Wall clock time and date at job start Sat Apr 11 2020 05:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42900 * 113.99678 * 2 1 4 4 C 1.53001 * 109.47167 * 182.46167 * 3 2 1 5 5 C 1.50704 * 112.90822 * 306.13562 * 4 3 2 6 6 O 1.21284 * 119.99997 * 114.18150 * 5 4 3 7 7 N 1.34776 * 119.99694 * 294.18156 * 5 4 3 8 8 C 1.47427 * 125.64767 * 5.17750 * 7 5 4 9 9 C 1.54914 * 104.82967 * 204.08991 * 8 7 5 10 10 C 1.55159 * 101.57836 * 322.98912 * 9 8 7 11 11 H 1.08996 * 110.72496 * 276.95773 * 10 9 8 12 12 N 1.46908 * 110.71660 * 153.86380 * 10 9 8 13 13 C 1.46904 * 110.99716 * 86.45649 * 12 10 9 14 14 C 1.50697 * 109.46816 * 180.02562 * 13 12 10 15 15 O 1.21292 * 120.00299 * 359.97438 * 14 13 12 16 16 N 1.34782 * 119.99822 * 180.02562 * 14 13 12 17 17 C 1.37099 * 120.00042 * 179.97438 * 16 14 13 18 18 H 1.07995 * 119.99734 * 359.97438 * 17 16 14 19 19 C 1.38954 * 119.99815 * 179.97438 * 17 16 14 20 20 N 1.31411 * 120.00124 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99754 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47387 * 89.99574 * 21 19 17 23 23 H 1.48492 * 109.47097 * 209.99855 * 21 19 17 24 24 H 1.48499 * 109.46973 * 329.99587 * 21 19 17 25 25 C 1.47015 * 125.64572 * 184.86404 * 7 5 4 26 26 C 1.53781 * 113.61595 * 174.88061 * 4 3 2 27 27 C 1.53782 * 87.08224 * 220.02030 * 26 4 3 28 28 C 1.53785 * 87.17181 * 25.39059 * 27 26 4 29 29 H 1.08996 * 109.47106 * 299.99821 * 1 2 3 30 30 H 1.08993 * 109.46879 * 60.00509 * 1 2 3 31 31 H 1.09005 * 109.46779 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47361 * 62.46031 * 3 2 1 33 33 H 1.09005 * 109.47280 * 302.45745 * 3 2 1 34 34 H 1.09001 * 110.36576 * 322.92629 * 8 7 5 35 35 H 1.08998 * 110.36761 * 85.25359 * 8 7 5 36 36 H 1.08998 * 111.00518 * 81.06182 * 9 8 7 37 37 H 1.08997 * 111.00366 * 204.91925 * 9 8 7 38 38 H 1.00896 * 111.00052 * 210.40639 * 12 10 9 39 39 H 1.09000 * 109.46646 * 299.99714 * 13 12 10 40 40 H 1.08998 * 109.47491 * 59.99488 * 13 12 10 41 41 H 0.97006 * 119.99961 * 359.97438 * 16 14 13 42 42 H 0.96995 * 120.00183 * 180.02562 * 20 19 17 43 43 H 1.08996 * 109.88768 * 298.39500 * 25 7 5 44 44 H 1.08999 * 109.88332 * 59.56474 * 25 7 5 45 45 H 1.08997 * 113.61365 * 105.47629 * 26 4 3 46 46 H 1.08999 * 113.69028 * 334.57943 * 26 4 3 47 47 H 1.09002 * 113.61605 * 139.97938 * 27 26 4 48 48 H 1.09000 * 113.61746 * 270.80152 * 27 26 4 49 49 H 1.09000 * 113.61334 * 89.16178 * 28 27 26 50 50 H 1.09004 * 113.61313 * 220.05999 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5342 1.1853 -0.0620 5 6 4.0977 0.3037 1.0227 6 8 4.6383 -0.7428 0.7337 7 7 4.0009 0.6783 2.3137 8 6 3.2797 1.8633 2.8127 9 6 3.9529 2.1957 4.1677 10 6 4.2454 0.7780 4.7262 11 1 3.3628 0.3666 5.2159 12 7 5.3846 0.8095 5.6534 13 6 4.9452 1.1386 7.0160 14 6 6.1382 1.1623 7.9364 15 8 7.2455 0.9275 7.5003 16 7 5.9748 1.4432 9.2444 17 6 7.0600 1.4642 10.0819 18 1 8.0458 1.2552 9.6936 19 6 6.8915 1.7544 11.4304 20 7 5.6920 2.0091 11.9027 21 14 8.3701 1.7823 12.5716 22 1 8.9448 3.1511 12.6038 23 1 7.9466 1.3908 13.9399 24 1 9.3943 0.8269 12.0781 25 6 4.5916 -0.0307 3.4581 26 6 4.2540 2.5380 -0.1924 27 6 5.2098 1.8453 -1.1782 28 6 4.0713 0.8523 -1.4659 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.7239 1.8307 0.9112 33 1 1.6541 1.8618 -0.8672 34 1 3.3925 2.6962 2.1187 35 1 2.2249 1.6313 2.9600 36 1 4.8765 2.7550 4.0184 37 1 3.2699 2.7394 4.8204 38 1 5.8883 -0.0645 5.6371 39 1 4.4667 2.1180 7.0168 40 1 4.2350 0.3869 7.3603 41 1 5.0892 1.6305 9.5933 42 1 5.5744 2.2121 12.8439 43 1 4.1715 -1.0339 3.5298 44 1 5.6738 -0.0873 3.3407 45 1 4.7380 2.8655 0.7276 46 1 3.6437 3.3165 -0.6501 47 1 5.4767 2.4637 -2.0352 48 1 6.0761 1.3893 -0.6990 49 1 3.4099 1.1682 -2.2727 50 1 4.4079 -0.1790 -1.5723 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566769246.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:30 Heat of formation + Delta-G solvation = -110.789502 kcal Electronic energy + Delta-G solvation = -29964.317860 eV Core-core repulsion = 25798.436975 eV Total energy + Delta-G solvation = -4165.880884 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.00203 -40.28564 -39.54783 -38.55346 -37.84456 -36.21861 -35.56690 -33.27161 -31.81726 -30.64846 -29.81423 -27.89955 -27.04034 -26.56595 -25.84006 -25.02876 -23.63988 -22.03721 -21.48664 -21.05764 -19.91367 -19.58361 -17.96822 -17.84366 -17.58310 -17.21810 -16.88929 -16.79606 -16.72548 -16.34809 -16.19260 -15.87749 -15.62381 -15.28395 -14.99464 -14.68525 -14.43696 -14.30025 -13.96499 -13.81304 -13.63797 -13.49077 -13.34169 -13.32264 -13.16064 -12.85587 -12.75186 -12.53532 -12.41268 -12.26141 -12.15799 -12.11529 -11.90427 -11.83966 -11.50859 -11.39104 -11.29877 -10.87341 -10.53283 -10.35387 -10.01434 -9.74345 -9.41058 -8.46824 -5.95206 1.37943 1.42022 1.54355 1.55802 1.81944 2.05548 2.29435 2.71850 2.90048 3.20560 3.23783 3.42948 3.50135 3.56354 3.66233 3.77221 3.85900 3.97043 4.10913 4.25109 4.30366 4.31421 4.34455 4.42909 4.50711 4.51898 4.53983 4.59139 4.61756 4.64954 4.71414 4.75646 4.76859 4.82874 4.86953 4.98560 5.00249 5.09151 5.13126 5.22059 5.27871 5.41330 5.41851 5.87613 6.08840 6.22086 6.26999 6.47336 6.60386 7.09545 7.12978 7.56510 8.12231 8.70453 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.024392 B = 0.001935 C = 0.001874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.637101 B =14465.729901 C =14937.354381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.420 6.420 3 C 0.077 3.923 4 C -0.108 4.108 5 C 0.554 3.446 6 O -0.587 6.587 7 N -0.612 5.612 8 C 0.097 3.903 9 C -0.119 4.119 10 C 0.080 3.920 11 H 0.077 0.923 12 N -0.671 5.671 13 C 0.068 3.932 14 C 0.437 3.563 15 O -0.626 6.626 16 N -0.572 5.572 17 C -0.334 4.334 18 H 0.077 0.923 19 C -0.012 4.012 20 N -0.919 5.919 21 Si 0.991 3.009 22 H -0.270 1.270 23 H -0.270 1.270 24 H -0.275 1.275 25 C 0.110 3.890 26 C -0.108 4.108 27 C -0.145 4.145 28 C -0.115 4.115 29 H 0.052 0.948 30 H 0.059 0.941 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.089 0.911 34 H 0.104 0.896 35 H 0.088 0.912 36 H 0.075 0.925 37 H 0.107 0.893 38 H 0.344 0.656 39 H 0.112 0.888 40 H 0.070 0.930 41 H 0.398 0.602 42 H 0.278 0.722 43 H 0.060 0.940 44 H 0.055 0.945 45 H 0.075 0.925 46 H 0.132 0.868 47 H 0.097 0.903 48 H 0.053 0.947 49 H 0.115 0.885 50 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.221 5.083 -24.626 29.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.340 6.340 3 C 0.000 4.000 4 C -0.111 4.111 5 C 0.344 3.656 6 O -0.467 6.467 7 N -0.345 5.345 8 C -0.024 4.024 9 C -0.157 4.157 10 C -0.030 4.030 11 H 0.095 0.905 12 N -0.304 5.304 13 C -0.064 4.064 14 C 0.224 3.776 15 O -0.512 6.512 16 N -0.210 5.210 17 C -0.463 4.463 18 H 0.095 0.905 19 C -0.212 4.212 20 N -0.559 5.559 21 Si 0.815 3.185 22 H -0.196 1.196 23 H -0.195 1.195 24 H -0.200 1.200 25 C -0.014 4.014 26 C -0.145 4.145 27 C -0.182 4.182 28 C -0.152 4.152 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.102 0.898 32 H 0.090 0.910 33 H 0.107 0.893 34 H 0.122 0.878 35 H 0.106 0.894 36 H 0.094 0.906 37 H 0.125 0.875 38 H 0.163 0.837 39 H 0.130 0.870 40 H 0.088 0.912 41 H 0.232 0.768 42 H 0.087 0.913 43 H 0.078 0.922 44 H 0.074 0.926 45 H 0.093 0.907 46 H 0.150 0.850 47 H 0.116 0.884 48 H 0.072 0.928 49 H 0.133 0.867 50 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -14.992 4.874 -25.086 29.628 hybrid contribution 0.023 -1.148 1.406 1.816 sum -14.969 3.725 -23.680 28.261 Atomic orbital electron populations 1.22896 0.79314 1.03387 1.01293 1.87958 1.21587 1.28807 1.95662 1.22679 0.89278 0.85007 1.02987 1.22091 0.95663 0.98365 0.94972 1.20098 0.77807 0.85472 0.82212 1.90655 1.46837 1.26501 1.82712 1.48361 1.53153 1.28130 1.04857 1.22753 0.96426 0.87385 0.95879 1.22894 1.01863 0.95579 0.95401 1.22583 0.92544 0.97031 0.90843 0.90477 1.60179 1.23990 1.40358 1.05903 1.21573 0.93581 1.03657 0.87599 1.20908 0.91241 0.82322 0.83105 1.90506 1.28572 1.55681 1.76459 1.41918 1.10194 1.61926 1.06913 1.19640 0.89504 1.46907 0.90270 0.90504 1.26011 1.00660 0.96196 0.98343 1.69659 1.22612 1.47441 1.16236 0.84950 0.77551 0.78750 0.77231 1.19591 1.19502 1.19980 1.21879 0.98303 0.95632 0.85589 1.23062 0.97278 0.93594 1.00537 1.22835 0.96501 0.98354 1.00523 1.22917 0.98091 0.99871 0.94339 0.92889 0.92252 0.89804 0.90991 0.89318 0.87795 0.89383 0.90645 0.87481 0.83722 0.86978 0.91243 0.76835 0.91273 0.92180 0.92646 0.90660 0.85005 0.88438 0.92789 0.86676 0.93172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 113.37 1.25 1.55 16 2 O -0.42 -8.00 10.30 -148.98 -1.54 -9.54 16 3 C 0.08 0.97 5.09 71.98 0.37 1.34 16 4 C -0.11 -1.86 0.51 -52.34 -0.03 -1.88 16 5 C 0.55 14.75 6.13 87.66 0.54 15.29 16 6 O -0.59 -21.54 16.27 -3.04 -0.05 -21.59 16 7 N -0.61 -13.97 3.33 -811.77 -2.70 -16.67 16 8 C 0.10 1.38 5.22 86.86 0.45 1.84 16 9 C -0.12 -2.03 6.72 31.99 0.21 -1.82 16 10 C 0.08 1.78 3.23 46.11 0.15 1.93 16 11 H 0.08 1.49 7.89 -2.39 -0.02 1.47 16 12 N -0.67 -20.48 5.93 -489.41 -2.90 -23.39 16 13 C 0.07 2.19 6.02 85.56 0.52 2.70 16 14 C 0.44 20.42 7.82 87.66 0.69 21.11 16 15 O -0.63 -34.77 15.78 -3.07 -0.05 -34.82 16 16 N -0.57 -28.91 5.29 -306.98 -1.62 -30.53 16 17 C -0.33 -18.88 9.68 84.04 0.81 -18.07 16 18 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16 19 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 20 N -0.92 -48.95 13.05 21.66 0.28 -48.67 16 21 Si 0.99 42.84 29.55 68.60 2.03 44.87 16 22 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 23 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 24 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 25 C 0.11 2.82 6.41 86.73 0.56 3.38 16 26 C -0.11 -1.21 6.24 31.12 0.19 -1.02 16 27 C -0.14 -2.20 7.80 31.12 0.24 -1.96 16 28 C -0.11 -1.99 7.11 31.18 0.22 -1.77 16 29 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 32 H 0.07 0.65 6.02 -2.39 -0.01 0.64 16 33 H 0.09 0.62 8.06 -2.38 -0.02 0.61 16 34 H 0.10 1.01 5.48 -2.39 -0.01 1.00 16 35 H 0.09 0.96 7.65 -2.39 -0.02 0.94 16 36 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.34 11.56 8.15 -89.70 -0.73 10.83 16 39 H 0.11 3.09 8.13 -2.39 -0.02 3.07 16 40 H 0.07 1.94 8.08 -2.39 -0.02 1.92 16 41 H 0.40 18.85 7.90 -92.70 -0.73 18.12 16 42 H 0.28 13.85 8.31 -92.71 -0.77 13.08 16 43 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 44 H 0.06 1.69 7.97 -2.39 -0.02 1.67 16 45 H 0.07 0.95 6.88 -2.39 -0.02 0.93 16 46 H 0.13 0.55 8.10 -2.39 -0.02 0.53 16 47 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 48 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 49 H 0.11 1.32 8.04 -2.39 -0.02 1.30 16 50 H 0.05 1.23 7.34 -2.38 -0.02 1.21 16 Total: -1.00 -79.44 401.60 -0.41 -79.85 By element: Atomic # 1 Polarization: 38.55 SS G_CDS: -0.50 Total: 38.05 kcal Atomic # 6 Polarization: 15.80 SS G_CDS: 6.64 Total: 22.44 kcal Atomic # 7 Polarization: -112.31 SS G_CDS: -6.94 Total: -119.25 kcal Atomic # 8 Polarization: -64.32 SS G_CDS: -1.63 Total: -65.95 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Total: -79.44 -0.41 -79.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566769246.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.940 kcal (2) G-P(sol) polarization free energy of solvation -79.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds