Wall clock time and date at job start Sat Apr 11 2020 05:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34777 * 119.99750 * 2 1 4 4 O 1.21282 * 120.00341 * 359.97438 * 3 2 1 5 5 C 1.50699 * 119.99618 * 179.97438 * 3 2 1 6 6 C 1.53006 * 109.47240 * 179.97438 * 5 3 2 7 7 C 1.52999 * 109.47000 * 180.02562 * 6 5 3 8 8 C 1.53006 * 109.46626 * 180.02562 * 7 6 5 9 9 C 1.50699 * 109.46866 * 179.97438 * 8 7 6 10 10 O 1.21282 * 120.00041 * 359.97438 * 9 8 7 11 11 N 1.34779 * 120.00037 * 180.02562 * 9 8 7 12 12 C 1.47128 * 121.05464 * 359.71534 * 11 9 8 13 13 C 1.52763 * 108.97815 * 232.17287 * 12 11 9 14 14 O 1.43104 * 109.42184 * 306.12006 * 13 12 11 15 15 C 1.42490 * 113.96682 * 59.83116 * 14 13 12 16 16 C 1.53464 * 113.76565 * 73.17376 * 15 14 13 17 17 N 1.47667 * 85.97182 * 91.28390 * 16 15 14 18 18 C 1.36939 * 134.45821 * 204.31552 * 17 16 15 19 19 H 1.07996 * 120.00116 * 179.97438 * 18 17 16 20 20 C 1.38811 * 119.99948 * 359.96615 * 18 17 16 21 21 N 1.31626 * 119.99734 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00323 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46954 * 60.00138 * 22 20 18 24 24 H 1.48502 * 109.47282 * 180.02562 * 22 20 18 25 25 H 1.48493 * 109.47209 * 300.00403 * 22 20 18 26 26 C 1.47673 * 91.08930 * 24.29388 * 17 16 15 27 27 C 1.47342 * 121.05348 * 180.02562 * 11 9 8 28 28 H 1.09004 * 109.47042 * 300.00299 * 1 2 3 29 29 H 1.09000 * 109.47175 * 60.00340 * 1 2 3 30 30 H 1.09002 * 109.47617 * 180.02562 * 1 2 3 31 31 H 0.96996 * 119.99986 * 179.97438 * 2 1 3 32 32 H 1.09004 * 109.47103 * 59.99746 * 5 3 2 33 33 H 1.09000 * 109.47247 * 299.99624 * 5 3 2 34 34 H 1.08993 * 109.46765 * 59.99668 * 6 5 3 35 35 H 1.09000 * 109.46866 * 300.00069 * 6 5 3 36 36 H 1.08993 * 109.47839 * 60.00073 * 7 6 5 37 37 H 1.09000 * 109.47160 * 299.99635 * 7 6 5 38 38 H 1.09000 * 109.47050 * 299.99699 * 8 7 6 39 39 H 1.09001 * 109.46801 * 59.99811 * 8 7 6 40 40 H 1.09003 * 109.59276 * 352.00607 * 12 11 9 41 41 H 1.08999 * 109.59243 * 112.45621 * 12 11 9 42 42 H 1.09007 * 109.56453 * 186.06610 * 13 12 11 43 43 H 1.09002 * 109.36073 * 66.05283 * 13 12 11 44 44 H 1.09004 * 113.79329 * 205.54885 * 16 15 14 45 45 H 1.08997 * 113.79415 * 337.01654 * 16 15 14 46 46 H 0.97000 * 119.99924 * 179.97438 * 21 20 18 47 47 H 1.09003 * 113.79083 * 221.44279 * 26 17 16 48 48 H 1.09001 * 113.90106 * 89.98120 * 26 17 16 49 49 H 1.09002 * 109.74330 * 251.23015 * 27 11 9 50 50 H 1.09002 * 109.75015 * 11.91494 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5324 2.2176 -0.0005 5 6 3.6458 1.1672 0.0006 6 6 4.1559 2.6097 -0.0002 7 6 5.6859 2.6096 -0.0002 8 6 6.1959 4.0522 -0.0004 9 6 7.7029 4.0522 0.0002 10 8 8.3093 3.0018 0.0012 11 7 8.3768 5.2194 0.0007 12 6 7.6648 6.5069 -0.0055 13 6 8.2050 7.3678 -1.1460 14 8 9.6276 7.4722 -1.0307 15 6 10.3061 6.2204 -1.0854 16 6 10.3444 5.5985 -2.4879 17 7 11.6254 6.3134 -2.6565 18 6 12.3369 6.7650 -3.7359 19 1 13.2771 7.2752 -3.5877 20 6 11.8496 6.5668 -5.0205 21 7 10.7035 5.9452 -5.2010 22 14 12.8204 7.1821 -6.4930 23 1 14.1559 6.5329 -6.5117 24 1 12.0898 6.8485 -7.7421 25 1 12.9872 8.6544 -6.3958 26 6 11.8315 6.3469 -1.1946 27 6 9.8500 5.2464 0.0008 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.9500 -0.8400 0.0004 32 1 4.0095 0.6531 -0.8892 33 1 4.0088 0.6536 0.8908 34 1 3.7922 3.1241 0.8892 35 1 3.7929 3.1229 -0.8907 36 1 6.0493 2.0954 -0.8899 37 1 6.0492 2.0963 0.8900 38 1 5.8325 4.5659 -0.8904 39 1 5.8325 4.5661 0.8896 40 1 6.5987 6.3343 -0.1529 41 1 7.8267 7.0187 0.9431 42 1 7.7619 8.3624 -1.0940 43 1 7.9502 6.9055 -2.0997 44 1 10.4437 4.5130 -2.4850 45 1 9.5527 5.9530 -3.1479 46 1 10.3629 5.8070 -6.0986 47 1 12.2214 7.2961 -0.8271 48 1 12.3732 5.4848 -0.8052 49 1 10.2121 5.5828 0.9723 50 1 10.2367 4.2496 -0.2115 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570228170.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:25 Heat of formation + Delta-G solvation = -61.075602 kcal Electronic energy + Delta-G solvation = -29785.086770 eV Core-core repulsion = 25621.361642 eV Total energy + Delta-G solvation = -4163.725128 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.39249 -39.98023 -38.75988 -36.21682 -35.48170 -34.86529 -34.37793 -32.27671 -31.33029 -29.92336 -28.18233 -27.42996 -26.16490 -25.06106 -24.48068 -23.26135 -21.95642 -21.24614 -20.67577 -19.15269 -18.68395 -17.49641 -17.05644 -16.77630 -16.45693 -16.23650 -16.08164 -15.70883 -15.39178 -14.93117 -14.73484 -14.38693 -14.15600 -14.09805 -13.80691 -13.68631 -13.27782 -13.22398 -12.82502 -12.74246 -12.62378 -12.41964 -12.32561 -12.01246 -11.68125 -11.52624 -11.31799 -11.25331 -11.10202 -10.84846 -10.79189 -10.74739 -10.61884 -10.23013 -10.19312 -9.96872 -9.59332 -9.53875 -9.49272 -9.20622 -8.79626 -8.20135 -6.85171 -5.72373 -3.04596 2.32337 2.75842 2.83441 3.05449 3.42869 3.46237 3.47746 4.07918 4.34280 4.47009 4.50100 4.61228 4.72434 4.81251 4.95587 5.02093 5.03551 5.09637 5.13478 5.16261 5.25390 5.28758 5.33708 5.37984 5.40889 5.48516 5.54631 5.57094 5.64215 5.77917 5.80369 5.86123 5.97929 6.00978 6.08558 6.11522 6.23681 6.32522 6.48691 6.51876 6.61075 7.03636 7.06262 7.21748 7.50444 7.52751 7.84351 7.87034 8.00937 8.29474 9.07463 9.74171 10.60904 11.44682 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015473 B = 0.002093 C = 0.001960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.190252 B =13371.883021 C =14281.653994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.741 5.741 3 C 0.510 3.490 4 O -0.539 6.539 5 C -0.141 4.141 6 C -0.104 4.104 7 C -0.104 4.104 8 C -0.139 4.139 9 C 0.516 3.484 10 O -0.542 6.542 11 N -0.612 5.612 12 C 0.074 3.926 13 C 0.046 3.954 14 O -0.342 6.342 15 C 0.049 3.951 16 C 0.152 3.848 17 N -0.603 5.603 18 C -0.218 4.218 19 H 0.080 0.920 20 C -0.009 4.009 21 N -0.923 5.923 22 Si 0.913 3.087 23 H -0.285 1.285 24 H -0.290 1.290 25 H -0.284 1.284 26 C 0.136 3.864 27 C 0.099 3.901 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.074 0.926 31 H 0.403 0.597 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.095 0.905 39 H 0.092 0.908 40 H 0.091 0.909 41 H 0.075 0.925 42 H 0.101 0.899 43 H 0.060 0.940 44 H 0.033 0.967 45 H 0.075 0.925 46 H 0.253 0.747 47 H 0.055 0.945 48 H 0.050 0.950 49 H 0.067 0.933 50 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.031 -9.241 14.571 24.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.393 5.393 3 C 0.297 3.703 4 O -0.415 6.415 5 C -0.181 4.181 6 C -0.142 4.142 7 C -0.142 4.142 8 C -0.179 4.179 9 C 0.304 3.696 10 O -0.419 6.419 11 N -0.346 5.346 12 C -0.050 4.050 13 C -0.032 4.032 14 O -0.260 6.260 15 C 0.007 3.993 16 C 0.026 3.974 17 N -0.329 5.329 18 C -0.346 4.346 19 H 0.098 0.902 20 C -0.205 4.205 21 N -0.570 5.570 22 Si 0.744 3.256 23 H -0.212 1.212 24 H -0.216 1.216 25 H -0.211 1.211 26 C 0.009 3.991 27 C -0.024 4.024 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.236 0.764 32 H 0.114 0.886 33 H 0.113 0.887 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.088 0.912 38 H 0.113 0.887 39 H 0.110 0.890 40 H 0.109 0.891 41 H 0.093 0.907 42 H 0.119 0.881 43 H 0.079 0.921 44 H 0.051 0.949 45 H 0.094 0.906 46 H 0.063 0.937 47 H 0.074 0.926 48 H 0.067 0.933 49 H 0.086 0.914 50 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -18.008 -8.801 14.232 24.582 hybrid contribution 0.488 -0.376 -0.926 1.112 sum -17.519 -9.177 13.306 23.837 Atomic orbital electron populations 1.21528 0.79801 1.02142 1.02336 1.45883 1.07810 1.08972 1.76647 1.20925 0.90669 0.83431 0.75251 1.90713 1.70677 1.31306 1.48841 1.21698 0.91003 1.00627 1.04748 1.21365 0.94773 0.94456 1.03655 1.21356 0.93954 0.95144 1.03767 1.21684 0.92022 0.99845 1.04344 1.20674 0.90169 0.83046 0.75683 1.90684 1.70433 1.30781 1.50032 1.48194 1.07197 1.05765 1.73406 1.22355 0.97262 0.84769 1.00576 1.22788 0.82960 1.00222 0.97236 1.87930 1.16905 1.27620 1.93538 1.23684 0.94743 0.84746 0.96101 1.22669 0.90556 0.94280 0.89846 1.45771 1.22468 1.65277 0.99395 1.18953 1.02026 1.29999 0.83624 0.90177 1.24775 0.97631 1.00941 0.97166 1.69810 1.19926 1.46511 1.20773 0.86178 0.78937 0.78466 0.82043 1.21202 1.21618 1.21087 1.22490 0.90072 0.99357 0.87151 1.22226 0.78989 1.01992 0.99196 0.92298 0.92240 0.90733 0.76397 0.88561 0.88705 0.91175 0.90994 0.90866 0.91156 0.88695 0.89004 0.89053 0.90718 0.88120 0.92131 0.94931 0.90634 0.93684 0.92638 0.93268 0.91450 0.88096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.46 10.70 59.85 0.64 1.10 16 2 N -0.74 -4.40 5.71 -67.07 -0.38 -4.79 16 3 C 0.51 4.55 7.83 -10.99 -0.09 4.47 16 4 O -0.54 -7.09 15.98 5.56 0.09 -7.00 16 5 C -0.14 -0.96 5.70 -27.88 -0.16 -1.12 16 6 C -0.10 -0.89 4.50 -26.73 -0.12 -1.01 16 7 C -0.10 -1.01 4.50 -26.73 -0.12 -1.14 16 8 C -0.14 -1.44 4.07 -27.88 -0.11 -1.55 16 9 C 0.52 7.59 7.71 -10.99 -0.08 7.50 16 10 O -0.54 -9.88 15.48 5.56 0.09 -9.80 16 11 N -0.61 -8.98 3.03 -172.73 -0.52 -9.50 16 12 C 0.07 0.86 6.47 -3.82 -0.02 0.84 16 13 C 0.05 0.68 6.87 37.04 0.25 0.93 16 14 O -0.34 -6.63 10.52 -35.23 -0.37 -7.00 16 15 C 0.05 0.97 1.21 -90.32 -0.11 0.86 16 16 C 0.15 3.73 6.65 -3.17 -0.02 3.71 16 17 N -0.60 -16.03 3.70 -180.31 -0.67 -16.70 16 18 C -0.22 -6.31 10.70 -15.06 -0.16 -6.47 16 19 H 0.08 2.22 7.83 -52.49 -0.41 1.80 16 20 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 21 N -0.92 -28.03 11.39 55.49 0.63 -27.40 16 22 Si 0.91 22.66 29.55 -169.99 -5.02 17.63 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 25 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 26 C 0.14 2.88 8.34 -3.17 -0.03 2.85 16 27 C 0.10 1.65 5.78 -3.65 -0.02 1.62 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.40 1.17 8.83 -40.82 -0.36 0.81 16 32 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.62 8.10 -51.93 -0.42 0.20 16 35 H 0.07 0.68 8.10 -51.93 -0.42 0.26 16 36 H 0.07 0.80 8.10 -51.93 -0.42 0.38 16 37 H 0.07 0.70 8.10 -51.93 -0.42 0.28 16 38 H 0.09 0.90 7.68 -51.93 -0.40 0.50 16 39 H 0.09 0.75 8.00 -51.93 -0.42 0.34 16 40 H 0.09 0.80 6.03 -51.93 -0.31 0.48 16 41 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 43 H 0.06 1.01 7.19 -51.93 -0.37 0.64 16 44 H 0.03 0.84 7.94 -51.93 -0.41 0.43 16 45 H 0.08 2.06 6.30 -51.93 -0.33 1.73 16 46 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 47 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 48 H 0.05 0.96 8.09 -51.93 -0.42 0.54 16 49 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 50 H 0.10 1.82 6.91 -51.93 -0.36 1.46 16 LS Contribution 402.01 15.07 6.06 6.06 Total: -1.00 -38.15 402.01 -8.77 -46.91 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -8.41 Total: -0.65 kcal Atomic # 6 Polarization: 12.49 SS G_CDS: -0.25 Total: 12.24 kcal Atomic # 7 Polarization: -57.44 SS G_CDS: -0.94 Total: -58.39 kcal Atomic # 8 Polarization: -23.60 SS G_CDS: -0.20 Total: -23.80 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -38.15 -8.77 -46.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570228170.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.165 kcal (2) G-P(sol) polarization free energy of solvation -38.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds