Wall clock time and date at job start Sat Apr 11 2020 05:49:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46507 * 120.00102 * 2 1 4 4 C 1.52992 * 109.47485 * 270.00258 * 3 2 1 5 5 C 1.52997 * 109.47482 * 179.97438 * 4 3 2 6 6 N 1.46899 * 109.47254 * 179.97438 * 5 4 3 7 7 C 1.46904 * 111.00029 * 179.97438 * 6 5 4 8 8 C 1.50696 * 109.46800 * 180.02562 * 7 6 5 9 9 O 1.21289 * 120.00338 * 0.02562 * 8 7 6 10 10 N 1.34782 * 119.99855 * 180.02562 * 8 7 6 11 11 C 1.37091 * 120.00193 * 180.02562 * 10 8 7 12 12 H 1.07996 * 120.00199 * 359.97438 * 11 10 8 13 13 C 1.38954 * 119.99891 * 180.02562 * 11 10 8 14 14 N 1.31415 * 119.99703 * 179.97438 * 13 11 10 15 15 Si 1.86799 * 120.00163 * 359.97438 * 13 11 10 16 16 H 1.48500 * 109.46950 * 90.00039 * 15 13 11 17 17 H 1.48495 * 109.47173 * 210.00239 * 15 13 11 18 18 H 1.48502 * 109.46861 * 330.00275 * 15 13 11 19 19 C 1.34776 * 120.00414 * 180.02562 * 2 1 3 20 20 O 1.21275 * 120.00456 * 180.02562 * 19 2 1 21 21 C 1.50698 * 119.99503 * 359.97438 * 19 2 1 22 22 H 1.08998 * 115.56583 * 34.22468 * 21 19 2 23 23 C 1.53184 * 117.52521 * 248.35379 * 21 19 2 24 24 C 1.52096 * 59.77608 * 252.58267 * 23 21 19 25 25 C 1.53709 * 121.74683 * 111.07936 * 24 23 21 26 26 C 1.54700 * 103.68999 * 143.51888 * 25 24 23 27 27 O 1.44491 * 104.87394 * 23.83759 * 26 25 24 28 28 C 1.44645 * 105.45824 * 320.02169 * 27 26 25 29 29 H 1.09000 * 109.47121 * 89.99670 * 1 2 3 30 30 H 1.09001 * 109.46705 * 210.00337 * 1 2 3 31 31 H 1.09004 * 109.46774 * 329.99905 * 1 2 3 32 32 H 1.09002 * 109.47280 * 149.99962 * 3 2 1 33 33 H 1.09001 * 109.46702 * 30.00155 * 3 2 1 34 34 H 1.09002 * 109.47103 * 59.99596 * 4 3 2 35 35 H 1.08998 * 109.46862 * 300.00408 * 4 3 2 36 36 H 1.09002 * 109.47153 * 59.99783 * 5 4 3 37 37 H 1.09001 * 109.46832 * 299.99974 * 5 4 3 38 38 H 1.00908 * 110.99847 * 56.04959 * 6 5 4 39 39 H 1.08995 * 109.47167 * 300.00240 * 7 6 5 40 40 H 1.09003 * 109.46442 * 60.00214 * 7 6 5 41 41 H 0.97000 * 119.99567 * 0.02562 * 10 8 7 42 42 H 0.96996 * 119.99919 * 179.97438 * 14 13 11 43 43 H 1.09000 * 117.52503 * 0.02562 * 23 21 19 44 44 H 1.09003 * 117.52313 * 145.15268 * 23 21 19 45 45 H 1.08992 * 110.58177 * 262.07280 * 25 24 23 46 46 H 1.09003 * 110.57869 * 24.96841 * 25 24 23 47 47 H 1.09005 * 110.35571 * 142.68646 * 26 25 24 48 48 H 1.08999 * 110.35781 * 264.98308 * 26 25 24 49 49 H 1.09000 * 110.41723 * 280.88604 * 28 27 26 50 50 H 1.09003 * 110.41520 * 158.43039 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.4525 1.7105 -1.4424 5 6 3.2170 3.0358 -1.4424 6 7 3.4623 3.4596 -2.8274 7 6 4.1956 4.7320 -2.8665 8 6 4.4276 5.1340 -4.3002 9 8 4.0218 4.4302 -5.2008 10 7 5.0863 6.2757 -4.5818 11 6 5.2970 6.6418 -5.8860 12 1 4.9356 6.0151 -6.6879 13 6 5.9765 7.8186 -6.1762 14 7 6.1789 8.1692 -7.4265 15 14 6.6022 8.9022 -4.7893 16 1 7.9805 8.4893 -4.4218 17 1 6.6118 10.3190 -5.2339 18 1 5.7116 8.7597 -3.6095 19 6 2.1390 -1.1671 -0.0005 20 8 3.3517 -1.1672 -0.0001 21 6 1.3855 -2.4722 -0.0005 22 1 0.4460 -2.4729 -0.5532 23 6 1.4659 -3.3361 1.2619 24 6 2.2023 -3.7556 -0.0011 25 6 3.7369 -3.7362 -0.0867 26 6 4.0711 -4.9758 -0.9499 27 8 2.8759 -5.2223 -1.7234 28 6 1.7741 -4.9857 -0.8165 29 1 -0.3633 0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5139 32 1 3.1500 1.1385 0.5138 33 1 1.6084 2.0284 0.5139 34 1 1.5001 1.8409 -1.9562 35 1 3.0415 0.9509 -1.9563 36 1 4.1694 2.9059 -0.9284 37 1 2.6275 3.7952 -0.9286 38 1 2.5980 3.5247 -3.3441 39 1 3.6124 5.5031 -2.3632 40 1 5.1546 4.6143 -2.3619 41 1 5.4112 6.8384 -3.8615 42 1 6.6528 8.9908 -7.6291 43 1 2.0635 -2.9601 2.0923 44 1 0.5788 -3.9051 1.5403 45 1 4.0819 -2.8249 -0.5751 46 1 4.1773 -3.8304 0.9059 47 1 4.9125 -4.7629 -1.6094 48 1 4.2943 -5.8320 -0.3134 49 1 1.6296 -5.8448 -0.1615 50 1 0.8617 -4.7737 -1.3739 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569255541.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:11 Heat of formation + Delta-G solvation = -76.223645 kcal Electronic energy + Delta-G solvation = -28767.170507 eV Core-core repulsion = 24602.788510 eV Total energy + Delta-G solvation = -4164.381996 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -41.04795 -39.36170 -38.47167 -36.88943 -36.01514 -35.50925 -33.91424 -32.02346 -31.58943 -30.57525 -28.19121 -27.71047 -26.80311 -25.46471 -23.93442 -23.10161 -22.73869 -21.57451 -20.35993 -19.34878 -19.16890 -18.30544 -17.58664 -16.77013 -16.28708 -16.27228 -15.91724 -15.75659 -15.72632 -15.30624 -14.92892 -14.68560 -14.29227 -14.18258 -13.82801 -13.58477 -13.53936 -13.14003 -13.12999 -13.01839 -12.74894 -12.70043 -12.55667 -12.26590 -12.14133 -11.84657 -11.80970 -11.72695 -11.43936 -11.30471 -11.14872 -10.95281 -10.80373 -10.58147 -10.47588 -10.08522 -9.95773 -9.67580 -9.55410 -9.03353 -8.56559 -8.17184 -8.10584 -6.29155 -3.80454 2.10452 2.55931 3.03617 3.08547 3.16162 3.18892 3.61501 3.76454 3.85588 4.10960 4.12974 4.15250 4.22946 4.42924 4.57974 4.67467 4.77959 4.83856 4.86678 4.96765 5.00432 5.05148 5.07069 5.10117 5.17035 5.21383 5.22576 5.27013 5.31767 5.35085 5.39764 5.42308 5.48732 5.61072 5.64977 5.65342 5.83345 5.93605 5.99174 6.03629 6.14161 6.29403 6.43437 7.00267 7.13526 7.59749 7.61532 7.86839 8.16744 8.62084 8.97100 9.44539 9.85206 10.84036 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018607 B = 0.001684 C = 0.001612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.458176 B =16625.876272 C =17368.438392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.613 5.613 3 C 0.118 3.882 4 C -0.132 4.132 5 C 0.064 3.936 6 N -0.669 5.669 7 C 0.048 3.952 8 C 0.450 3.550 9 O -0.564 6.564 10 N -0.591 5.591 11 C -0.305 4.305 12 H 0.119 0.881 13 C 0.040 3.960 14 N -0.882 5.882 15 Si 0.881 3.119 16 H -0.270 1.270 17 H -0.277 1.277 18 H -0.270 1.270 19 C 0.545 3.455 20 O -0.526 6.526 21 C -0.175 4.175 22 H 0.127 0.873 23 C -0.133 4.133 24 C -0.129 4.129 25 C -0.129 4.129 26 C 0.044 3.956 27 O -0.372 6.372 28 C 0.082 3.918 29 H 0.058 0.942 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.062 0.938 35 H 0.078 0.922 36 H 0.072 0.928 37 H 0.026 0.974 38 H 0.350 0.650 39 H 0.044 0.956 40 H 0.087 0.913 41 H 0.370 0.630 42 H 0.273 0.727 43 H 0.103 0.897 44 H 0.108 0.892 45 H 0.115 0.885 46 H 0.076 0.924 47 H 0.093 0.907 48 H 0.057 0.943 49 H 0.069 0.931 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.205 -21.898 24.548 35.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.346 5.346 3 C -0.005 4.005 4 C -0.171 4.171 5 C -0.066 4.066 6 N -0.301 5.301 7 C -0.084 4.084 8 C 0.236 3.764 9 O -0.446 6.446 10 N -0.231 5.231 11 C -0.433 4.433 12 H 0.137 0.863 13 C -0.162 4.162 14 N -0.522 5.522 15 Si 0.707 3.293 16 H -0.196 1.196 17 H -0.202 1.202 18 H -0.196 1.196 19 C 0.333 3.667 20 O -0.403 6.403 21 C -0.196 4.196 22 H 0.144 0.856 23 C -0.170 4.170 24 C -0.129 4.129 25 C -0.166 4.166 26 C -0.033 4.033 27 O -0.291 6.291 28 C 0.005 3.995 29 H 0.077 0.923 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.104 0.896 33 H 0.095 0.905 34 H 0.081 0.919 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.044 0.956 38 H 0.169 0.831 39 H 0.062 0.938 40 H 0.106 0.894 41 H 0.203 0.797 42 H 0.084 0.916 43 H 0.122 0.878 44 H 0.127 0.873 45 H 0.133 0.867 46 H 0.095 0.905 47 H 0.111 0.889 48 H 0.075 0.925 49 H 0.087 0.913 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -12.191 -22.654 23.470 34.824 hybrid contribution -0.330 1.898 1.417 2.392 sum -12.521 -20.756 24.887 34.741 Atomic orbital electron populations 1.21846 0.79335 1.03260 1.02188 1.47803 1.07122 1.05990 1.73693 1.21484 0.97778 0.83836 0.97401 1.21888 1.00774 0.97997 0.96414 1.21856 0.99568 0.95016 0.90206 1.60030 1.27568 1.30626 1.11926 1.21704 0.99593 0.90631 0.96508 1.19729 0.83863 0.82961 0.89893 1.90565 1.53628 1.52861 1.47536 1.42206 1.51878 1.20863 1.08133 1.19439 1.34300 1.06846 0.82757 0.86289 1.25046 0.97500 0.97184 0.96504 1.69625 1.41073 1.24456 1.17027 0.86657 0.79770 0.81062 0.81801 1.19582 1.20206 1.19562 1.19650 0.87290 0.84165 0.75597 1.90624 1.13715 1.86605 1.49358 1.22239 1.01976 0.90304 1.05041 0.85568 1.22906 1.02682 1.00726 0.90719 1.22180 0.95785 0.94617 1.00354 1.22728 0.91592 1.00857 1.01414 1.23532 0.88852 0.96354 0.94519 1.89189 1.15110 1.90327 1.34460 1.22796 0.91118 0.93982 0.91590 0.92328 0.90831 0.90826 0.89629 0.90540 0.91894 0.90351 0.90919 0.95585 0.83103 0.93819 0.89446 0.79694 0.91637 0.87835 0.87333 0.86698 0.90517 0.88857 0.92477 0.91341 0.88976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.37 10.05 59.85 0.60 0.97 16 2 N -0.61 -5.07 2.87 -181.57 -0.52 -5.60 16 3 C 0.12 1.03 5.45 -4.04 -0.02 1.01 16 4 C -0.13 -1.43 5.80 -26.74 -0.16 -1.59 16 5 C 0.06 0.76 5.69 -3.83 -0.02 0.74 16 6 N -0.67 -10.87 6.13 -115.06 -0.70 -11.57 16 7 C 0.05 0.83 6.17 -4.98 -0.03 0.80 16 8 C 0.45 10.53 7.82 -10.99 -0.09 10.44 16 9 O -0.56 -15.63 15.78 5.55 0.09 -15.54 16 10 N -0.59 -14.41 5.09 -10.97 -0.06 -14.46 16 11 C -0.30 -8.79 10.16 -14.93 -0.15 -8.94 16 12 H 0.12 3.92 7.39 -52.49 -0.39 3.53 16 13 C 0.04 1.13 5.50 -17.46 -0.10 1.03 16 14 N -0.88 -26.08 13.96 55.50 0.77 -25.31 16 15 Si 0.88 19.61 27.74 -169.99 -4.71 14.90 16 16 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 17 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 18 H -0.27 -5.47 6.52 56.52 0.37 -5.10 16 19 C 0.54 5.48 7.46 -10.99 -0.08 5.40 16 20 O -0.53 -7.07 12.92 5.56 0.07 -7.00 16 21 C -0.17 -1.26 4.68 -92.12 -0.43 -1.69 16 22 H 0.13 0.67 7.26 -51.93 -0.38 0.30 16 23 C -0.13 -0.72 10.01 -27.10 -0.27 -0.99 16 24 C -0.13 -0.99 2.50 -154.70 -0.39 -1.38 16 25 C -0.13 -1.19 5.95 -25.47 -0.15 -1.34 16 26 C 0.04 0.38 7.65 38.05 0.29 0.68 16 27 O -0.37 -3.94 11.65 -35.23 -0.41 -4.35 16 28 C 0.08 0.60 7.44 37.51 0.28 0.88 16 29 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 0.24 6.64 -51.93 -0.34 -0.11 16 31 H 0.07 0.26 7.89 -51.93 -0.41 -0.15 16 32 H 0.09 0.86 7.42 -51.93 -0.39 0.48 16 33 H 0.08 0.50 7.89 -51.93 -0.41 0.09 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 38 H 0.35 5.81 8.43 -39.29 -0.33 5.48 16 39 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 41 H 0.37 7.90 5.76 -40.82 -0.24 7.66 16 42 H 0.27 7.44 8.31 -40.82 -0.34 7.11 16 43 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.11 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.12 1.40 5.48 -51.93 -0.28 1.11 16 46 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 48 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 50 H 0.09 0.56 8.12 -51.93 -0.42 0.14 16 LS Contribution 405.64 15.07 6.11 6.11 Total: -1.00 -36.40 405.64 -8.33 -44.72 By element: Atomic # 1 Polarization: 20.33 SS G_CDS: -8.25 Total: 12.08 kcal Atomic # 6 Polarization: 6.74 SS G_CDS: -0.71 Total: 6.02 kcal Atomic # 7 Polarization: -56.43 SS G_CDS: -0.51 Total: -56.94 kcal Atomic # 8 Polarization: -26.65 SS G_CDS: -0.25 Total: -26.90 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -4.71 Total: 14.90 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -36.40 -8.33 -44.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569255541.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.499 kcal (2) G-P(sol) polarization free energy of solvation -36.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds