Wall clock time and date at job start Sat Apr 11 2020 05:48:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50696 * 120.00445 * 2 1 4 4 C 1.52991 * 109.47416 * 124.99580 * 3 2 1 5 5 O 1.42908 * 109.47132 * 179.97438 * 4 3 2 6 6 C 1.42899 * 113.99829 * 180.02562 * 5 4 3 7 7 C 1.50700 * 109.46831 * 180.02562 * 6 5 4 8 8 O 1.21287 * 119.99909 * 359.97438 * 7 6 5 9 9 N 1.34779 * 120.00090 * 180.02562 * 7 6 5 10 10 C 1.46504 * 119.99582 * 359.97438 * 9 7 6 11 11 C 1.46504 * 120.00031 * 179.97438 * 9 7 6 12 12 H 1.09000 * 110.27419 * 2.08714 * 11 9 7 13 13 C 1.54591 * 110.30625 * 124.28041 * 11 9 7 14 14 C 1.54940 * 102.91912 * 140.87135 * 13 11 9 15 15 N 1.48527 * 103.22612 * 322.58612 * 14 13 11 16 16 C 1.46902 * 110.99964 * 159.71987 * 15 14 13 17 17 C 1.50702 * 109.47027 * 52.60122 * 16 15 14 18 18 O 1.21293 * 120.00255 * 0.02562 * 17 16 15 19 19 N 1.34777 * 119.99928 * 179.72353 * 17 16 15 20 20 C 1.37101 * 120.00327 * 180.27606 * 19 17 16 21 21 H 1.08001 * 119.99426 * 0.02562 * 20 19 17 22 22 C 1.38942 * 120.00412 * 180.02562 * 20 19 17 23 23 N 1.31414 * 120.00005 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00057 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.46867 * 90.00263 * 24 22 20 26 26 H 1.48501 * 109.47216 * 210.00120 * 24 22 20 27 27 H 1.48499 * 109.47135 * 330.00462 * 24 22 20 28 28 C 1.47895 * 105.82449 * 39.20715 * 15 14 13 29 29 H 1.07996 * 120.00009 * 180.02562 * 1 2 3 30 30 H 1.08004 * 119.99813 * 0.02562 * 1 2 3 31 31 H 1.08000 * 119.99579 * 179.97438 * 2 1 3 32 32 H 1.08998 * 109.46932 * 4.99426 * 3 2 1 33 33 H 1.09001 * 109.46933 * 245.00101 * 3 2 1 34 34 H 1.08998 * 109.47196 * 60.00007 * 4 3 2 35 35 H 1.09000 * 109.47203 * 299.99720 * 4 3 2 36 36 H 1.08995 * 109.47620 * 60.00111 * 6 5 4 37 37 H 1.09002 * 109.47161 * 299.99472 * 6 5 4 38 38 H 1.08999 * 109.46689 * 269.99789 * 10 9 7 39 39 H 1.08998 * 109.47267 * 30.00525 * 10 9 7 40 40 H 1.08997 * 109.46381 * 150.00501 * 10 9 7 41 41 H 1.09001 * 110.72628 * 259.22892 * 13 11 9 42 42 H 1.09001 * 110.72432 * 22.34093 * 13 11 9 43 43 H 1.09004 * 110.66630 * 204.15153 * 14 13 11 44 44 H 1.09002 * 110.66469 * 81.02363 * 14 13 11 45 45 H 1.09004 * 109.47131 * 292.60366 * 16 15 14 46 46 H 1.09000 * 109.47732 * 172.60477 * 16 15 14 47 47 H 0.97000 * 120.00317 * 0.28382 * 19 17 16 48 48 H 0.96996 * 120.00330 * 179.97438 * 23 22 20 49 49 H 1.09003 * 109.92105 * 94.01940 * 28 15 14 50 50 H 1.08995 * 109.92441 * 215.31482 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0350 1.3330 1.1816 5 8 3.7501 2.5704 1.1812 6 6 4.6895 2.6991 2.2502 7 6 5.3816 4.0342 2.1527 8 8 5.0985 4.7999 1.2557 9 7 6.3159 4.3770 3.0616 10 6 6.6582 3.4518 4.1448 11 6 6.9891 5.6747 2.9665 12 1 6.5894 6.2470 2.1293 13 6 6.8234 6.4631 4.2859 14 6 8.2086 7.1337 4.4650 15 7 9.1540 6.0950 3.9819 16 6 10.4488 6.6882 3.6220 17 6 10.9612 7.5132 4.7744 18 8 10.3118 7.5982 5.7954 19 7 12.1438 8.1515 4.6729 20 6 12.6126 8.8974 5.7234 21 1 12.0344 8.9731 6.6324 22 6 13.8316 9.5560 5.6186 23 7 14.5349 9.4643 4.5123 24 14 14.4699 10.5728 7.0497 25 1 15.2925 9.7140 7.9390 26 1 15.3014 11.6889 6.5319 27 1 13.3233 11.1238 7.8158 28 6 8.5077 5.4783 2.8033 29 1 -0.5400 -0.9353 0.0004 30 1 -0.5400 0.9354 -0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3587 2.1316 0.0895 33 1 2.6214 1.4024 -0.9314 34 1 3.7399 0.5065 1.0921 35 1 2.4772 1.2357 2.1130 36 1 5.4284 1.9006 2.1828 37 1 4.1663 2.6303 3.2040 38 1 6.0146 3.6436 5.0033 39 1 6.5151 2.4260 3.8052 40 1 7.6996 3.5977 4.4316 41 1 6.0402 7.2152 4.1901 42 1 6.6087 5.7879 5.1143 43 1 8.3922 7.3627 5.5148 44 1 8.2818 8.0342 3.8552 45 1 10.3258 7.3249 2.7458 46 1 11.1621 5.8952 3.3974 47 1 12.6633 8.0834 3.8566 48 1 15.3857 9.9243 4.4390 49 1 8.8499 5.9697 1.8924 50 1 8.7425 4.4146 2.7650 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567928385.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:55 Heat of formation + Delta-G solvation = -76.737987 kcal Electronic energy + Delta-G solvation = -28903.929120 eV Core-core repulsion = 24739.524820 eV Total energy + Delta-G solvation = -4164.404300 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.47850 -39.10471 -38.20443 -37.36933 -35.40686 -35.24141 -33.91204 -31.69565 -31.15294 -30.23116 -28.81442 -27.61908 -27.22903 -25.99360 -24.16890 -23.43877 -21.27669 -21.17873 -20.26866 -19.27979 -19.16265 -17.92534 -17.69680 -16.97286 -16.80142 -16.39368 -15.90218 -15.75899 -15.32930 -15.20658 -14.78446 -14.50420 -14.37312 -13.94382 -13.85103 -13.79470 -13.49680 -13.17203 -13.03365 -12.74225 -12.54335 -12.39226 -12.23717 -11.97321 -11.78340 -11.70298 -11.62343 -11.55687 -11.54472 -11.40808 -11.08677 -10.97127 -10.56255 -10.38756 -10.24298 -10.11359 -9.90228 -9.81980 -9.51257 -8.86521 -8.38934 -8.04468 -7.92784 -6.44221 -3.85278 1.74360 2.38031 2.45270 3.16069 3.25158 3.30606 3.46649 3.86523 4.05868 4.22770 4.29759 4.47225 4.58728 4.63194 4.66160 4.71280 4.80742 4.82097 4.87161 4.93445 4.96819 5.06737 5.17847 5.24257 5.31402 5.36049 5.42559 5.43916 5.49269 5.56903 5.58734 5.73465 5.78732 5.85677 5.94299 5.99503 6.13385 6.22957 6.25385 6.25814 6.36570 6.62191 6.68589 7.12290 7.20061 7.26273 7.52876 7.96841 8.03190 8.58548 9.15165 9.50927 10.02258 10.73377 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.049245 B = 0.001534 C = 0.001523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.447682 B =18244.307981 C =18376.279672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.155 4.155 3 C -0.094 4.094 4 C 0.065 3.935 5 O -0.365 6.365 6 C 0.048 3.952 7 C 0.514 3.486 8 O -0.522 6.522 9 N -0.604 5.604 10 C 0.070 3.930 11 C 0.132 3.868 12 H 0.105 0.895 13 C -0.135 4.135 14 C 0.039 3.961 15 N -0.494 5.494 16 C 0.036 3.964 17 C 0.442 3.558 18 O -0.582 6.582 19 N -0.561 5.561 20 C -0.300 4.300 21 H 0.104 0.896 22 C 0.023 3.977 23 N -0.901 5.901 24 Si 0.930 3.070 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.270 1.270 28 C 0.023 3.977 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.111 0.889 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.052 0.948 35 H 0.052 0.948 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.059 0.941 39 H 0.067 0.933 40 H 0.090 0.910 41 H 0.072 0.928 42 H 0.079 0.921 43 H 0.122 0.878 44 H 0.038 0.962 45 H 0.050 0.950 46 H 0.090 0.910 47 H 0.392 0.608 48 H 0.272 0.728 49 H 0.051 0.949 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.855 -18.343 -6.757 28.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.173 4.173 3 C -0.131 4.131 4 C -0.011 4.011 5 O -0.283 6.283 6 C -0.032 4.032 7 C 0.301 3.699 8 O -0.397 6.397 9 N -0.338 5.338 10 C -0.073 4.073 11 C 0.028 3.972 12 H 0.123 0.877 13 C -0.174 4.174 14 C -0.088 4.088 15 N -0.218 5.218 16 C -0.096 4.096 17 C 0.227 3.773 18 O -0.466 6.466 19 N -0.197 5.197 20 C -0.430 4.430 21 H 0.121 0.879 22 C -0.178 4.178 23 N -0.542 5.542 24 Si 0.757 3.243 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.194 1.194 28 C -0.106 4.106 29 H 0.117 0.883 30 H 0.116 0.884 31 H 0.129 0.871 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.078 0.922 39 H 0.086 0.914 40 H 0.109 0.891 41 H 0.091 0.909 42 H 0.098 0.902 43 H 0.140 0.860 44 H 0.057 0.943 45 H 0.068 0.932 46 H 0.108 0.892 47 H 0.226 0.774 48 H 0.082 0.918 49 H 0.069 0.931 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -21.168 -18.023 -6.351 28.517 hybrid contribution 0.815 0.700 -0.295 1.114 sum -20.353 -17.323 -6.646 27.540 Atomic orbital electron populations 1.23928 0.95903 1.02132 1.00413 1.22797 0.96023 0.97941 1.00530 1.20639 0.97943 0.95970 0.98530 1.22499 0.94006 0.85995 0.98647 1.87997 1.54308 1.37543 1.48501 1.22234 0.93038 0.95968 0.91946 1.20242 0.79671 0.88199 0.81810 1.90724 1.63119 1.52384 1.33481 1.47836 1.39308 1.18337 1.28364 1.21889 1.03513 0.92114 0.89738 1.22030 0.91834 0.83377 0.99948 0.87663 1.22951 0.98444 0.99345 0.96613 1.23474 0.88490 0.92188 1.04646 1.64633 1.01965 1.28621 1.26596 1.22108 0.92528 0.98144 0.96809 1.19690 0.83640 0.84603 0.89319 1.90430 1.57971 1.66595 1.31651 1.41852 1.17562 1.43382 1.16881 1.19703 1.03049 1.24430 0.95796 0.87861 1.25264 0.96287 0.98276 0.98013 1.69611 1.14521 1.43887 1.26157 0.85858 0.78835 0.79050 0.80544 1.20378 1.20928 1.19411 1.23302 0.92820 1.01210 0.93282 0.88258 0.88358 0.87140 0.90446 0.89879 0.92954 0.92970 0.90179 0.90219 0.92214 0.91406 0.89088 0.90925 0.90245 0.86039 0.94316 0.93221 0.89205 0.77438 0.91828 0.93080 0.89981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -0.96 14.32 29.01 0.42 -0.55 16 2 C -0.15 -0.85 9.52 -36.03 -0.34 -1.19 16 3 C -0.09 -0.64 6.03 -27.89 -0.17 -0.81 16 4 C 0.07 0.46 5.92 37.15 0.22 0.68 16 5 O -0.37 -3.93 9.88 -55.14 -0.54 -4.47 16 6 C 0.05 0.41 4.97 36.01 0.18 0.59 16 7 C 0.51 6.28 7.75 -10.98 -0.09 6.19 16 8 O -0.52 -8.70 15.86 -14.36 -0.23 -8.93 16 9 N -0.60 -6.53 2.77 -172.37 -0.48 -7.01 16 10 C 0.07 0.54 8.84 59.85 0.53 1.07 16 11 C 0.13 1.66 3.39 -66.57 -0.23 1.44 16 12 H 0.11 1.48 6.97 -51.93 -0.36 1.12 16 13 C -0.13 -1.73 6.65 -24.87 -0.17 -1.90 16 14 C 0.04 0.64 5.30 -1.90 -0.01 0.63 16 15 N -0.49 -7.94 5.26 -231.89 -1.22 -9.16 16 16 C 0.04 0.63 5.52 -4.97 -0.03 0.60 16 17 C 0.44 10.15 7.49 -10.98 -0.08 10.07 16 18 O -0.58 -14.93 13.10 5.55 0.07 -14.85 16 19 N -0.56 -13.98 5.29 -10.96 -0.06 -14.04 16 20 C -0.30 -8.24 9.68 -14.93 -0.14 -8.38 16 21 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 22 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 23 N -0.90 -24.29 13.05 55.50 0.72 -23.57 16 24 Si 0.93 20.81 29.55 -169.99 -5.02 15.79 16 25 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 26 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 27 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 28 C 0.02 0.30 5.86 -2.76 -0.02 0.29 16 29 H 0.10 0.40 8.06 -52.49 -0.42 -0.03 16 30 H 0.10 0.49 7.84 -52.48 -0.41 0.08 16 31 H 0.11 0.48 8.06 -52.49 -0.42 0.06 16 32 H 0.08 0.57 7.79 -51.93 -0.40 0.17 16 33 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.08 0.49 7.40 -51.93 -0.38 0.11 16 37 H 0.08 0.50 8.11 -51.93 -0.42 0.08 16 38 H 0.06 0.41 7.87 -51.93 -0.41 0.00 16 39 H 0.07 0.35 6.44 -51.93 -0.33 0.01 16 40 H 0.09 0.82 6.97 -51.93 -0.36 0.46 16 41 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.08 0.97 6.84 -51.93 -0.36 0.61 16 43 H 0.12 2.36 5.97 -51.93 -0.31 2.05 16 44 H 0.04 0.65 8.02 -51.93 -0.42 0.24 16 45 H 0.05 0.82 7.81 -51.93 -0.41 0.41 16 46 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 47 H 0.39 9.42 7.90 -40.82 -0.32 9.09 16 48 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 49 H 0.05 0.67 7.57 -51.93 -0.39 0.27 16 50 H 0.08 1.00 7.11 -51.93 -0.37 0.63 16 LS Contribution 405.70 15.07 6.11 6.11 Total: -1.00 -33.29 405.70 -8.79 -42.08 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: -8.13 Total: 8.79 kcal Atomic # 6 Polarization: 9.27 SS G_CDS: -0.02 Total: 9.25 kcal Atomic # 7 Polarization: -52.74 SS G_CDS: -1.03 Total: -53.77 kcal Atomic # 8 Polarization: -27.55 SS G_CDS: -0.70 Total: -28.25 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -33.29 -8.79 -42.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567928385.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.654 kcal (2) G-P(sol) polarization free energy of solvation -33.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds