Wall clock time and date at job start Sat Apr 11 2020 05:48:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34780 * 119.99956 * 2 1 4 4 O 1.21280 * 119.99953 * 4.74464 * 3 2 1 5 5 C 1.50699 * 119.99650 * 184.73964 * 3 2 1 6 6 C 1.53170 * 109.54781 * 279.96454 * 5 3 2 7 7 C 1.53106 * 109.16180 * 183.24281 * 6 5 3 8 8 O 1.42907 * 109.48477 * 57.47483 * 7 6 5 9 9 C 1.42903 * 114.09564 * 298.89165 * 8 7 6 10 10 C 1.53090 * 109.41790 * 61.15887 * 9 8 7 11 11 C 1.46497 * 119.99944 * 180.02562 * 2 1 3 12 12 H 1.09002 * 110.35332 * 183.51380 * 11 2 1 13 13 C 1.54597 * 110.31289 * 61.37160 * 11 2 1 14 14 C 1.54938 * 102.92249 * 263.04444 * 13 11 2 15 15 N 1.48806 * 103.34585 * 322.68686 * 14 13 11 16 16 C 1.46899 * 111.18410 * 159.50831 * 15 14 13 17 17 C 1.50706 * 109.47256 * 52.66012 * 16 15 14 18 18 O 1.21287 * 119.99528 * 0.02562 * 17 16 15 19 19 N 1.34777 * 119.99753 * 180.02562 * 17 16 15 20 20 C 1.37098 * 119.99561 * 180.02562 * 19 17 16 21 21 H 1.08001 * 120.00100 * 359.97438 * 20 19 17 22 22 C 1.38947 * 120.00083 * 179.97438 * 20 19 17 23 23 N 1.31416 * 119.99879 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00244 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47200 * 89.99476 * 24 22 20 26 26 H 1.48505 * 109.47198 * 209.99830 * 24 22 20 27 27 H 1.48498 * 109.46811 * 329.99640 * 24 22 20 28 28 C 1.47902 * 105.68222 * 38.97902 * 15 14 13 29 29 H 1.08999 * 109.47108 * 264.38134 * 1 2 3 30 30 H 1.09000 * 109.47083 * 24.37433 * 1 2 3 31 31 H 1.08991 * 109.47277 * 144.37945 * 1 2 3 32 32 H 1.09002 * 109.54428 * 40.14976 * 5 3 2 33 33 H 1.09002 * 109.52286 * 303.06432 * 6 5 3 34 34 H 1.09003 * 109.52081 * 63.24811 * 6 5 3 35 35 H 1.09001 * 109.40491 * 297.49453 * 7 6 5 36 36 H 1.08994 * 109.49340 * 177.51121 * 7 6 5 37 37 H 1.08995 * 109.48137 * 301.17090 * 9 8 7 38 38 H 1.09003 * 109.47883 * 181.14099 * 9 8 7 39 39 H 1.08992 * 109.52615 * 182.48180 * 10 9 8 40 40 H 1.09008 * 109.52180 * 62.29025 * 10 9 8 41 41 H 1.09004 * 110.71868 * 21.40276 * 13 11 2 42 42 H 1.08998 * 110.72559 * 144.50307 * 13 11 2 43 43 H 1.08997 * 110.66634 * 81.01816 * 14 13 11 44 44 H 1.08998 * 110.66239 * 203.98262 * 14 13 11 45 45 H 1.08997 * 109.47512 * 172.66547 * 16 15 14 46 46 H 1.09006 * 109.47485 * 292.66100 * 16 15 14 47 47 H 0.96993 * 120.00391 * 359.97438 * 19 17 16 48 48 H 0.97000 * 119.99748 * 180.02562 * 23 22 20 49 49 H 1.08995 * 109.91709 * 215.45224 * 28 15 14 50 50 H 1.09001 * 109.91512 * 94.35324 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5356 2.2157 0.0869 5 6 3.6420 1.1694 -0.1078 6 6 4.2546 0.8618 1.2619 7 6 5.7799 0.9460 1.1607 8 8 6.1558 2.2432 0.6937 9 6 5.6509 2.5652 -0.6038 10 6 4.1204 2.5483 -0.5729 11 6 2.1975 -1.2687 -0.0006 12 1 3.2704 -1.0870 0.0621 13 6 1.8642 -2.0802 -1.2735 14 6 0.7621 -3.0537 -0.7852 15 7 1.1993 -3.4038 0.5934 16 6 0.0776 -3.9152 1.3922 17 6 -0.5969 -5.0395 0.6492 18 8 -0.1835 -5.3814 -0.4386 19 7 -1.6595 -5.6649 1.1934 20 6 -2.2728 -6.6881 0.5177 21 1 -1.9047 -6.9926 -0.4509 22 6 -3.3679 -7.3333 1.0789 23 7 -3.8155 -6.9631 2.2578 24 14 -4.2040 -8.7269 0.1579 25 1 -3.5682 -10.0167 0.5283 26 1 -5.6444 -8.7638 0.5173 27 1 -4.0641 -8.5079 -1.3042 28 6 1.7356 -2.1530 1.1725 29 1 -0.3633 -0.1006 1.0227 30 1 -0.3633 0.9361 -0.4241 31 1 -0.3633 -0.8353 -0.5985 32 1 3.9571 0.4128 -0.8264 33 1 3.8985 1.5890 1.9918 34 1 3.9636 -0.1412 1.5741 35 1 6.1388 0.1901 0.4621 36 1 6.2198 0.7715 2.1425 37 1 6.0080 1.8306 -1.3254 38 1 5.9977 3.5573 -0.8929 39 1 3.7336 2.7503 -1.5716 40 1 3.7616 3.3106 0.1188 41 1 1.4821 -1.4272 -2.0582 42 1 2.7398 -2.6280 -1.6220 43 1 -0.2079 -2.5570 -0.7639 44 1 0.7249 -3.9408 -1.4174 45 1 0.4503 -4.2834 2.3481 46 1 -0.6397 -3.1132 1.5667 47 1 -1.9899 -5.3917 2.0635 48 1 -4.5798 -7.4138 2.6497 49 1 2.5806 -2.3776 1.8234 50 1 0.9567 -1.6421 1.7385 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567901875.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:44 Heat of formation + Delta-G solvation = -124.942739 kcal Electronic energy + Delta-G solvation = -30693.498056 eV Core-core repulsion = 26527.003442 eV Total energy + Delta-G solvation = -4166.494615 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.89088 -40.64981 -39.70319 -39.00722 -36.29886 -35.68718 -34.76486 -33.34963 -32.28001 -32.07242 -29.86080 -28.94442 -28.00964 -26.19308 -25.74806 -24.51332 -22.68584 -22.38284 -21.53848 -21.06807 -19.95128 -19.76006 -18.63263 -17.76739 -17.50172 -17.01461 -16.87638 -16.74435 -16.40759 -16.28241 -16.21335 -15.72029 -15.66704 -15.47593 -15.10714 -14.67516 -14.52631 -14.35418 -14.02693 -13.73701 -13.61574 -13.45277 -13.28441 -13.25073 -13.12463 -12.93378 -12.79625 -12.60192 -12.43070 -12.38858 -12.27592 -12.16749 -12.06397 -11.76038 -11.71112 -11.49172 -11.44871 -10.94486 -10.42436 -10.20668 -10.01307 -9.83991 -9.29404 -8.47454 -5.95872 1.37170 1.41367 1.46529 1.53603 1.83446 2.03462 2.27825 2.84697 2.99922 3.19745 3.27392 3.38362 3.51845 3.66092 3.70002 3.75762 3.98262 4.02546 4.12171 4.20134 4.24390 4.31683 4.35648 4.37644 4.45057 4.47356 4.51232 4.55389 4.61682 4.64163 4.67182 4.78159 4.83113 4.84783 4.86026 4.97319 5.07916 5.10337 5.15312 5.24027 5.28023 5.36492 5.41265 5.82853 5.92568 6.08774 6.28559 6.29815 6.59405 7.03805 7.12235 7.54959 8.10259 8.69897 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.028488 B = 0.002136 C = 0.002102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.618521 B =13107.432190 C =13319.458163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.602 5.602 3 C 0.518 3.482 4 O -0.581 6.581 5 C -0.106 4.106 6 C -0.144 4.144 7 C 0.061 3.939 8 O -0.404 6.404 9 C 0.063 3.937 10 C -0.135 4.135 11 C 0.129 3.871 12 H 0.136 0.864 13 C -0.127 4.127 14 C 0.036 3.964 15 N -0.502 5.502 16 C 0.048 3.952 17 C 0.440 3.560 18 O -0.611 6.611 19 N -0.574 5.574 20 C -0.330 4.330 21 H 0.081 0.919 22 C -0.014 4.014 23 N -0.921 5.921 24 Si 0.992 3.008 25 H -0.271 1.271 26 H -0.273 1.273 27 H -0.272 1.272 28 C 0.023 3.977 29 H 0.054 0.946 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.121 0.879 33 H 0.060 0.940 34 H 0.098 0.902 35 H 0.075 0.925 36 H 0.109 0.891 37 H 0.072 0.928 38 H 0.105 0.895 39 H 0.078 0.922 40 H 0.058 0.942 41 H 0.080 0.920 42 H 0.101 0.899 43 H 0.028 0.972 44 H 0.080 0.920 45 H 0.110 0.890 46 H 0.063 0.937 47 H 0.395 0.605 48 H 0.277 0.723 49 H 0.111 0.889 50 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.898 16.280 -2.149 24.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.334 5.334 3 C 0.308 3.692 4 O -0.460 6.460 5 C -0.127 4.127 6 C -0.182 4.182 7 C -0.016 4.016 8 O -0.324 6.324 9 C -0.014 4.014 10 C -0.174 4.174 11 C 0.026 3.974 12 H 0.154 0.846 13 C -0.166 4.166 14 C -0.092 4.092 15 N -0.227 5.227 16 C -0.083 4.083 17 C 0.228 3.772 18 O -0.497 6.497 19 N -0.211 5.211 20 C -0.459 4.459 21 H 0.099 0.901 22 C -0.214 4.214 23 N -0.562 5.562 24 Si 0.816 3.184 25 H -0.196 1.196 26 H -0.198 1.198 27 H -0.197 1.197 28 C -0.106 4.106 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.139 0.861 33 H 0.078 0.922 34 H 0.116 0.884 35 H 0.093 0.907 36 H 0.127 0.873 37 H 0.090 0.910 38 H 0.123 0.877 39 H 0.096 0.904 40 H 0.077 0.923 41 H 0.099 0.901 42 H 0.119 0.881 43 H 0.046 0.954 44 H 0.098 0.902 45 H 0.128 0.872 46 H 0.081 0.919 47 H 0.229 0.771 48 H 0.086 0.914 49 H 0.129 0.871 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 18.170 16.236 -2.590 24.505 hybrid contribution -2.300 -0.241 0.149 2.318 sum 15.870 15.995 -2.441 22.664 Atomic orbital electron populations 1.21699 0.80005 1.02993 1.01873 1.48061 1.06725 1.06112 1.72480 1.21149 0.91020 0.82471 0.74557 1.90675 1.71378 1.32657 1.51335 1.21463 0.89512 1.00941 1.00817 1.22247 0.97624 1.03700 0.94674 1.22741 0.92397 0.84773 1.01666 1.87933 1.74329 1.35379 1.34722 1.22695 0.91251 1.02710 0.84702 1.22019 0.97434 0.95487 1.02415 1.22288 0.98192 0.82043 0.94925 0.84612 1.22932 0.99762 0.97025 0.96871 1.23436 0.95938 0.98875 0.90914 1.64707 1.28878 1.26924 1.02183 1.21986 0.92994 0.95600 0.97745 1.20680 0.82361 0.86660 0.87545 1.90441 1.66711 1.68952 1.23641 1.41938 1.27429 1.31560 1.20152 1.19645 1.11507 1.11458 1.03305 0.90129 1.26038 0.97288 1.01127 0.96945 1.69675 1.26530 1.43142 1.16865 0.84939 0.77445 0.77847 0.78197 1.19639 1.19758 1.19696 1.23418 1.01362 0.88799 0.96999 0.92727 0.91222 0.90861 0.86148 0.92152 0.88357 0.90723 0.87266 0.91008 0.87720 0.90373 0.92339 0.90145 0.88096 0.95431 0.90206 0.87194 0.91915 0.77127 0.91360 0.87133 0.93019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.72 9.43 127.77 1.20 2.92 16 2 N -0.60 -11.92 2.75 -817.68 -2.25 -14.16 16 3 C 0.52 11.19 6.85 87.66 0.60 11.79 16 4 O -0.58 -17.46 15.51 -3.03 -0.05 -17.51 16 5 C -0.11 -1.52 1.73 -11.42 -0.02 -1.54 16 6 C -0.14 -1.75 5.12 30.69 0.16 -1.59 16 7 C 0.06 0.62 6.84 72.02 0.49 1.11 16 8 O -0.40 -6.23 10.77 -148.98 -1.60 -7.84 16 9 C 0.06 0.74 6.84 72.01 0.49 1.23 16 10 C -0.14 -2.07 4.95 30.69 0.15 -1.92 16 11 C 0.13 2.13 2.75 45.87 0.13 2.25 16 12 H 0.14 1.44 4.55 -2.39 -0.01 1.43 16 13 C -0.13 -2.52 6.24 31.80 0.20 -2.32 16 14 C 0.04 1.06 4.94 86.60 0.43 1.49 16 15 N -0.50 -14.38 5.26 -886.80 -4.67 -19.05 16 16 C 0.05 1.58 5.52 85.56 0.47 2.05 16 17 C 0.44 20.02 7.50 87.66 0.66 20.67 16 18 O -0.61 -31.71 13.12 -3.05 -0.04 -31.75 16 19 N -0.57 -28.69 5.29 -306.98 -1.62 -30.32 16 20 C -0.33 -18.30 9.68 84.04 0.81 -17.48 16 21 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 22 C -0.01 -0.75 5.50 84.92 0.47 -0.29 16 23 N -0.92 -49.23 13.05 21.66 0.28 -48.95 16 24 Si 0.99 42.36 29.55 68.60 2.03 44.39 16 25 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 26 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 27 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 28 C 0.02 0.44 6.17 86.45 0.53 0.98 16 29 H 0.05 1.21 7.58 -2.39 -0.02 1.19 16 30 H 0.07 1.68 7.33 -2.39 -0.02 1.66 16 31 H 0.07 1.67 5.11 -2.39 -0.01 1.66 16 32 H 0.12 1.15 6.96 -2.39 -0.02 1.13 16 33 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.10 0.87 6.56 -2.39 -0.02 0.86 16 35 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 36 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 38 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.06 1.20 7.80 -2.38 -0.02 1.18 16 41 H 0.08 1.53 8.05 -2.38 -0.02 1.51 16 42 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 43 H 0.03 0.87 5.90 -2.39 -0.01 0.85 16 44 H 0.08 3.05 6.01 -2.39 -0.01 3.04 16 45 H 0.11 3.20 8.14 -2.39 -0.02 3.18 16 46 H 0.06 1.88 7.81 -2.38 -0.02 1.86 16 47 H 0.40 18.92 7.90 -92.71 -0.73 18.19 16 48 H 0.28 13.90 8.31 -92.71 -0.77 13.13 16 49 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 50 H 0.05 1.07 6.25 -2.39 -0.01 1.05 16 Total: -1.00 -71.67 383.23 -0.91 -72.58 By element: Atomic # 1 Polarization: 33.01 SS G_CDS: 0.23 Total: 33.24 kcal Atomic # 6 Polarization: 12.58 SS G_CDS: 6.77 Total: 19.36 kcal Atomic # 7 Polarization: -104.22 SS G_CDS: -8.26 Total: -112.47 kcal Atomic # 8 Polarization: -55.40 SS G_CDS: -1.69 Total: -57.10 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.39 kcal Total: -71.67 -0.91 -72.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567901875.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.363 kcal (2) G-P(sol) polarization free energy of solvation -71.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds