Wall clock time and date at job start Sat Apr 11 2020 05:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46500 * 120.00201 * 2 1 4 4 C 1.52997 * 109.47245 * 270.00001 * 3 2 1 5 5 C 1.53007 * 109.46961 * 180.02562 * 4 3 2 6 6 N 1.46898 * 109.46873 * 180.02562 * 5 4 3 7 7 C 1.46903 * 110.99849 * 179.97438 * 6 5 4 8 8 C 1.50694 * 109.47066 * 179.97438 * 7 6 5 9 9 O 1.21297 * 120.00199 * 359.97438 * 8 7 6 10 10 N 1.34784 * 119.99988 * 180.02562 * 8 7 6 11 11 C 1.37096 * 119.99735 * 179.72439 * 10 8 7 12 12 H 1.07998 * 120.00618 * 0.02562 * 11 10 8 13 13 C 1.38955 * 119.99464 * 179.97438 * 11 10 8 14 14 N 1.31407 * 120.00058 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 119.99669 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.46909 * 90.00283 * 15 13 11 17 17 H 1.48497 * 109.46701 * 210.00192 * 15 13 11 18 18 H 1.48494 * 109.47142 * 330.00117 * 15 13 11 19 19 C 1.34776 * 119.99627 * 180.02562 * 2 1 3 20 20 O 1.21280 * 120.00006 * 179.97438 * 19 2 1 21 21 C 1.50702 * 120.00391 * 359.97438 * 19 2 1 22 22 H 1.09005 * 115.55897 * 34.38187 * 21 19 2 23 23 C 1.53177 * 117.52096 * 248.61268 * 21 19 2 24 24 C 1.52125 * 59.77751 * 252.57430 * 23 21 19 25 25 C 1.54039 * 121.47358 * 249.14853 * 24 23 21 26 26 C 1.55184 * 101.82513 * 195.69335 * 25 24 23 27 27 O 1.44451 * 103.63622 * 36.32927 * 26 25 24 28 28 C 1.43992 * 107.04724 * 320.43252 * 27 26 25 29 29 H 1.09003 * 109.47330 * 89.98997 * 1 2 3 30 30 H 1.08999 * 109.47440 * 209.99548 * 1 2 3 31 31 H 1.09008 * 109.46700 * 329.99816 * 1 2 3 32 32 H 1.09007 * 109.46819 * 150.00113 * 3 2 1 33 33 H 1.09001 * 109.46848 * 30.00656 * 3 2 1 34 34 H 1.09002 * 109.46738 * 60.00546 * 4 3 2 35 35 H 1.08995 * 109.47352 * 299.99870 * 4 3 2 36 36 H 1.08994 * 109.47172 * 60.00360 * 5 4 3 37 37 H 1.08995 * 109.46912 * 300.00055 * 5 4 3 38 38 H 1.00899 * 111.00040 * 303.95417 * 6 5 4 39 39 H 1.08998 * 109.46809 * 60.00017 * 7 6 5 40 40 H 1.09002 * 109.47056 * 299.99758 * 7 6 5 41 41 H 0.97000 * 119.99339 * 0.02562 * 10 8 7 42 42 H 0.97000 * 119.99610 * 179.97438 * 14 13 11 43 43 H 1.09001 * 117.52487 * 0.02562 * 23 21 19 44 44 H 1.09004 * 117.52174 * 145.14909 * 23 21 19 45 45 H 1.08995 * 110.95726 * 313.82630 * 25 24 23 46 46 H 1.09003 * 110.95746 * 77.56121 * 25 24 23 47 47 H 1.08999 * 110.59339 * 277.78350 * 26 25 24 48 48 H 1.09011 * 110.58849 * 154.86602 * 26 25 24 49 49 H 1.09005 * 109.96921 * 266.93425 * 28 27 26 50 50 H 1.08998 * 109.97531 * 145.66409 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 6 3.2182 3.0351 -1.4424 6 7 3.4625 3.4595 -2.8274 7 6 4.1968 4.7312 -2.8665 8 6 4.4289 5.1333 -4.3001 9 8 4.0231 4.4294 -5.2008 10 7 5.0885 6.2745 -4.5817 11 6 5.3046 6.6374 -5.8859 12 1 4.9460 6.0091 -6.6879 13 6 5.9840 7.8142 -6.1761 14 7 6.4199 8.5790 -5.2004 15 14 6.2779 8.3091 -7.9533 16 1 5.1427 9.1392 -8.4301 17 1 7.5369 9.0910 -8.0476 18 1 6.3878 7.0905 -8.7947 19 6 2.1388 -1.1672 -0.0005 20 8 3.3516 -1.1673 -0.0010 21 6 1.3853 -2.4724 -0.0005 22 1 0.4471 -2.4737 -0.5555 23 6 1.4609 -3.3333 1.2641 24 6 2.2022 -3.7558 0.0047 25 6 1.7666 -4.9888 -0.8095 26 6 3.0137 -5.2399 -1.6981 27 8 4.1213 -4.9070 -0.8326 28 6 3.7331 -3.7430 -0.0791 29 1 -0.3634 0.0002 -1.0277 30 1 -0.3634 -0.8900 0.5137 31 1 -0.3633 0.8901 0.5139 32 1 3.1500 1.1383 0.5139 33 1 1.6085 2.0283 0.5139 34 1 1.5001 1.8408 -1.9562 35 1 3.0416 0.9508 -1.9563 36 1 4.1706 2.9043 -0.9288 37 1 2.6295 3.7949 -0.9284 38 1 3.9508 2.7435 -3.3441 39 1 5.1561 4.6124 -2.3629 40 1 3.6147 5.5025 -2.3622 41 1 5.4140 6.8368 -3.8614 42 1 6.8945 9.4003 -5.4031 43 1 2.0552 -2.9553 2.0960 44 1 0.5727 -3.9016 1.5404 45 1 1.5757 -5.8399 -0.1560 46 1 0.8919 -4.7638 -1.4198 47 1 3.0000 -4.5876 -2.5713 48 1 3.0645 -6.2859 -2.0007 49 1 4.0705 -2.8403 -0.5884 50 1 4.1611 -3.7879 0.9223 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569255540.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:06 Heat of formation + Delta-G solvation = -111.043169 kcal Electronic energy + Delta-G solvation = -28735.584574 eV Core-core repulsion = 24569.692690 eV Total energy + Delta-G solvation = -4165.891884 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.72863 -40.21312 -40.00836 -37.76743 -36.83131 -36.49526 -35.87069 -33.36114 -32.86861 -31.26236 -29.08322 -28.44213 -27.55406 -26.75720 -25.44271 -23.88474 -23.53825 -22.48714 -21.12504 -20.90791 -19.93387 -19.86681 -18.29931 -17.89560 -17.37438 -17.18007 -17.03145 -16.61151 -16.44597 -16.43890 -16.05041 -15.87271 -15.63341 -15.26599 -14.98419 -14.81762 -14.34196 -14.22075 -14.01540 -13.96233 -13.56968 -13.50495 -13.32431 -13.30480 -13.14462 -13.02873 -12.86239 -12.70751 -12.44995 -12.40681 -12.34522 -12.13161 -12.00511 -11.72329 -11.53166 -11.51563 -11.03941 -10.93629 -10.39837 -10.25871 -10.04317 -9.70118 -9.39029 -8.48722 -5.97852 1.36816 1.38976 1.40539 1.53625 1.93662 2.01809 2.27935 2.65248 2.90862 2.98768 3.18084 3.21863 3.49259 3.57215 3.70343 3.80207 3.92570 4.01801 4.11162 4.21869 4.24980 4.32442 4.39262 4.43320 4.46021 4.48298 4.49750 4.55137 4.65409 4.71461 4.72969 4.76586 4.79495 4.81887 4.88143 4.97185 4.98398 5.04404 5.06618 5.09789 5.21617 5.38800 5.55327 5.86311 5.87878 6.07837 6.30192 6.35602 6.57589 7.09944 7.13876 7.52951 8.08416 8.68633 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018071 B = 0.001643 C = 0.001561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.052293 B =17036.259785 C =17930.687178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.611 5.611 3 C 0.121 3.879 4 C -0.119 4.119 5 C 0.065 3.935 6 N -0.685 5.685 7 C 0.065 3.935 8 C 0.435 3.565 9 O -0.625 6.625 10 N -0.572 5.572 11 C -0.336 4.336 12 H 0.078 0.922 13 C -0.013 4.013 14 N -0.919 5.919 15 Si 0.995 3.005 16 H -0.269 1.269 17 H -0.269 1.269 18 H -0.274 1.274 19 C 0.530 3.470 20 O -0.576 6.576 21 C -0.173 4.173 22 H 0.155 0.845 23 C -0.109 4.109 24 C -0.147 4.147 25 C -0.108 4.108 26 C 0.036 3.964 27 O -0.409 6.409 28 C 0.072 3.928 29 H 0.061 0.939 30 H 0.095 0.905 31 H 0.090 0.910 32 H 0.067 0.933 33 H 0.109 0.891 34 H 0.072 0.928 35 H 0.037 0.963 36 H 0.033 0.967 37 H 0.092 0.908 38 H 0.339 0.661 39 H 0.064 0.936 40 H 0.110 0.890 41 H 0.397 0.603 42 H 0.278 0.722 43 H 0.095 0.905 44 H 0.143 0.857 45 H 0.100 0.900 46 H 0.104 0.896 47 H 0.053 0.947 48 H 0.111 0.889 49 H 0.068 0.932 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.263 -23.455 18.736 34.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.342 5.342 3 C -0.003 4.003 4 C -0.158 4.158 5 C -0.064 4.064 6 N -0.317 5.317 7 C -0.068 4.068 8 C 0.223 3.777 9 O -0.512 6.512 10 N -0.209 5.209 11 C -0.466 4.466 12 H 0.096 0.904 13 C -0.213 4.213 14 N -0.560 5.560 15 Si 0.818 3.182 16 H -0.195 1.195 17 H -0.194 1.194 18 H -0.199 1.199 19 C 0.319 3.681 20 O -0.457 6.457 21 C -0.193 4.193 22 H 0.173 0.827 23 C -0.146 4.146 24 C -0.148 4.148 25 C -0.145 4.145 26 C -0.040 4.040 27 O -0.329 6.329 28 C -0.004 4.004 29 H 0.080 0.920 30 H 0.113 0.887 31 H 0.109 0.891 32 H 0.085 0.915 33 H 0.127 0.873 34 H 0.091 0.909 35 H 0.056 0.944 36 H 0.051 0.949 37 H 0.110 0.890 38 H 0.157 0.843 39 H 0.082 0.918 40 H 0.128 0.872 41 H 0.231 0.769 42 H 0.088 0.912 43 H 0.113 0.887 44 H 0.161 0.839 45 H 0.119 0.881 46 H 0.122 0.878 47 H 0.071 0.929 48 H 0.129 0.871 49 H 0.086 0.914 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -16.233 -23.514 18.102 33.824 hybrid contribution 1.511 0.788 -0.560 1.793 sum -14.722 -22.726 17.542 32.263 Atomic orbital electron populations 1.22126 0.76776 1.05271 1.03020 1.47933 1.08721 1.05187 1.72319 1.21431 0.97949 0.85059 0.95811 1.21751 1.00805 0.95574 0.97635 1.21948 0.99148 0.97168 0.88132 1.60116 1.52658 1.04619 1.14275 1.21550 0.98492 0.94290 0.92432 1.20901 0.82173 0.82556 0.92067 1.90487 1.56026 1.54948 1.49758 1.41929 1.50025 1.20751 1.08188 1.19677 1.35613 1.06569 0.84737 0.90389 1.26072 0.95911 0.95344 1.03971 1.69671 1.38340 1.14388 1.33583 0.84905 0.78192 0.78184 0.76903 1.19479 1.19411 1.19880 1.20340 0.87034 0.85690 0.74993 1.90632 1.15875 1.87452 1.51751 1.22354 1.02192 0.88049 1.06752 0.82713 1.23043 1.02966 0.99155 0.89411 1.22186 0.93951 0.95411 1.03249 1.22640 0.98496 0.95577 0.97752 1.23787 0.85108 1.02095 0.93035 1.88884 1.40515 1.47229 1.56290 1.22799 0.92689 0.88409 0.96490 0.92010 0.88670 0.89123 0.91479 0.87302 0.90893 0.94398 0.94909 0.88993 0.84298 0.91837 0.87248 0.76891 0.91223 0.88679 0.83888 0.88135 0.87752 0.92854 0.87115 0.91436 0.90651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.48 10.05 127.77 1.28 1.76 16 2 N -0.61 -9.35 2.87 -846.75 -2.43 -11.78 16 3 C 0.12 2.06 5.45 86.38 0.47 2.53 16 4 C -0.12 -2.61 5.80 30.60 0.18 -2.44 16 5 C 0.07 1.57 5.69 86.31 0.49 2.06 16 6 N -0.68 -23.03 6.13 -517.94 -3.17 -26.20 16 7 C 0.06 2.32 6.17 85.55 0.53 2.85 16 8 C 0.44 21.55 7.82 87.65 0.69 22.24 16 9 O -0.63 -36.12 15.78 -3.08 -0.05 -36.17 16 10 N -0.57 -30.18 5.29 -306.97 -1.62 -31.80 16 11 C -0.34 -19.57 9.68 84.04 0.81 -18.76 16 12 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 13 C -0.01 -0.71 5.50 84.93 0.47 -0.25 16 14 N -0.92 -50.21 13.05 21.66 0.28 -49.93 16 15 Si 0.99 43.60 29.55 68.60 2.03 45.63 16 16 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 17 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 18 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 19 C 0.53 10.42 7.46 87.66 0.65 11.07 16 20 O -0.58 -16.49 12.96 -3.03 -0.04 -16.53 16 21 C -0.17 -2.09 4.67 -11.76 -0.05 -2.14 16 22 H 0.16 0.98 7.27 -2.38 -0.02 0.97 16 23 C -0.11 -0.97 10.01 30.36 0.30 -0.66 16 24 C -0.15 -2.13 2.43 -52.29 -0.13 -2.25 16 25 C -0.11 -1.09 6.94 31.69 0.22 -0.87 16 26 C 0.04 0.56 7.73 72.73 0.56 1.13 16 27 O -0.41 -9.95 11.53 -148.98 -1.72 -11.67 16 28 C 0.07 1.66 6.57 72.09 0.47 2.13 16 29 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.09 0.25 6.64 -2.39 -0.02 0.23 16 31 H 0.09 0.37 7.89 -2.38 -0.02 0.35 16 32 H 0.07 1.40 7.42 -2.38 -0.02 1.38 16 33 H 0.11 1.22 7.89 -2.39 -0.02 1.20 16 34 H 0.07 1.61 8.14 -2.39 -0.02 1.60 16 35 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.03 0.77 8.14 -2.39 -0.02 0.76 16 37 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.34 12.50 8.43 -89.69 -0.76 11.74 16 39 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 40 H 0.11 3.43 8.14 -2.39 -0.02 3.41 16 41 H 0.40 19.78 7.90 -92.71 -0.73 19.05 16 42 H 0.28 14.18 8.31 -92.71 -0.77 13.41 16 43 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.14 0.35 8.14 -2.39 -0.02 0.33 16 45 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 46 H 0.10 0.61 8.13 -2.39 -0.02 0.59 16 47 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 48 H 0.11 1.26 8.14 -2.38 -0.02 1.24 16 49 H 0.07 1.98 5.54 -2.38 -0.01 1.97 16 50 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -79.62 408.87 -0.31 -79.93 By element: Atomic # 1 Polarization: 40.65 SS G_CDS: -0.53 Total: 40.12 kcal Atomic # 6 Polarization: 11.45 SS G_CDS: 6.95 Total: 18.39 kcal Atomic # 7 Polarization: -112.77 SS G_CDS: -6.95 Total: -119.71 kcal Atomic # 8 Polarization: -62.56 SS G_CDS: -1.81 Total: -64.36 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -79.62 -0.31 -79.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569255540.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.112 kcal (2) G-P(sol) polarization free energy of solvation -79.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds