16 18 H 0.10 2.94 7.16 -52.49 -0.38 2.56 16 19 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 20 N -0.90 -24.05 13.05 55.50 0.72 -23.33 16 21 Si 0.93 20.72 29.55 -169.99 -5.02 15.69 16 22 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 23 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 24 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 25 C -0.15 -1.76 5.69 -90.61 -0.52 -2.28 16 26 C -0.16 -2.07 9.86 -26.69 -0.26 -2.33 16 27 C -0.18 -2.21 10.07 -26.69 -0.27 -2.48 16 28 C -0.14 -1.37 7.47 -25.83 -0.19 -1.56 16 29 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.08 0.60 7.87 -51.93 -0.41 0.19 16 33 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.11 1.06 7.45 -51.92 -0.39 0.67 16 35 H 0.12 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.40 4.01 7.73 -40.82 -0.32 3.69 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.35 5.25 6.88 -39.29 -0.27 4.98 16 40 H 0.09 1.35 5.96 -51.93 -0.31 1.04 16 41 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.39 9.16 7.90 -40.82 -0.32 8.84 16 43 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 44 H 0.10 1.02 8.13 -51.93 -0.42 0.60 16 45 H 0.12 1.99 6.99 -51.93 -0.36 1.62 16 46 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 47 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 48 H 0.09 1.30 5.92 -51.93 -0.31 0.99 16 49 H 0.10 0.93 8.09 -51.93 -0.42 0.51 16 50 H 0.09 0.86 8.14 -51.92 -0.42 0.43 16 LS Contribution 409.72 15.07 6.17 6.17 Total: -1.00 -31.92 409.72 -8.64 -40.56 By element: Atomic # 1 Polarization: 26.83 SS G_CDS: -8.08 Total: 18.75 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: -1.45 Total: 1.40 kcal Atomic # 7 Polarization: -55.29 SS G_CDS: -0.06 Total: -55.36 kcal Atomic # 8 Polarization: -27.03 SS G_CDS: -0.20 Total: -27.22 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -31.92 -8.64 -40.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566711275.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.441 kcal (2) G-P(sol) polarization free energy of solvation -31.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds