Wall clock time and date at job start Sat Apr 11 2020 05:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46500 * 120.00026 * 2 1 4 4 C 1.52997 * 109.47037 * 90.00427 * 3 2 1 5 5 C 1.53000 * 109.47013 * 180.02562 * 4 3 2 6 6 N 1.46897 * 109.47189 * 179.97438 * 5 4 3 7 7 C 1.46903 * 111.00153 * 179.97438 * 6 5 4 8 8 C 1.50698 * 109.47147 * 179.97438 * 7 6 5 9 9 O 1.21292 * 120.00321 * 0.02562 * 8 7 6 10 10 N 1.34776 * 120.00226 * 179.97438 * 8 7 6 11 11 C 1.37097 * 120.00379 * 180.02562 * 10 8 7 12 12 H 1.07997 * 119.99974 * 359.97438 * 11 10 8 13 13 C 1.38950 * 120.00140 * 179.97438 * 11 10 8 14 14 N 1.31415 * 119.99684 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00193 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46770 * 0.02562 * 15 13 11 17 17 H 1.48497 * 109.47211 * 120.00086 * 15 13 11 18 18 H 1.48498 * 109.47018 * 240.00408 * 15 13 11 19 19 C 1.34779 * 119.99711 * 179.97438 * 2 1 3 20 20 O 1.21281 * 119.99788 * 179.97438 * 19 2 1 21 21 C 1.50694 * 120.00238 * 0.02562 * 19 2 1 22 22 H 1.09000 * 115.56518 * 27.06882 * 21 19 2 23 23 C 1.53181 * 117.52240 * 172.83627 * 21 19 2 24 24 C 1.52129 * 117.52275 * 241.21046 * 21 19 2 25 25 C 1.54037 * 121.47378 * 141.71110 * 24 21 19 26 26 C 1.55179 * 101.83118 * 195.70826 * 25 24 21 27 27 O 1.44454 * 103.63518 * 36.32877 * 26 25 24 28 28 C 1.43991 * 107.04768 * 320.43326 * 27 26 25 29 29 H 1.08997 * 109.46941 * 89.99960 * 1 2 3 30 30 H 1.08995 * 109.47124 * 209.99905 * 1 2 3 31 31 H 1.08998 * 109.46893 * 330.00171 * 1 2 3 32 32 H 1.08991 * 109.47292 * 329.99799 * 3 2 1 33 33 H 1.09004 * 109.46780 * 210.00279 * 3 2 1 34 34 H 1.08997 * 109.47497 * 59.99998 * 4 3 2 35 35 H 1.09001 * 109.46731 * 299.99712 * 4 3 2 36 36 H 1.09005 * 109.47335 * 59.99505 * 5 4 3 37 37 H 1.09001 * 109.47075 * 299.99426 * 5 4 3 38 38 H 1.00905 * 110.99973 * 303.94822 * 6 5 4 39 39 H 1.08992 * 109.47033 * 299.99608 * 7 6 5 40 40 H 1.08998 * 109.47120 * 59.99947 * 7 6 5 41 41 H 0.97008 * 119.99662 * 0.02562 * 10 8 7 42 42 H 0.97008 * 119.99744 * 179.97438 * 14 13 11 43 43 H 1.08994 * 117.52430 * 214.84689 * 23 21 19 44 44 H 1.08997 * 117.52195 * 359.95195 * 23 21 19 45 45 H 1.08994 * 110.95851 * 313.84608 * 25 24 21 46 46 H 1.09007 * 110.95605 * 77.57527 * 25 24 21 47 47 H 1.09005 * 110.59086 * 277.79741 * 26 25 24 48 48 H 1.09000 * 110.72400 * 154.93489 * 26 25 24 49 49 H 1.08992 * 109.97329 * 266.93756 * 28 27 26 50 50 H 1.09007 * 109.97220 * 145.65946 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7103 1.4425 5 6 3.2170 3.0356 1.4425 6 7 3.4614 3.4600 2.8274 7 6 4.1957 4.7317 2.8666 8 6 4.4268 5.1344 4.3003 9 8 4.0203 4.4309 5.2009 10 7 5.0860 6.2756 4.5819 11 6 5.2968 6.6417 5.8862 12 1 4.9341 6.0157 6.6881 13 6 5.9769 7.8181 6.1765 14 7 6.4178 8.5800 5.2007 15 14 6.2634 8.3172 7.9536 16 1 5.6725 7.2964 8.8558 17 1 7.7225 8.4187 8.2102 18 1 5.6234 9.6329 8.2075 19 6 2.1388 -1.1673 0.0005 20 8 3.3516 -1.1673 0.0001 21 6 1.3853 -2.4723 0.0005 22 1 0.3920 -2.4420 -0.4473 23 6 2.1987 -3.7593 -0.1683 24 6 1.5961 -3.4057 1.1832 25 6 0.4337 -4.2196 1.7824 26 6 1.0235 -4.6578 3.1492 27 8 1.8128 -3.5199 3.5600 28 6 2.4676 -3.0129 2.3821 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6085 2.0283 -0.5138 33 1 3.1499 1.1383 -0.5139 34 1 3.0417 0.9507 1.9563 35 1 1.5001 1.8407 1.9563 36 1 2.6276 3.7951 0.9287 37 1 4.1694 2.9057 0.9285 38 1 2.5968 3.5253 3.3435 39 1 5.1550 4.6131 2.3631 40 1 3.6135 5.5031 2.3623 41 1 5.4115 6.8381 3.8616 42 1 6.8923 9.4015 5.4034 43 1 1.7400 -4.5755 -0.7262 44 1 3.2786 -3.6616 -0.2801 45 1 -0.4489 -3.5952 1.9208 46 1 0.2033 -5.0855 1.1616 47 1 1.6542 -5.5388 3.0298 48 1 0.2277 -4.8521 3.8683 49 1 3.4572 -3.4593 2.2850 50 1 2.5523 -1.9278 2.4411 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569255538.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:58 Heat of formation + Delta-G solvation = -114.927965 kcal Electronic energy + Delta-G solvation = -28981.314220 eV Core-core repulsion = 24815.253878 eV Total energy + Delta-G solvation = -4166.060342 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.71839 -40.22819 -40.08074 -37.81513 -36.84967 -36.47221 -35.87399 -33.36338 -32.87793 -31.29041 -29.08496 -28.47778 -27.63155 -26.86652 -25.45145 -23.79171 -23.67224 -22.44831 -21.11621 -20.95742 -19.93523 -19.67204 -18.34890 -17.94725 -17.52420 -17.19178 -17.13681 -16.69209 -16.55263 -16.27933 -15.99242 -15.89902 -15.72239 -15.13648 -15.06108 -14.94326 -14.47393 -14.19619 -14.03030 -13.80543 -13.58649 -13.51043 -13.40518 -13.32130 -13.11876 -12.96398 -12.86948 -12.74355 -12.49326 -12.45548 -12.42170 -12.12705 -12.00363 -11.73154 -11.53934 -11.44195 -11.13342 -10.78181 -10.70504 -10.39623 -10.04287 -9.71025 -9.34965 -8.49049 -5.98073 1.33676 1.35104 1.40310 1.55015 1.92458 2.01617 2.27861 2.70764 2.87865 2.93267 3.17781 3.19099 3.48640 3.54923 3.67556 3.77303 3.87989 3.97824 4.09447 4.20970 4.22844 4.30261 4.36208 4.40750 4.42682 4.45193 4.50489 4.55110 4.55425 4.59663 4.67926 4.70127 4.77635 4.81534 4.83144 4.91535 4.95674 5.03636 5.07558 5.12134 5.18011 5.38911 5.53083 5.81654 5.86849 6.08587 6.33413 6.37974 6.57508 7.09980 7.11567 7.52879 8.08493 8.68572 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016524 B = 0.001790 C = 0.001671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.134266 B =15641.506425 C =16747.498323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.613 5.613 3 C 0.121 3.879 4 C -0.119 4.119 5 C 0.067 3.933 6 N -0.691 5.691 7 C 0.066 3.934 8 C 0.435 3.565 9 O -0.625 6.625 10 N -0.572 5.572 11 C -0.335 4.335 12 H 0.077 0.923 13 C -0.014 4.014 14 N -0.919 5.919 15 Si 0.995 3.005 16 H -0.274 1.274 17 H -0.271 1.271 18 H -0.268 1.268 19 C 0.529 3.471 20 O -0.581 6.581 21 C -0.171 4.171 22 H 0.161 0.839 23 C -0.120 4.120 24 C -0.137 4.137 25 C -0.107 4.107 26 C 0.036 3.964 27 O -0.405 6.405 28 C 0.083 3.917 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.110 0.890 33 H 0.068 0.932 34 H 0.038 0.962 35 H 0.069 0.931 36 H 0.055 0.945 37 H 0.071 0.929 38 H 0.344 0.656 39 H 0.101 0.899 40 H 0.072 0.928 41 H 0.397 0.603 42 H 0.278 0.722 43 H 0.143 0.857 44 H 0.089 0.911 45 H 0.093 0.907 46 H 0.116 0.884 47 H 0.070 0.930 48 H 0.110 0.890 49 H 0.056 0.944 50 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.740 -23.779 -18.473 34.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.344 5.344 3 C -0.002 4.002 4 C -0.158 4.158 5 C -0.062 4.062 6 N -0.324 5.324 7 C -0.066 4.066 8 C 0.223 3.777 9 O -0.512 6.512 10 N -0.209 5.209 11 C -0.465 4.465 12 H 0.095 0.905 13 C -0.214 4.214 14 N -0.560 5.560 15 Si 0.818 3.182 16 H -0.199 1.199 17 H -0.196 1.196 18 H -0.193 1.193 19 C 0.319 3.681 20 O -0.461 6.461 21 C -0.192 4.192 22 H 0.179 0.821 23 C -0.157 4.157 24 C -0.138 4.138 25 C -0.144 4.144 26 C -0.040 4.040 27 O -0.325 6.325 28 C 0.006 3.994 29 H 0.099 0.901 30 H 0.103 0.897 31 H 0.101 0.899 32 H 0.128 0.872 33 H 0.086 0.914 34 H 0.057 0.943 35 H 0.088 0.912 36 H 0.073 0.927 37 H 0.089 0.911 38 H 0.163 0.837 39 H 0.119 0.881 40 H 0.090 0.910 41 H 0.231 0.769 42 H 0.088 0.912 43 H 0.161 0.839 44 H 0.107 0.893 45 H 0.112 0.888 46 H 0.134 0.866 47 H 0.089 0.911 48 H 0.128 0.872 49 H 0.074 0.926 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -16.712 -24.334 -17.605 34.371 hybrid contribution 0.211 1.532 0.335 1.582 sum -16.501 -22.802 -17.270 33.022 Atomic orbital electron populations 1.22115 0.76848 1.04644 1.03595 1.47901 1.08700 1.05274 1.72509 1.21411 0.97971 0.85090 0.95774 1.21754 1.00108 0.96374 0.97608 1.21902 1.00230 0.95938 0.88127 1.60006 1.27473 1.30400 1.14523 1.21526 1.00952 0.91749 0.92389 1.20915 0.82543 0.82164 0.92086 1.90491 1.56315 1.54625 1.49778 1.41934 1.50182 1.20619 1.08193 1.19706 1.35540 1.06496 0.84718 0.90456 1.26076 0.95893 0.95397 1.03993 1.69682 1.38297 1.14528 1.33513 0.84846 0.78296 0.78152 0.76874 1.19914 1.19573 1.19303 1.20264 0.87085 0.85824 0.74959 1.90703 1.15928 1.87929 1.51586 1.22403 1.03131 0.88684 1.04979 0.82138 1.23122 0.99998 0.96300 0.96246 1.22177 1.00275 1.01462 0.89887 1.22682 0.95718 1.00245 0.95749 1.23879 0.94818 0.88605 0.96694 1.88956 1.64953 1.47542 1.31069 1.22392 0.95135 0.98152 0.83697 0.90136 0.89739 0.89902 0.87225 0.91355 0.94326 0.91227 0.92684 0.91053 0.83711 0.88089 0.90996 0.76881 0.91224 0.83946 0.89296 0.88812 0.86604 0.91127 0.87194 0.92558 0.92563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.55 9.98 127.77 1.28 1.83 16 2 N -0.61 -10.26 2.87 -846.79 -2.43 -12.69 16 3 C 0.12 2.19 5.41 86.38 0.47 2.66 16 4 C -0.12 -2.78 5.80 30.59 0.18 -2.60 16 5 C 0.07 1.67 5.68 86.30 0.49 2.16 16 6 N -0.69 -23.79 6.13 -517.94 -3.17 -26.96 16 7 C 0.07 2.41 6.17 85.56 0.53 2.93 16 8 C 0.44 21.81 7.82 87.66 0.69 22.49 16 9 O -0.63 -36.60 15.78 -3.07 -0.05 -36.65 16 10 N -0.57 -30.46 5.29 -306.99 -1.62 -32.08 16 11 C -0.34 -19.66 9.68 84.04 0.81 -18.84 16 12 H 0.08 4.86 7.16 -2.91 -0.02 4.84 16 13 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 14 N -0.92 -50.51 13.05 21.66 0.28 -50.23 16 15 Si 0.99 43.97 29.55 68.60 2.03 46.00 16 16 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 17 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 18 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 19 C 0.53 11.26 6.31 87.65 0.55 11.81 16 20 O -0.58 -17.77 15.67 -3.03 -0.05 -17.82 16 21 C -0.17 -2.26 4.90 -11.77 -0.06 -2.31 16 22 H 0.16 0.95 6.91 -2.39 -0.02 0.93 16 23 C -0.12 -1.46 9.81 30.37 0.30 -1.17 16 24 C -0.14 -1.97 2.43 -52.29 -0.13 -2.10 16 25 C -0.11 -0.90 6.94 31.69 0.22 -0.68 16 26 C 0.04 0.47 7.73 72.73 0.56 1.03 16 27 O -0.41 -9.74 11.53 -148.98 -1.72 -11.45 16 28 C 0.08 1.93 7.05 72.09 0.51 2.44 16 29 H 0.08 0.31 8.14 -2.39 -0.02 0.29 16 30 H 0.08 0.49 6.51 -2.39 -0.02 0.48 16 31 H 0.08 0.57 8.07 -2.39 -0.02 0.55 16 32 H 0.11 1.29 8.07 -2.39 -0.02 1.27 16 33 H 0.07 1.51 7.42 -2.38 -0.02 1.49 16 34 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 37 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.34 12.17 8.43 -89.69 -0.76 11.42 16 39 H 0.10 3.39 8.14 -2.39 -0.02 3.37 16 40 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 41 H 0.40 19.94 7.90 -92.70 -0.73 19.21 16 42 H 0.28 14.22 8.31 -92.70 -0.77 13.45 16 43 H 0.14 0.73 8.14 -2.39 -0.02 0.71 16 44 H 0.09 1.56 7.69 -2.39 -0.02 1.54 16 45 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 46 H 0.12 0.31 8.13 -2.38 -0.02 0.29 16 47 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 48 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 49 H 0.06 1.37 8.14 -2.39 -0.02 1.36 16 50 H 0.06 1.61 7.22 -2.38 -0.02 1.60 16 Total: -1.00 -82.06 411.91 -0.41 -82.47 By element: Atomic # 1 Polarization: 40.60 SS G_CDS: -0.54 Total: 40.06 kcal Atomic # 6 Polarization: 12.50 SS G_CDS: 6.86 Total: 19.36 kcal Atomic # 7 Polarization: -115.02 SS G_CDS: -6.95 Total: -121.97 kcal Atomic # 8 Polarization: -64.11 SS G_CDS: -1.81 Total: -65.92 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -82.06 -0.41 -82.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569255538.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.456 kcal (2) G-P(sol) polarization free energy of solvation -82.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds