Wall clock time and date at job start Sat Apr 11 2020 05:49:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46507 * 120.00102 * 2 1 4 4 C 1.52992 * 109.47485 * 270.00258 * 3 2 1 5 5 C 1.52997 * 109.47482 * 179.97438 * 4 3 2 6 6 N 1.46899 * 109.47254 * 179.97438 * 5 4 3 7 7 C 1.46904 * 111.00029 * 179.97438 * 6 5 4 8 8 C 1.50696 * 109.46800 * 180.02562 * 7 6 5 9 9 O 1.21289 * 120.00338 * 0.02562 * 8 7 6 10 10 N 1.34782 * 119.99855 * 180.02562 * 8 7 6 11 11 C 1.37091 * 120.00193 * 180.02562 * 10 8 7 12 12 H 1.07996 * 120.00199 * 359.97438 * 11 10 8 13 13 C 1.38954 * 119.99891 * 180.02562 * 11 10 8 14 14 N 1.31415 * 119.99703 * 179.97438 * 13 11 10 15 15 Si 1.86799 * 120.00163 * 359.97438 * 13 11 10 16 16 H 1.48500 * 109.46950 * 90.00039 * 15 13 11 17 17 H 1.48495 * 109.47173 * 210.00239 * 15 13 11 18 18 H 1.48502 * 109.46861 * 330.00275 * 15 13 11 19 19 C 1.34776 * 120.00414 * 180.02562 * 2 1 3 20 20 O 1.21275 * 120.00456 * 180.02562 * 19 2 1 21 21 C 1.50698 * 119.99503 * 359.97438 * 19 2 1 22 22 H 1.08998 * 115.56583 * 34.22468 * 21 19 2 23 23 C 1.53184 * 117.52521 * 248.35379 * 21 19 2 24 24 C 1.52096 * 59.77608 * 252.58267 * 23 21 19 25 25 C 1.53709 * 121.74683 * 111.07936 * 24 23 21 26 26 C 1.54700 * 103.68999 * 143.51888 * 25 24 23 27 27 O 1.44491 * 104.87394 * 23.83759 * 26 25 24 28 28 C 1.44645 * 105.45824 * 320.02169 * 27 26 25 29 29 H 1.09000 * 109.47121 * 89.99670 * 1 2 3 30 30 H 1.09001 * 109.46705 * 210.00337 * 1 2 3 31 31 H 1.09004 * 109.46774 * 329.99905 * 1 2 3 32 32 H 1.09002 * 109.47280 * 149.99962 * 3 2 1 33 33 H 1.09001 * 109.46702 * 30.00155 * 3 2 1 34 34 H 1.09002 * 109.47103 * 59.99596 * 4 3 2 35 35 H 1.08998 * 109.46862 * 300.00408 * 4 3 2 36 36 H 1.09002 * 109.47153 * 59.99783 * 5 4 3 37 37 H 1.09001 * 109.46832 * 299.99974 * 5 4 3 38 38 H 1.00908 * 110.99847 * 56.04959 * 6 5 4 39 39 H 1.08995 * 109.47167 * 300.00240 * 7 6 5 40 40 H 1.09003 * 109.46442 * 60.00214 * 7 6 5 41 41 H 0.97000 * 119.99567 * 0.02562 * 10 8 7 42 42 H 0.96996 * 119.99919 * 179.97438 * 14 13 11 43 43 H 1.09000 * 117.52503 * 0.02562 * 23 21 19 44 44 H 1.09003 * 117.52313 * 145.15268 * 23 21 19 45 45 H 1.08992 * 110.58177 * 262.07280 * 25 24 23 46 46 H 1.09003 * 110.57869 * 24.96841 * 25 24 23 47 47 H 1.09005 * 110.35571 * 142.68646 * 26 25 24 48 48 H 1.08999 * 110.35781 * 264.98308 * 26 25 24 49 49 H 1.09000 * 110.41723 * 280.88604 * 28 27 26 50 50 H 1.09003 * 110.41520 * 158.43039 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.4525 1.7105 -1.4424 5 6 3.2170 3.0358 -1.4424 6 7 3.4623 3.4596 -2.8274 7 6 4.1956 4.7320 -2.8665 8 6 4.4276 5.1340 -4.3002 9 8 4.0218 4.4302 -5.2008 10 7 5.0863 6.2757 -4.5818 11 6 5.2970 6.6418 -5.8860 12 1 4.9356 6.0151 -6.6879 13 6 5.9765 7.8186 -6.1762 14 7 6.1789 8.1692 -7.4265 15 14 6.6022 8.9022 -4.7893 16 1 7.9805 8.4893 -4.4218 17 1 6.6118 10.3190 -5.2339 18 1 5.7116 8.7597 -3.6095 19 6 2.1390 -1.1671 -0.0005 20 8 3.3517 -1.1672 -0.0001 21 6 1.3855 -2.4722 -0.0005 22 1 0.4460 -2.4729 -0.5532 23 6 1.4659 -3.3361 1.2619 24 6 2.2023 -3.7556 -0.0011 25 6 3.7369 -3.7362 -0.0867 26 6 4.0711 -4.9758 -0.9499 27 8 2.8759 -5.2223 -1.7234 28 6 1.7741 -4.9857 -0.8165 29 1 -0.3633 0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5139 32 1 3.1500 1.1385 0.5138 33 1 1.6084 2.0284 0.5139 34 1 1.5001 1.8409 -1.9562 35 1 3.0415 0.9509 -1.9563 36 1 4.1694 2.9059 -0.9284 37 1 2.6275 3.7952 -0.9286 38 1 2.5980 3.5247 -3.3441 39 1 3.6124 5.5031 -2.3632 40 1 5.1546 4.6143 -2.3619 41 1 5.4112 6.8384 -3.8615 42 1 6.6528 8.9908 -7.6291 43 1 2.0635 -2.9601 2.0923 44 1 0.5788 -3.9051 1.5403 45 1 4.0819 -2.8249 -0.5751 46 1 4.1773 -3.8304 0.9059 47 1 4.9125 -4.7629 -1.6094 48 1 4.2943 -5.8320 -0.3134 49 1 1.6296 -5.8448 -0.1615 50 1 0.8617 -4.7737 -1.3739 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569255541.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:10 Heat of formation + Delta-G solvation = -105.257959 kcal Electronic energy + Delta-G solvation = -28768.429529 eV Core-core repulsion = 24602.788510 eV Total energy + Delta-G solvation = -4165.641019 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.68384 -40.34695 -40.01617 -37.78476 -36.79946 -36.46063 -35.91342 -33.78955 -32.94139 -31.26440 -29.20291 -28.42020 -27.59020 -26.67419 -25.26408 -23.86252 -23.56461 -22.46791 -21.31520 -20.94534 -20.27158 -19.80634 -18.22155 -17.89678 -17.35286 -17.18057 -16.91172 -16.72237 -16.66826 -16.42569 -16.01723 -15.78247 -15.63587 -15.12200 -15.02178 -14.90769 -14.38880 -14.30700 -14.17646 -14.07269 -13.71691 -13.43877 -13.41147 -13.28716 -13.17803 -13.01353 -12.83657 -12.71084 -12.48067 -12.43082 -12.39045 -11.98364 -11.90609 -11.69871 -11.53605 -11.48784 -11.06545 -10.70181 -10.49009 -10.38854 -10.27195 -9.68578 -9.34331 -8.43000 -6.04407 1.29061 1.35232 1.43141 1.44045 1.92452 1.96549 2.22051 2.63902 2.72928 3.02550 3.12897 3.31048 3.41840 3.57791 3.70300 3.87364 3.95648 4.03218 4.11915 4.14281 4.24893 4.30327 4.38302 4.41893 4.45598 4.47655 4.52337 4.54973 4.60368 4.66869 4.70950 4.72973 4.77039 4.79879 4.84449 4.93104 4.97572 5.04302 5.14610 5.18982 5.32086 5.50935 5.60015 5.81392 5.88613 6.04140 6.36105 6.38111 6.57776 6.85609 7.17983 7.37021 7.93748 8.74702 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018607 B = 0.001684 C = 0.001612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.458176 B =16625.876272 C =17368.438392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.613 5.613 3 C 0.122 3.878 4 C -0.121 4.121 5 C 0.068 3.932 6 N -0.695 5.695 7 C 0.063 3.937 8 C 0.446 3.554 9 O -0.617 6.617 10 N -0.589 5.589 11 C -0.332 4.332 12 H 0.053 0.947 13 C -0.016 4.016 14 N -0.934 5.934 15 Si 0.968 3.032 16 H -0.258 1.258 17 H -0.273 1.273 18 H -0.230 1.230 19 C 0.531 3.469 20 O -0.572 6.572 21 C -0.180 4.180 22 H 0.149 0.851 23 C -0.104 4.104 24 C -0.147 4.147 25 C -0.129 4.129 26 C 0.043 3.957 27 O -0.404 6.404 28 C 0.081 3.919 29 H 0.059 0.941 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.068 0.932 33 H 0.109 0.891 34 H 0.067 0.933 35 H 0.037 0.963 36 H 0.074 0.926 37 H 0.057 0.943 38 H 0.344 0.656 39 H 0.082 0.918 40 H 0.111 0.889 41 H 0.391 0.609 42 H 0.280 0.720 43 H 0.097 0.903 44 H 0.143 0.857 45 H 0.080 0.920 46 H 0.080 0.920 47 H 0.085 0.915 48 H 0.077 0.923 49 H 0.090 0.910 50 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.868 -21.313 29.033 38.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.345 5.345 3 C -0.001 4.001 4 C -0.160 4.160 5 C -0.061 4.061 6 N -0.328 5.328 7 C -0.069 4.069 8 C 0.234 3.766 9 O -0.502 6.502 10 N -0.231 5.231 11 C -0.461 4.461 12 H 0.072 0.928 13 C -0.215 4.215 14 N -0.574 5.574 15 Si 0.787 3.213 16 H -0.183 1.183 17 H -0.198 1.198 18 H -0.153 1.153 19 C 0.321 3.679 20 O -0.452 6.452 21 C -0.201 4.201 22 H 0.166 0.834 23 C -0.141 4.141 24 C -0.147 4.147 25 C -0.166 4.166 26 C -0.033 4.033 27 O -0.323 6.323 28 C 0.005 3.995 29 H 0.077 0.923 30 H 0.112 0.888 31 H 0.110 0.890 32 H 0.087 0.913 33 H 0.127 0.873 34 H 0.086 0.914 35 H 0.056 0.944 36 H 0.092 0.908 37 H 0.075 0.925 38 H 0.163 0.837 39 H 0.100 0.900 40 H 0.129 0.871 41 H 0.226 0.774 42 H 0.089 0.911 43 H 0.116 0.884 44 H 0.161 0.839 45 H 0.098 0.902 46 H 0.098 0.902 47 H 0.103 0.897 48 H 0.095 0.905 49 H 0.108 0.892 50 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -13.897 -22.076 27.992 38.263 hybrid contribution 0.142 1.636 -0.090 1.645 sum -13.755 -20.439 27.902 37.222 Atomic orbital electron populations 1.22103 0.76945 1.05247 1.02843 1.47949 1.08636 1.05292 1.72596 1.21427 0.97980 0.84995 0.95744 1.21767 1.00085 0.96516 0.97664 1.21905 1.00350 0.95906 0.87950 1.60021 1.27658 1.30478 1.14666 1.21626 1.01668 0.92090 0.91523 1.21037 0.81588 0.81596 0.92391 1.90542 1.55195 1.54264 1.50155 1.42019 1.52489 1.21764 1.06828 1.19013 1.36174 1.07263 0.83622 0.92838 1.26164 0.96719 0.98391 1.00206 1.69809 1.41839 1.25438 1.20332 0.85329 0.79918 0.77682 0.78358 1.18255 1.19823 1.15285 1.20273 0.87072 0.85621 0.74953 1.90616 1.15755 1.87377 1.51468 1.22325 1.02208 0.88618 1.06946 0.83384 1.23016 1.02910 0.98914 0.89271 1.22228 0.94624 0.95220 1.02668 1.22594 0.93423 0.99431 1.01170 1.23577 0.88372 0.96887 0.94452 1.89142 1.16404 1.90550 1.36224 1.23001 0.90452 0.94510 0.91567 0.92281 0.88815 0.88994 0.91326 0.87281 0.91390 0.94357 0.90783 0.92462 0.83723 0.90006 0.87055 0.77373 0.91082 0.88422 0.83942 0.90205 0.90159 0.89681 0.90476 0.89205 0.87804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.48 10.05 127.77 1.28 1.76 16 2 N -0.61 -9.31 2.87 -846.76 -2.43 -11.74 16 3 C 0.12 1.95 5.45 86.38 0.47 2.42 16 4 C -0.12 -2.56 5.80 30.59 0.18 -2.39 16 5 C 0.07 1.48 5.69 86.30 0.49 1.97 16 6 N -0.70 -21.84 6.13 -517.93 -3.17 -25.01 16 7 C 0.06 2.01 6.17 85.55 0.53 2.54 16 8 C 0.45 20.91 7.82 87.65 0.69 21.60 16 9 O -0.62 -35.70 15.78 -3.06 -0.05 -35.75 16 10 N -0.59 -28.53 5.09 -306.99 -1.56 -30.09 16 11 C -0.33 -19.89 10.16 84.04 0.85 -19.04 16 12 H 0.05 3.83 7.39 -2.91 -0.02 3.80 16 13 C -0.02 -0.91 5.50 84.93 0.47 -0.45 16 14 N -0.93 -57.10 13.96 21.66 0.30 -56.79 16 15 Si 0.97 39.21 27.74 68.60 1.90 41.12 16 16 H -0.26 -9.98 7.11 99.48 0.71 -9.28 16 17 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 18 H -0.23 -7.76 6.52 99.48 0.65 -7.11 16 19 C 0.53 10.60 7.46 87.66 0.65 11.25 16 20 O -0.57 -16.27 12.92 -3.01 -0.04 -16.31 16 21 C -0.18 -2.31 4.68 -11.77 -0.06 -2.37 16 22 H 0.15 1.18 7.26 -2.39 -0.02 1.17 16 23 C -0.10 -0.85 10.01 30.36 0.30 -0.55 16 24 C -0.15 -2.11 2.50 -52.30 -0.13 -2.24 16 25 C -0.13 -2.50 5.95 31.41 0.19 -2.31 16 26 C 0.04 0.79 7.65 72.56 0.56 1.34 16 27 O -0.40 -8.59 11.65 -148.98 -1.74 -10.32 16 28 C 0.08 1.06 7.44 72.21 0.54 1.60 16 29 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.09 0.27 6.64 -2.39 -0.02 0.25 16 31 H 0.09 0.31 7.89 -2.39 -0.02 0.29 16 32 H 0.07 1.36 7.42 -2.39 -0.02 1.34 16 33 H 0.11 1.05 7.89 -2.39 -0.02 1.03 16 34 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.34 11.32 8.43 -89.69 -0.76 10.56 16 39 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 40 H 0.11 3.06 8.14 -2.39 -0.02 3.04 16 41 H 0.39 15.52 5.76 -92.71 -0.53 14.99 16 42 H 0.28 15.58 8.31 -92.71 -0.77 14.81 16 43 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.14 0.23 8.14 -2.39 -0.02 0.21 16 45 H 0.08 2.15 5.48 -2.39 -0.01 2.14 16 46 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 47 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 48 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 49 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 50 H 0.10 1.06 8.12 -2.39 -0.02 1.04 16 Total: -1.00 -88.51 405.64 -0.17 -88.68 By element: Atomic # 1 Polarization: 41.48 SS G_CDS: -0.39 Total: 41.08 kcal Atomic # 6 Polarization: 8.13 SS G_CDS: 7.01 Total: 15.14 kcal Atomic # 7 Polarization: -116.77 SS G_CDS: -6.87 Total: -123.64 kcal Atomic # 8 Polarization: -60.56 SS G_CDS: -1.82 Total: -62.39 kcal Atomic # 14 Polarization: 39.21 SS G_CDS: 1.90 Total: 41.12 kcal Total: -88.51 -0.17 -88.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569255541.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.576 kcal (2) G-P(sol) polarization free energy of solvation -88.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds