Wall clock time and date at job start Sat Apr 11 2020 05:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46500 * 120.00026 * 2 1 4 4 C 1.52997 * 109.47037 * 90.00427 * 3 2 1 5 5 C 1.53000 * 109.47013 * 180.02562 * 4 3 2 6 6 N 1.46897 * 109.47189 * 179.97438 * 5 4 3 7 7 C 1.46903 * 111.00153 * 179.97438 * 6 5 4 8 8 C 1.50698 * 109.47147 * 179.97438 * 7 6 5 9 9 O 1.21292 * 120.00321 * 0.02562 * 8 7 6 10 10 N 1.34776 * 120.00226 * 179.97438 * 8 7 6 11 11 C 1.37097 * 120.00379 * 180.02562 * 10 8 7 12 12 H 1.07997 * 119.99974 * 359.97438 * 11 10 8 13 13 C 1.38950 * 120.00140 * 179.97438 * 11 10 8 14 14 N 1.31415 * 119.99684 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00193 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46770 * 0.02562 * 15 13 11 17 17 H 1.48497 * 109.47211 * 120.00086 * 15 13 11 18 18 H 1.48498 * 109.47018 * 240.00408 * 15 13 11 19 19 C 1.34779 * 119.99711 * 179.97438 * 2 1 3 20 20 O 1.21281 * 119.99788 * 179.97438 * 19 2 1 21 21 C 1.50694 * 120.00238 * 0.02562 * 19 2 1 22 22 H 1.09000 * 115.56518 * 27.06882 * 21 19 2 23 23 C 1.53181 * 117.52240 * 172.83627 * 21 19 2 24 24 C 1.52129 * 117.52275 * 241.21046 * 21 19 2 25 25 C 1.54037 * 121.47378 * 141.71110 * 24 21 19 26 26 C 1.55179 * 101.83118 * 195.70826 * 25 24 21 27 27 O 1.44454 * 103.63518 * 36.32877 * 26 25 24 28 28 C 1.43991 * 107.04768 * 320.43326 * 27 26 25 29 29 H 1.08997 * 109.46941 * 89.99960 * 1 2 3 30 30 H 1.08995 * 109.47124 * 209.99905 * 1 2 3 31 31 H 1.08998 * 109.46893 * 330.00171 * 1 2 3 32 32 H 1.08991 * 109.47292 * 329.99799 * 3 2 1 33 33 H 1.09004 * 109.46780 * 210.00279 * 3 2 1 34 34 H 1.08997 * 109.47497 * 59.99998 * 4 3 2 35 35 H 1.09001 * 109.46731 * 299.99712 * 4 3 2 36 36 H 1.09005 * 109.47335 * 59.99505 * 5 4 3 37 37 H 1.09001 * 109.47075 * 299.99426 * 5 4 3 38 38 H 1.00905 * 110.99973 * 303.94822 * 6 5 4 39 39 H 1.08992 * 109.47033 * 299.99608 * 7 6 5 40 40 H 1.08998 * 109.47120 * 59.99947 * 7 6 5 41 41 H 0.97008 * 119.99662 * 0.02562 * 10 8 7 42 42 H 0.97008 * 119.99744 * 179.97438 * 14 13 11 43 43 H 1.08994 * 117.52430 * 214.84689 * 23 21 19 44 44 H 1.08997 * 117.52195 * 359.95195 * 23 21 19 45 45 H 1.08994 * 110.95851 * 313.84608 * 25 24 21 46 46 H 1.09007 * 110.95605 * 77.57527 * 25 24 21 47 47 H 1.09005 * 110.59086 * 277.79741 * 26 25 24 48 48 H 1.09000 * 110.72400 * 154.93489 * 26 25 24 49 49 H 1.08992 * 109.97329 * 266.93756 * 28 27 26 50 50 H 1.09007 * 109.97220 * 145.65946 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7103 1.4425 5 6 3.2170 3.0356 1.4425 6 7 3.4614 3.4600 2.8274 7 6 4.1957 4.7317 2.8666 8 6 4.4268 5.1344 4.3003 9 8 4.0203 4.4309 5.2009 10 7 5.0860 6.2756 4.5819 11 6 5.2968 6.6417 5.8862 12 1 4.9341 6.0157 6.6881 13 6 5.9769 7.8181 6.1765 14 7 6.4178 8.5800 5.2007 15 14 6.2634 8.3172 7.9536 16 1 5.6725 7.2964 8.8558 17 1 7.7225 8.4187 8.2102 18 1 5.6234 9.6329 8.2075 19 6 2.1388 -1.1673 0.0005 20 8 3.3516 -1.1673 0.0001 21 6 1.3853 -2.4723 0.0005 22 1 0.3920 -2.4420 -0.4473 23 6 2.1987 -3.7593 -0.1683 24 6 1.5961 -3.4057 1.1832 25 6 0.4337 -4.2196 1.7824 26 6 1.0235 -4.6578 3.1492 27 8 1.8128 -3.5199 3.5600 28 6 2.4676 -3.0129 2.3821 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6085 2.0283 -0.5138 33 1 3.1499 1.1383 -0.5139 34 1 3.0417 0.9507 1.9563 35 1 1.5001 1.8407 1.9563 36 1 2.6276 3.7951 0.9287 37 1 4.1694 2.9057 0.9285 38 1 2.5968 3.5253 3.3435 39 1 5.1550 4.6131 2.3631 40 1 3.6135 5.5031 2.3623 41 1 5.4115 6.8381 3.8616 42 1 6.8923 9.4015 5.4034 43 1 1.7400 -4.5755 -0.7262 44 1 3.2786 -3.6616 -0.2801 45 1 -0.4489 -3.5952 1.9208 46 1 0.2033 -5.0855 1.1616 47 1 1.6542 -5.5388 3.0298 48 1 0.2277 -4.8521 3.8683 49 1 3.4572 -3.4593 2.2850 50 1 2.5523 -1.9278 2.4411 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569255538.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:59 Heat of formation + Delta-G solvation = -87.728349 kcal Electronic energy + Delta-G solvation = -28980.134756 eV Core-core repulsion = 24815.253878 eV Total energy + Delta-G solvation = -4164.880878 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.02949 -39.38807 -38.26714 -36.85977 -35.98385 -35.41763 -33.84510 -31.92087 -31.14314 -30.72727 -27.99978 -27.63853 -26.83444 -25.47775 -24.00430 -23.22038 -22.70918 -21.46923 -20.36388 -19.18915 -18.97637 -17.84474 -17.65904 -16.90917 -16.52306 -16.24329 -15.87841 -15.64747 -15.53176 -15.26077 -14.66356 -14.50614 -14.27896 -14.13677 -13.90203 -13.56123 -13.40921 -13.34799 -13.27579 -12.98701 -12.81366 -12.63021 -12.35838 -12.06990 -11.92909 -11.84692 -11.68146 -11.45192 -11.42730 -11.33778 -11.03712 -10.87541 -10.74423 -10.55187 -10.31462 -10.19218 -10.02101 -9.94635 -9.48667 -9.00002 -8.41578 -8.00437 -7.91946 -6.38503 -3.79067 2.07356 2.57985 3.19013 3.29251 3.30463 3.37058 3.55358 3.77083 3.94957 4.07955 4.14839 4.23874 4.37375 4.38282 4.47990 4.71139 4.73487 4.81247 4.91758 4.95561 4.96465 5.10173 5.17413 5.22687 5.26210 5.27673 5.28287 5.29511 5.36143 5.37019 5.42052 5.46141 5.49528 5.55192 5.64332 5.69356 5.83071 6.02608 6.06491 6.10473 6.29461 6.34054 6.49754 7.01758 7.27826 7.58778 7.71862 7.86373 8.10366 8.65147 9.21542 9.58147 10.09885 10.79403 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016524 B = 0.001790 C = 0.001671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.134266 B =15641.506425 C =16747.498323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.612 5.612 3 C 0.117 3.883 4 C -0.131 4.131 5 C 0.064 3.936 6 N -0.669 5.669 7 C 0.051 3.949 8 C 0.441 3.559 9 O -0.582 6.582 10 N -0.565 5.565 11 C -0.298 4.298 12 H 0.103 0.897 13 C 0.021 3.979 14 N -0.902 5.902 15 Si 0.930 3.070 16 H -0.268 1.268 17 H -0.281 1.281 18 H -0.282 1.282 19 C 0.542 3.458 20 O -0.530 6.530 21 C -0.175 4.175 22 H 0.126 0.874 23 C -0.127 4.127 24 C -0.134 4.134 25 C -0.120 4.120 26 C 0.048 3.952 27 O -0.373 6.373 28 C 0.085 3.915 29 H 0.057 0.943 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.077 0.923 35 H 0.062 0.938 36 H 0.026 0.974 37 H 0.072 0.928 38 H 0.348 0.652 39 H 0.086 0.914 40 H 0.043 0.957 41 H 0.392 0.608 42 H 0.270 0.730 43 H 0.107 0.893 44 H 0.113 0.887 45 H 0.084 0.916 46 H 0.085 0.915 47 H 0.063 0.937 48 H 0.095 0.905 49 H 0.070 0.930 50 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.461 -23.409 -16.750 32.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.345 5.345 3 C -0.006 4.006 4 C -0.170 4.170 5 C -0.067 4.067 6 N -0.302 5.302 7 C -0.082 4.082 8 C 0.227 3.773 9 O -0.466 6.466 10 N -0.202 5.202 11 C -0.427 4.427 12 H 0.121 0.879 13 C -0.181 4.181 14 N -0.544 5.544 15 Si 0.757 3.243 16 H -0.192 1.192 17 H -0.207 1.207 18 H -0.208 1.208 19 C 0.330 3.670 20 O -0.407 6.407 21 C -0.196 4.196 22 H 0.144 0.856 23 C -0.164 4.164 24 C -0.135 4.135 25 C -0.158 4.158 26 C -0.029 4.029 27 O -0.291 6.291 28 C 0.008 3.992 29 H 0.075 0.925 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.105 0.895 34 H 0.095 0.905 35 H 0.081 0.919 36 H 0.044 0.956 37 H 0.091 0.909 38 H 0.167 0.833 39 H 0.104 0.896 40 H 0.061 0.939 41 H 0.225 0.775 42 H 0.080 0.920 43 H 0.125 0.875 44 H 0.131 0.869 45 H 0.102 0.898 46 H 0.103 0.897 47 H 0.081 0.919 48 H 0.113 0.887 49 H 0.088 0.912 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -14.401 -23.978 -15.838 32.143 hybrid contribution -0.508 1.429 -0.217 1.532 sum -14.909 -22.549 -16.055 31.441 Atomic orbital electron populations 1.21839 0.79375 1.03642 1.01780 1.47745 1.07103 1.06001 1.73670 1.21486 0.97796 0.83828 0.97476 1.21887 1.00754 0.98090 0.96282 1.21850 0.99543 0.94876 0.90384 1.60019 1.27393 1.30973 1.11773 1.21668 0.99402 0.90305 0.96778 1.19834 0.84334 0.83392 0.89787 1.90525 1.54966 1.53570 1.47578 1.41874 1.49645 1.19879 1.08783 1.19762 1.33407 1.05535 0.84020 0.87870 1.25270 0.96950 0.96091 0.99769 1.69628 1.38639 1.14298 1.31838 0.85793 0.77987 0.78431 0.82093 1.19208 1.20749 1.20806 1.19596 0.87363 0.84277 0.75802 1.90732 1.13612 1.87107 1.49204 1.22301 1.01965 0.90335 1.05035 0.85633 1.23038 1.01026 0.95580 0.96740 1.22224 0.99818 1.00705 0.90780 1.22670 0.96753 0.99492 0.96860 1.23557 0.94618 0.89655 0.95062 1.88999 1.64189 1.45790 1.30159 1.22540 0.94630 1.00145 0.81895 0.92478 0.90874 0.90620 0.90454 0.89531 0.90454 0.91927 0.95611 0.90921 0.83268 0.89572 0.93937 0.77462 0.91968 0.87450 0.86873 0.89791 0.89684 0.91918 0.88696 0.91212 0.89375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.41 9.98 59.85 0.60 1.01 16 2 N -0.61 -5.44 2.87 -181.58 -0.52 -5.96 16 3 C 0.12 1.11 5.41 -4.04 -0.02 1.09 16 4 C -0.13 -1.52 5.80 -26.73 -0.16 -1.67 16 5 C 0.06 0.82 5.68 -3.83 -0.02 0.80 16 6 N -0.67 -11.53 6.13 -115.06 -0.70 -12.23 16 7 C 0.05 0.95 6.17 -4.98 -0.03 0.92 16 8 C 0.44 10.84 7.82 -10.99 -0.09 10.75 16 9 O -0.58 -16.45 15.78 5.55 0.09 -16.36 16 10 N -0.56 -14.76 5.29 -10.97 -0.06 -14.81 16 11 C -0.30 -8.52 9.68 -14.93 -0.14 -8.66 16 12 H 0.10 3.10 7.16 -52.49 -0.38 2.73 16 13 C 0.02 0.56 5.50 -17.47 -0.10 0.47 16 14 N -0.90 -25.01 13.05 55.50 0.72 -24.28 16 15 Si 0.93 21.48 29.55 -169.99 -5.02 16.46 16 16 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 17 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 18 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 19 C 0.54 5.72 6.31 -10.99 -0.07 5.65 16 20 O -0.53 -7.56 15.67 5.56 0.09 -7.47 16 21 C -0.18 -1.30 4.90 -92.12 -0.45 -1.75 16 22 H 0.13 0.62 6.91 -51.93 -0.36 0.26 16 23 C -0.13 -0.86 9.81 -27.08 -0.27 -1.13 16 24 C -0.13 -1.03 2.43 -154.67 -0.38 -1.41 16 25 C -0.12 -0.67 6.94 -25.04 -0.17 -0.84 16 26 C 0.05 0.34 7.73 38.31 0.30 0.63 16 27 O -0.37 -4.27 11.53 -35.23 -0.41 -4.68 16 28 C 0.08 0.90 7.05 37.33 0.26 1.17 16 29 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.07 0.33 6.51 -51.93 -0.34 -0.01 16 31 H 0.08 0.37 8.07 -51.93 -0.42 -0.05 16 32 H 0.08 0.56 8.07 -51.93 -0.42 0.15 16 33 H 0.09 0.94 7.42 -51.93 -0.39 0.55 16 34 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.35 6.10 8.43 -39.29 -0.33 5.77 16 39 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 40 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.39 9.75 7.90 -40.82 -0.32 9.43 16 42 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 43 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.11 0.95 7.69 -51.93 -0.40 0.55 16 45 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 46 H 0.08 0.31 8.13 -51.92 -0.42 -0.12 16 47 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 50 H 0.09 1.11 7.22 -51.93 -0.37 0.74 16 LS Contribution 411.91 15.07 6.21 6.21 Total: -1.00 -35.53 411.91 -8.70 -44.23 By element: Atomic # 1 Polarization: 20.25 SS G_CDS: -8.35 Total: 11.89 kcal Atomic # 6 Polarization: 7.75 SS G_CDS: -0.74 Total: 7.02 kcal Atomic # 7 Polarization: -56.73 SS G_CDS: -0.56 Total: -57.29 kcal Atomic # 8 Polarization: -28.29 SS G_CDS: -0.23 Total: -28.52 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -35.53 -8.70 -44.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569255538.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.498 kcal (2) G-P(sol) polarization free energy of solvation -35.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds