Wall clock time and date at job start Sat Apr 11 2020 05:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42900 * 113.99678 * 2 1 4 4 C 1.53001 * 109.47167 * 182.46167 * 3 2 1 5 5 C 1.50704 * 112.90822 * 306.13562 * 4 3 2 6 6 O 1.21284 * 119.99997 * 114.18150 * 5 4 3 7 7 N 1.34776 * 119.99694 * 294.18156 * 5 4 3 8 8 C 1.47427 * 125.64767 * 5.17750 * 7 5 4 9 9 C 1.54914 * 104.82967 * 204.08991 * 8 7 5 10 10 C 1.55159 * 101.57836 * 322.98912 * 9 8 7 11 11 H 1.08996 * 110.72496 * 276.95773 * 10 9 8 12 12 N 1.46908 * 110.71660 * 153.86380 * 10 9 8 13 13 C 1.46904 * 110.99716 * 86.45649 * 12 10 9 14 14 C 1.50697 * 109.46816 * 180.02562 * 13 12 10 15 15 O 1.21292 * 120.00299 * 359.97438 * 14 13 12 16 16 N 1.34782 * 119.99822 * 180.02562 * 14 13 12 17 17 C 1.37099 * 120.00042 * 179.97438 * 16 14 13 18 18 H 1.07995 * 119.99734 * 359.97438 * 17 16 14 19 19 C 1.38954 * 119.99815 * 179.97438 * 17 16 14 20 20 N 1.31411 * 120.00124 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99754 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47387 * 89.99574 * 21 19 17 23 23 H 1.48492 * 109.47097 * 209.99855 * 21 19 17 24 24 H 1.48499 * 109.46973 * 329.99587 * 21 19 17 25 25 C 1.47015 * 125.64572 * 184.86404 * 7 5 4 26 26 C 1.53781 * 113.61595 * 174.88061 * 4 3 2 27 27 C 1.53782 * 87.08224 * 220.02030 * 26 4 3 28 28 C 1.53785 * 87.17181 * 25.39059 * 27 26 4 29 29 H 1.08996 * 109.47106 * 299.99821 * 1 2 3 30 30 H 1.08993 * 109.46879 * 60.00509 * 1 2 3 31 31 H 1.09005 * 109.46779 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47361 * 62.46031 * 3 2 1 33 33 H 1.09005 * 109.47280 * 302.45745 * 3 2 1 34 34 H 1.09001 * 110.36576 * 322.92629 * 8 7 5 35 35 H 1.08998 * 110.36761 * 85.25359 * 8 7 5 36 36 H 1.08998 * 111.00518 * 81.06182 * 9 8 7 37 37 H 1.08997 * 111.00366 * 204.91925 * 9 8 7 38 38 H 1.00896 * 111.00052 * 210.40639 * 12 10 9 39 39 H 1.09000 * 109.46646 * 299.99714 * 13 12 10 40 40 H 1.08998 * 109.47491 * 59.99488 * 13 12 10 41 41 H 0.97006 * 119.99961 * 359.97438 * 16 14 13 42 42 H 0.96995 * 120.00183 * 180.02562 * 20 19 17 43 43 H 1.08996 * 109.88768 * 298.39500 * 25 7 5 44 44 H 1.08999 * 109.88332 * 59.56474 * 25 7 5 45 45 H 1.08997 * 113.61365 * 105.47629 * 26 4 3 46 46 H 1.08999 * 113.69028 * 334.57943 * 26 4 3 47 47 H 1.09002 * 113.61605 * 139.97938 * 27 26 4 48 48 H 1.09000 * 113.61746 * 270.80152 * 27 26 4 49 49 H 1.09000 * 113.61334 * 89.16178 * 28 27 26 50 50 H 1.09004 * 113.61313 * 220.05999 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5342 1.1853 -0.0620 5 6 4.0977 0.3037 1.0227 6 8 4.6383 -0.7428 0.7337 7 7 4.0009 0.6783 2.3137 8 6 3.2797 1.8633 2.8127 9 6 3.9529 2.1957 4.1677 10 6 4.2454 0.7780 4.7262 11 1 3.3628 0.3666 5.2159 12 7 5.3846 0.8095 5.6534 13 6 4.9452 1.1386 7.0160 14 6 6.1382 1.1623 7.9364 15 8 7.2455 0.9275 7.5003 16 7 5.9748 1.4432 9.2444 17 6 7.0600 1.4642 10.0819 18 1 8.0458 1.2552 9.6936 19 6 6.8915 1.7544 11.4304 20 7 5.6920 2.0091 11.9027 21 14 8.3701 1.7823 12.5716 22 1 8.9448 3.1511 12.6038 23 1 7.9466 1.3908 13.9399 24 1 9.3943 0.8269 12.0781 25 6 4.5916 -0.0307 3.4581 26 6 4.2540 2.5380 -0.1924 27 6 5.2098 1.8453 -1.1782 28 6 4.0713 0.8523 -1.4659 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.7239 1.8307 0.9112 33 1 1.6541 1.8618 -0.8672 34 1 3.3925 2.6962 2.1187 35 1 2.2249 1.6313 2.9600 36 1 4.8765 2.7550 4.0184 37 1 3.2699 2.7394 4.8204 38 1 5.8883 -0.0645 5.6371 39 1 4.4667 2.1180 7.0168 40 1 4.2350 0.3869 7.3603 41 1 5.0892 1.6305 9.5933 42 1 5.5744 2.2121 12.8439 43 1 4.1715 -1.0339 3.5298 44 1 5.6738 -0.0873 3.3407 45 1 4.7380 2.8655 0.7276 46 1 3.6437 3.3165 -0.6501 47 1 5.4767 2.4637 -2.0352 48 1 6.0761 1.3893 -0.6990 49 1 3.4099 1.1682 -2.2727 50 1 4.4079 -0.1790 -1.5723 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566769246.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:31 Heat of formation + Delta-G solvation = -84.051175 kcal Electronic energy + Delta-G solvation = -29963.158399 eV Core-core repulsion = 25798.436975 eV Total energy + Delta-G solvation = -4164.721424 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.18449 -39.02246 -38.17344 -37.72337 -36.97603 -34.76080 -33.80087 -31.27810 -30.78573 -29.91843 -28.89159 -26.74220 -26.08661 -25.90557 -24.58944 -23.75922 -22.93089 -21.24145 -20.50720 -19.26904 -18.76365 -17.91151 -17.19986 -16.78282 -16.51338 -16.25450 -16.06791 -15.94991 -15.43660 -15.24012 -14.92206 -14.53839 -14.29744 -13.91375 -13.72413 -13.65672 -13.54531 -13.27248 -13.10921 -12.78106 -12.72643 -12.43420 -12.31720 -12.14607 -11.78741 -11.70001 -11.67162 -11.45232 -11.28097 -11.15507 -11.08087 -10.91148 -10.76314 -10.65100 -10.40255 -10.23150 -10.07754 -9.80426 -9.52415 -8.78228 -8.49877 -8.15808 -7.97928 -6.43245 -3.84005 2.50403 2.71669 3.17198 3.25951 3.26271 3.32006 3.88669 3.98495 4.04891 4.17509 4.24444 4.27716 4.45469 4.46942 4.48389 4.67822 4.81375 4.89560 4.97499 4.99697 5.01579 5.05202 5.12916 5.19545 5.21873 5.25499 5.28750 5.30997 5.34897 5.42182 5.57282 5.63540 5.68964 5.76076 5.77842 5.81878 5.83209 5.92915 6.00321 6.06380 6.17667 6.25769 6.72849 7.14550 7.36100 7.54065 7.56309 8.04676 8.06123 8.59437 9.16452 9.52390 10.03727 10.74467 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.024392 B = 0.001935 C = 0.001874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.637101 B =14465.729901 C =14937.354381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.078 3.922 4 C -0.103 4.103 5 C 0.565 3.435 6 O -0.531 6.531 7 N -0.611 5.611 8 C 0.096 3.904 9 C -0.124 4.124 10 C 0.075 3.925 11 H 0.059 0.941 12 N -0.657 5.657 13 C 0.052 3.948 14 C 0.440 3.560 15 O -0.582 6.582 16 N -0.563 5.563 17 C -0.299 4.299 18 H 0.103 0.897 19 C 0.022 3.978 20 N -0.902 5.902 21 Si 0.930 3.070 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.269 1.269 25 C 0.109 3.891 26 C -0.124 4.124 27 C -0.142 4.142 28 C -0.112 4.112 29 H 0.041 0.959 30 H 0.041 0.959 31 H 0.086 0.914 32 H 0.056 0.944 33 H 0.060 0.940 34 H 0.080 0.920 35 H 0.067 0.933 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.353 0.647 39 H 0.087 0.913 40 H 0.045 0.955 41 H 0.392 0.608 42 H 0.271 0.729 43 H 0.068 0.932 44 H 0.080 0.920 45 H 0.079 0.921 46 H 0.094 0.906 47 H 0.074 0.926 48 H 0.084 0.916 49 H 0.087 0.913 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.726 2.689 -24.205 27.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C 0.001 3.999 4 C -0.107 4.107 5 C 0.352 3.648 6 O -0.407 6.407 7 N -0.346 5.346 8 C -0.027 4.027 9 C -0.163 4.163 10 C -0.036 4.036 11 H 0.077 0.923 12 N -0.290 5.290 13 C -0.081 4.081 14 C 0.226 3.774 15 O -0.466 6.466 16 N -0.200 5.200 17 C -0.429 4.429 18 H 0.121 0.879 19 C -0.180 4.180 20 N -0.543 5.543 21 Si 0.757 3.243 22 H -0.204 1.204 23 H -0.209 1.209 24 H -0.194 1.194 25 C -0.014 4.014 26 C -0.161 4.161 27 C -0.179 4.179 28 C -0.150 4.150 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.105 0.895 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.098 0.902 35 H 0.085 0.915 36 H 0.109 0.891 37 H 0.101 0.899 38 H 0.174 0.826 39 H 0.105 0.895 40 H 0.063 0.937 41 H 0.225 0.775 42 H 0.081 0.919 43 H 0.086 0.914 44 H 0.099 0.901 45 H 0.098 0.902 46 H 0.112 0.888 47 H 0.093 0.907 48 H 0.102 0.898 49 H 0.106 0.894 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -12.439 2.437 -24.675 27.741 hybrid contribution -0.758 -0.346 1.328 1.568 sum -13.197 2.091 -23.348 26.901 Atomic orbital electron populations 1.22757 0.80886 1.02993 0.99889 1.87994 1.19689 1.27109 1.95348 1.22524 0.90971 0.85492 1.00902 1.22028 0.94155 0.97847 0.96636 1.19267 0.78652 0.85618 0.81217 1.90691 1.44301 1.23893 1.81782 1.48230 1.53497 1.27463 1.05400 1.22525 0.95986 0.87969 0.96255 1.22889 1.01829 0.97131 0.94409 1.22538 0.93433 0.95502 0.92163 0.92337 1.60158 1.22215 1.40590 1.06051 1.21713 0.96493 1.01460 0.88447 1.19778 0.89880 0.84667 0.83113 1.90535 1.26040 1.54345 1.75712 1.41862 1.10610 1.61245 1.06294 1.19706 0.89509 1.44673 0.88965 0.87903 1.25266 0.97914 0.97177 0.97612 1.69608 1.21398 1.47743 1.15585 0.85850 0.80836 0.78715 0.78857 1.20379 1.20945 1.19409 1.22006 0.99688 0.95362 0.84314 1.23023 0.97949 0.94194 1.00953 1.22863 0.97459 0.98184 0.99413 1.22853 0.97134 1.01611 0.93380 0.94039 0.94025 0.89506 0.92579 0.92174 0.90206 0.91513 0.89094 0.89908 0.82637 0.89507 0.93679 0.77465 0.91870 0.91364 0.90135 0.90216 0.88791 0.90711 0.89752 0.89413 0.89580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.38 -3.95 10.30 -35.23 -0.36 -4.31 16 3 C 0.08 0.62 5.09 37.16 0.19 0.81 16 4 C -0.10 -0.97 0.51 -154.75 -0.08 -1.05 16 5 C 0.56 7.39 6.13 -10.98 -0.07 7.32 16 6 O -0.53 -9.06 16.27 5.55 0.09 -8.97 16 7 N -0.61 -7.14 3.33 -170.51 -0.57 -7.71 16 8 C 0.10 0.82 5.22 -2.52 -0.01 0.81 16 9 C -0.12 -1.23 6.72 -24.58 -0.17 -1.40 16 10 C 0.07 0.88 3.23 -65.87 -0.21 0.67 16 11 H 0.06 0.65 7.89 -51.93 -0.41 0.24 16 12 N -0.66 -10.17 5.93 -106.04 -0.63 -10.79 16 13 C 0.05 0.87 6.02 -4.98 -0.03 0.84 16 14 C 0.44 10.21 7.82 -10.98 -0.09 10.13 16 15 O -0.58 -15.70 15.78 5.55 0.09 -15.61 16 16 N -0.56 -14.10 5.29 -10.96 -0.06 -14.16 16 17 C -0.30 -8.29 9.68 -14.93 -0.14 -8.44 16 18 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 19 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 20 N -0.90 -24.34 13.05 55.50 0.72 -23.61 16 21 Si 0.93 20.99 29.55 -169.99 -5.02 15.96 16 22 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 23 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 24 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 25 C 0.11 1.37 6.41 -3.06 -0.02 1.35 16 26 C -0.12 -0.88 6.24 -25.92 -0.16 -1.04 16 27 C -0.14 -1.14 7.80 -25.92 -0.20 -1.34 16 28 C -0.11 -1.01 7.11 -25.82 -0.18 -1.19 16 29 H 0.04 0.24 8.14 -51.93 -0.42 -0.19 16 30 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.38 6.02 -51.93 -0.31 0.06 16 33 H 0.06 0.35 8.06 -51.93 -0.42 -0.07 16 34 H 0.08 0.55 5.48 -51.93 -0.28 0.26 16 35 H 0.07 0.51 7.65 -51.93 -0.40 0.11 16 36 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.35 5.77 8.15 -39.29 -0.32 5.45 16 39 H 0.09 1.32 8.13 -51.93 -0.42 0.90 16 40 H 0.05 0.68 8.08 -51.93 -0.42 0.26 16 41 H 0.39 9.33 7.90 -40.82 -0.32 9.01 16 42 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 43 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.08 1.13 7.97 -51.93 -0.41 0.72 16 45 H 0.08 0.60 6.88 -51.93 -0.36 0.25 16 46 H 0.09 0.45 8.10 -51.93 -0.42 0.03 16 47 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 49 H 0.09 0.61 8.04 -51.93 -0.42 0.19 16 50 H 0.09 0.98 7.34 -51.93 -0.38 0.60 16 LS Contribution 401.60 15.07 6.05 6.05 Total: -1.00 -34.43 401.60 -8.04 -42.47 By element: Atomic # 1 Polarization: 19.60 SS G_CDS: -8.19 Total: 11.41 kcal Atomic # 6 Polarization: 9.44 SS G_CDS: -0.16 Total: 9.28 kcal Atomic # 7 Polarization: -55.74 SS G_CDS: -0.53 Total: -56.27 kcal Atomic # 8 Polarization: -28.71 SS G_CDS: -0.19 Total: -28.90 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -34.43 -8.04 -42.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566769246.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.584 kcal (2) G-P(sol) polarization free energy of solvation -34.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds