Wall clock time and date at job start Sat Apr 11 2020 05:48:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34780 * 119.99956 * 2 1 4 4 O 1.21280 * 119.99953 * 4.74464 * 3 2 1 5 5 C 1.50699 * 119.99650 * 184.73964 * 3 2 1 6 6 C 1.53170 * 109.54781 * 279.96454 * 5 3 2 7 7 C 1.53106 * 109.16180 * 183.24281 * 6 5 3 8 8 O 1.42907 * 109.48477 * 57.47483 * 7 6 5 9 9 C 1.42903 * 114.09564 * 298.89165 * 8 7 6 10 10 C 1.53090 * 109.41790 * 61.15887 * 9 8 7 11 11 C 1.46497 * 119.99944 * 180.02562 * 2 1 3 12 12 H 1.09002 * 110.35332 * 183.51380 * 11 2 1 13 13 C 1.54597 * 110.31289 * 61.37160 * 11 2 1 14 14 C 1.54938 * 102.92249 * 263.04444 * 13 11 2 15 15 N 1.48806 * 103.34585 * 322.68686 * 14 13 11 16 16 C 1.46899 * 111.18410 * 159.50831 * 15 14 13 17 17 C 1.50706 * 109.47256 * 52.66012 * 16 15 14 18 18 O 1.21287 * 119.99528 * 0.02562 * 17 16 15 19 19 N 1.34777 * 119.99753 * 180.02562 * 17 16 15 20 20 C 1.37098 * 119.99561 * 180.02562 * 19 17 16 21 21 H 1.08001 * 120.00100 * 359.97438 * 20 19 17 22 22 C 1.38947 * 120.00083 * 179.97438 * 20 19 17 23 23 N 1.31416 * 119.99879 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00244 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47200 * 89.99476 * 24 22 20 26 26 H 1.48505 * 109.47198 * 209.99830 * 24 22 20 27 27 H 1.48498 * 109.46811 * 329.99640 * 24 22 20 28 28 C 1.47902 * 105.68222 * 38.97902 * 15 14 13 29 29 H 1.08999 * 109.47108 * 264.38134 * 1 2 3 30 30 H 1.09000 * 109.47083 * 24.37433 * 1 2 3 31 31 H 1.08991 * 109.47277 * 144.37945 * 1 2 3 32 32 H 1.09002 * 109.54428 * 40.14976 * 5 3 2 33 33 H 1.09002 * 109.52286 * 303.06432 * 6 5 3 34 34 H 1.09003 * 109.52081 * 63.24811 * 6 5 3 35 35 H 1.09001 * 109.40491 * 297.49453 * 7 6 5 36 36 H 1.08994 * 109.49340 * 177.51121 * 7 6 5 37 37 H 1.08995 * 109.48137 * 301.17090 * 9 8 7 38 38 H 1.09003 * 109.47883 * 181.14099 * 9 8 7 39 39 H 1.08992 * 109.52615 * 182.48180 * 10 9 8 40 40 H 1.09008 * 109.52180 * 62.29025 * 10 9 8 41 41 H 1.09004 * 110.71868 * 21.40276 * 13 11 2 42 42 H 1.08998 * 110.72559 * 144.50307 * 13 11 2 43 43 H 1.08997 * 110.66634 * 81.01816 * 14 13 11 44 44 H 1.08998 * 110.66239 * 203.98262 * 14 13 11 45 45 H 1.08997 * 109.47512 * 172.66547 * 16 15 14 46 46 H 1.09006 * 109.47485 * 292.66100 * 16 15 14 47 47 H 0.96993 * 120.00391 * 359.97438 * 19 17 16 48 48 H 0.97000 * 119.99748 * 180.02562 * 23 22 20 49 49 H 1.08995 * 109.91709 * 215.45224 * 28 15 14 50 50 H 1.09001 * 109.91512 * 94.35324 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5356 2.2157 0.0869 5 6 3.6420 1.1694 -0.1078 6 6 4.2546 0.8618 1.2619 7 6 5.7799 0.9460 1.1607 8 8 6.1558 2.2432 0.6937 9 6 5.6509 2.5652 -0.6038 10 6 4.1204 2.5483 -0.5729 11 6 2.1975 -1.2687 -0.0006 12 1 3.2704 -1.0870 0.0621 13 6 1.8642 -2.0802 -1.2735 14 6 0.7621 -3.0537 -0.7852 15 7 1.1993 -3.4038 0.5934 16 6 0.0776 -3.9152 1.3922 17 6 -0.5969 -5.0395 0.6492 18 8 -0.1835 -5.3814 -0.4386 19 7 -1.6595 -5.6649 1.1934 20 6 -2.2728 -6.6881 0.5177 21 1 -1.9047 -6.9926 -0.4509 22 6 -3.3679 -7.3333 1.0789 23 7 -3.8155 -6.9631 2.2578 24 14 -4.2040 -8.7269 0.1579 25 1 -3.5682 -10.0167 0.5283 26 1 -5.6444 -8.7638 0.5173 27 1 -4.0641 -8.5079 -1.3042 28 6 1.7356 -2.1530 1.1725 29 1 -0.3633 -0.1006 1.0227 30 1 -0.3633 0.9361 -0.4241 31 1 -0.3633 -0.8353 -0.5985 32 1 3.9571 0.4128 -0.8264 33 1 3.8985 1.5890 1.9918 34 1 3.9636 -0.1412 1.5741 35 1 6.1388 0.1901 0.4621 36 1 6.2198 0.7715 2.1425 37 1 6.0080 1.8306 -1.3254 38 1 5.9977 3.5573 -0.8929 39 1 3.7336 2.7503 -1.5716 40 1 3.7616 3.3106 0.1188 41 1 1.4821 -1.4272 -2.0582 42 1 2.7398 -2.6280 -1.6220 43 1 -0.2079 -2.5570 -0.7639 44 1 0.7249 -3.9408 -1.4174 45 1 0.4503 -4.2834 2.3481 46 1 -0.6397 -3.1132 1.5667 47 1 -1.9899 -5.3917 2.0635 48 1 -4.5798 -7.4138 2.6497 49 1 2.5806 -2.3776 1.8234 50 1 0.9567 -1.6421 1.7385 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567901875.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:45 Heat of formation + Delta-G solvation = -100.933658 kcal Electronic energy + Delta-G solvation = -30692.456945 eV Core-core repulsion = 26527.003442 eV Total energy + Delta-G solvation = -4165.453503 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.02363 -39.50600 -38.69788 -37.66371 -35.03229 -34.10128 -33.90381 -31.54537 -31.51012 -30.98228 -28.88190 -27.96617 -26.59727 -25.25183 -24.23143 -23.95428 -21.75975 -21.21570 -20.86755 -19.39012 -18.96156 -18.00016 -17.68742 -16.78755 -16.42509 -16.14910 -15.94673 -15.66542 -15.25350 -15.15102 -14.96500 -14.56190 -14.31693 -14.28157 -14.00891 -13.78096 -13.45132 -13.16427 -12.87557 -12.71272 -12.53306 -12.44211 -12.16883 -12.06133 -11.92716 -11.82534 -11.68977 -11.59440 -11.26758 -11.17761 -11.10521 -10.89156 -10.87712 -10.78530 -10.43350 -10.27954 -10.22397 -9.71711 -9.54950 -8.90809 -8.47030 -8.08358 -7.96702 -6.47784 -3.88946 2.34787 2.70393 3.13448 3.22835 3.28016 3.49385 3.81655 3.94620 4.09667 4.23850 4.29761 4.33902 4.42553 4.50843 4.57161 4.75350 4.82695 4.85986 5.02451 5.03903 5.07859 5.18209 5.18766 5.21164 5.29159 5.31813 5.35633 5.40056 5.43308 5.51757 5.63171 5.64961 5.67947 5.72444 5.78065 5.87900 5.89000 5.89487 6.13806 6.19477 6.25698 6.56396 6.79619 7.05103 7.15426 7.18540 7.49478 7.92660 7.99187 8.54311 9.11397 9.46687 9.97732 10.69707 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.028488 B = 0.002136 C = 0.002102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.618521 B =13107.432190 C =13319.458163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.605 5.605 3 C 0.520 3.480 4 O -0.540 6.540 5 C -0.110 4.110 6 C -0.149 4.149 7 C 0.063 3.937 8 O -0.382 6.382 9 C 0.061 3.939 10 C -0.137 4.137 11 C 0.120 3.880 12 H 0.103 0.897 13 C -0.139 4.139 14 C 0.037 3.963 15 N -0.491 5.491 16 C 0.037 3.963 17 C 0.441 3.559 18 O -0.581 6.581 19 N -0.560 5.560 20 C -0.300 4.300 21 H 0.104 0.896 22 C 0.023 3.977 23 N -0.900 5.900 24 Si 0.931 3.069 25 H -0.277 1.277 26 H -0.284 1.284 27 H -0.270 1.270 28 C 0.022 3.978 29 H 0.054 0.946 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.096 0.904 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.054 0.946 36 H 0.099 0.901 37 H 0.052 0.948 38 H 0.097 0.903 39 H 0.077 0.923 40 H 0.084 0.916 41 H 0.074 0.926 42 H 0.086 0.914 43 H 0.039 0.961 44 H 0.120 0.880 45 H 0.091 0.909 46 H 0.048 0.952 47 H 0.392 0.608 48 H 0.272 0.728 49 H 0.085 0.915 50 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.032 16.281 -2.299 22.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.338 5.338 3 C 0.308 3.692 4 O -0.416 6.416 5 C -0.131 4.131 6 C -0.187 4.187 7 C -0.014 4.014 8 O -0.301 6.301 9 C -0.016 4.016 10 C -0.176 4.176 11 C 0.016 3.984 12 H 0.121 0.879 13 C -0.178 4.178 14 C -0.090 4.090 15 N -0.215 5.215 16 C -0.095 4.095 17 C 0.226 3.774 18 O -0.466 6.466 19 N -0.196 5.196 20 C -0.430 4.430 21 H 0.121 0.879 22 C -0.179 4.179 23 N -0.541 5.541 24 Si 0.758 3.242 25 H -0.203 1.203 26 H -0.209 1.209 27 H -0.194 1.194 28 C -0.107 4.107 29 H 0.073 0.927 30 H 0.097 0.903 31 H 0.094 0.906 32 H 0.114 0.886 33 H 0.098 0.902 34 H 0.101 0.899 35 H 0.073 0.927 36 H 0.117 0.883 37 H 0.070 0.930 38 H 0.115 0.885 39 H 0.095 0.905 40 H 0.103 0.897 41 H 0.093 0.907 42 H 0.104 0.896 43 H 0.057 0.943 44 H 0.138 0.862 45 H 0.109 0.891 46 H 0.066 0.934 47 H 0.226 0.774 48 H 0.082 0.918 49 H 0.103 0.897 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 16.286 16.236 -2.755 23.161 hybrid contribution -1.741 -0.287 0.214 1.777 sum 14.545 15.949 -2.540 21.734 Atomic orbital electron populations 1.21779 0.79198 1.03650 1.02037 1.47997 1.07047 1.05713 1.73018 1.20555 0.89740 0.83147 0.75713 1.90689 1.70281 1.31190 1.49475 1.21392 0.92082 1.00186 0.99477 1.22257 0.96975 1.03504 0.95962 1.22582 0.93208 0.85096 1.00488 1.87955 1.74095 1.34133 1.33885 1.22618 0.92608 1.01502 0.84822 1.22055 0.96220 0.96157 1.03120 1.22222 0.96741 0.83070 0.96342 0.87866 1.23009 1.00793 0.97770 0.96231 1.23617 0.94686 0.99682 0.91037 1.64708 1.29963 1.24590 1.02283 1.22105 0.92273 0.97327 0.97787 1.19666 0.83397 0.86401 0.87887 1.90438 1.66152 1.67910 1.22130 1.41855 1.26495 1.31319 1.19955 1.19692 1.10149 1.09681 1.03427 0.87855 1.25281 0.97224 0.99230 0.96178 1.69612 1.26164 1.42281 1.16059 0.85850 0.78079 0.80649 0.79671 1.20336 1.20913 1.19410 1.23307 1.00748 0.90322 0.96365 0.92727 0.90304 0.90580 0.88639 0.90184 0.89895 0.92736 0.88291 0.92992 0.88463 0.90458 0.89721 0.90743 0.89578 0.94313 0.86186 0.89131 0.93432 0.77445 0.91793 0.89654 0.92935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.87 9.43 59.85 0.56 1.43 16 2 N -0.60 -6.58 2.75 -172.38 -0.47 -7.05 16 3 C 0.52 6.01 6.85 -10.98 -0.08 5.94 16 4 O -0.54 -8.13 15.51 5.56 0.09 -8.04 16 5 C -0.11 -0.93 1.73 -91.59 -0.16 -1.09 16 6 C -0.15 -1.11 5.12 -26.59 -0.14 -1.25 16 7 C 0.06 0.43 6.84 37.21 0.25 0.68 16 8 O -0.38 -3.39 10.77 -35.23 -0.38 -3.77 16 9 C 0.06 0.43 6.84 37.20 0.25 0.69 16 10 C -0.14 -1.15 4.95 -26.59 -0.13 -1.28 16 11 C 0.12 1.19 2.75 -66.57 -0.18 1.01 16 12 H 0.10 0.81 4.55 -51.93 -0.24 0.57 16 13 C -0.14 -1.54 6.24 -24.87 -0.16 -1.70 16 14 C 0.04 0.55 4.94 -1.74 -0.01 0.54 16 15 N -0.49 -7.45 5.26 -231.65 -1.22 -8.67 16 16 C 0.04 0.62 5.52 -4.97 -0.03 0.59 16 17 C 0.44 9.89 7.50 -10.98 -0.08 9.81 16 18 O -0.58 -14.66 13.12 5.55 0.07 -14.59 16 19 N -0.56 -13.73 5.29 -10.96 -0.06 -13.79 16 20 C -0.30 -8.12 9.68 -14.93 -0.14 -8.27 16 21 H 0.10 2.93 7.16 -52.49 -0.38 2.55 16 22 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.04 13.05 55.50 0.72 -23.31 16 24 Si 0.93 20.63 29.55 -169.99 -5.02 15.60 16 25 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 26 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 27 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 28 C 0.02 0.25 6.17 -2.75 -0.02 0.23 16 29 H 0.05 0.62 7.58 -51.93 -0.39 0.23 16 30 H 0.08 0.94 7.33 -51.93 -0.38 0.56 16 31 H 0.08 0.88 5.11 -51.93 -0.27 0.61 16 32 H 0.10 0.67 6.96 -51.93 -0.36 0.31 16 33 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.08 0.54 6.56 -51.93 -0.34 0.20 16 35 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 36 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.08 0.86 7.80 -51.92 -0.40 0.46 16 41 H 0.07 0.79 8.05 -51.93 -0.42 0.37 16 42 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.04 0.60 5.90 -51.93 -0.31 0.30 16 44 H 0.12 2.23 6.01 -51.93 -0.31 1.92 16 45 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 46 H 0.05 0.74 7.81 -51.93 -0.41 0.34 16 47 H 0.39 9.25 7.90 -40.82 -0.32 8.93 16 48 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 49 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 50 H 0.05 0.62 6.25 -51.93 -0.32 0.29 16 LS Contribution 383.23 15.07 5.78 5.78 Total: -1.00 -31.97 383.23 -8.43 -40.39 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: -7.79 Total: 9.61 kcal Atomic # 6 Polarization: 7.98 SS G_CDS: -0.14 Total: 7.84 kcal Atomic # 7 Polarization: -51.79 SS G_CDS: -1.03 Total: -52.82 kcal Atomic # 8 Polarization: -26.18 SS G_CDS: -0.22 Total: -26.40 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.97 -8.43 -40.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567901875.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.542 kcal (2) G-P(sol) polarization free energy of solvation -31.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds