Wall clock time and date at job start Sat Apr 11 2020 05:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34777 * 119.99750 * 2 1 4 4 O 1.21282 * 120.00341 * 359.97438 * 3 2 1 5 5 C 1.50699 * 119.99618 * 179.97438 * 3 2 1 6 6 C 1.53006 * 109.47240 * 179.97438 * 5 3 2 7 7 C 1.52999 * 109.47000 * 180.02562 * 6 5 3 8 8 C 1.53006 * 109.46626 * 180.02562 * 7 6 5 9 9 C 1.50699 * 109.46866 * 179.97438 * 8 7 6 10 10 O 1.21282 * 120.00041 * 359.97438 * 9 8 7 11 11 N 1.34779 * 120.00037 * 180.02562 * 9 8 7 12 12 C 1.47128 * 121.05464 * 359.71534 * 11 9 8 13 13 C 1.52763 * 108.97815 * 232.17287 * 12 11 9 14 14 O 1.43104 * 109.42184 * 306.12006 * 13 12 11 15 15 C 1.42490 * 113.96682 * 59.83116 * 14 13 12 16 16 C 1.53464 * 113.76565 * 73.17376 * 15 14 13 17 17 N 1.47667 * 85.97182 * 91.28390 * 16 15 14 18 18 C 1.36939 * 134.45821 * 204.31552 * 17 16 15 19 19 H 1.07996 * 120.00116 * 179.97438 * 18 17 16 20 20 C 1.38811 * 119.99948 * 359.96615 * 18 17 16 21 21 N 1.31626 * 119.99734 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00323 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46954 * 60.00138 * 22 20 18 24 24 H 1.48502 * 109.47282 * 180.02562 * 22 20 18 25 25 H 1.48493 * 109.47209 * 300.00403 * 22 20 18 26 26 C 1.47673 * 91.08930 * 24.29388 * 17 16 15 27 27 C 1.47342 * 121.05348 * 180.02562 * 11 9 8 28 28 H 1.09004 * 109.47042 * 300.00299 * 1 2 3 29 29 H 1.09000 * 109.47175 * 60.00340 * 1 2 3 30 30 H 1.09002 * 109.47617 * 180.02562 * 1 2 3 31 31 H 0.96996 * 119.99986 * 179.97438 * 2 1 3 32 32 H 1.09004 * 109.47103 * 59.99746 * 5 3 2 33 33 H 1.09000 * 109.47247 * 299.99624 * 5 3 2 34 34 H 1.08993 * 109.46765 * 59.99668 * 6 5 3 35 35 H 1.09000 * 109.46866 * 300.00069 * 6 5 3 36 36 H 1.08993 * 109.47839 * 60.00073 * 7 6 5 37 37 H 1.09000 * 109.47160 * 299.99635 * 7 6 5 38 38 H 1.09000 * 109.47050 * 299.99699 * 8 7 6 39 39 H 1.09001 * 109.46801 * 59.99811 * 8 7 6 40 40 H 1.09003 * 109.59276 * 352.00607 * 12 11 9 41 41 H 1.08999 * 109.59243 * 112.45621 * 12 11 9 42 42 H 1.09007 * 109.56453 * 186.06610 * 13 12 11 43 43 H 1.09002 * 109.36073 * 66.05283 * 13 12 11 44 44 H 1.09004 * 113.79329 * 205.54885 * 16 15 14 45 45 H 1.08997 * 113.79415 * 337.01654 * 16 15 14 46 46 H 0.97000 * 119.99924 * 179.97438 * 21 20 18 47 47 H 1.09003 * 113.79083 * 221.44279 * 26 17 16 48 48 H 1.09001 * 113.90106 * 89.98120 * 26 17 16 49 49 H 1.09002 * 109.74330 * 251.23015 * 27 11 9 50 50 H 1.09002 * 109.75015 * 11.91494 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5324 2.2176 -0.0005 5 6 3.6458 1.1672 0.0006 6 6 4.1559 2.6097 -0.0002 7 6 5.6859 2.6096 -0.0002 8 6 6.1959 4.0522 -0.0004 9 6 7.7029 4.0522 0.0002 10 8 8.3093 3.0018 0.0012 11 7 8.3768 5.2194 0.0007 12 6 7.6648 6.5069 -0.0055 13 6 8.2050 7.3678 -1.1460 14 8 9.6276 7.4722 -1.0307 15 6 10.3061 6.2204 -1.0854 16 6 10.3444 5.5985 -2.4879 17 7 11.6254 6.3134 -2.6565 18 6 12.3369 6.7650 -3.7359 19 1 13.2771 7.2752 -3.5877 20 6 11.8496 6.5668 -5.0205 21 7 10.7035 5.9452 -5.2010 22 14 12.8204 7.1821 -6.4930 23 1 14.1559 6.5329 -6.5117 24 1 12.0898 6.8485 -7.7421 25 1 12.9872 8.6544 -6.3958 26 6 11.8315 6.3469 -1.1946 27 6 9.8500 5.2464 0.0008 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.9500 -0.8400 0.0004 32 1 4.0095 0.6531 -0.8892 33 1 4.0088 0.6536 0.8908 34 1 3.7922 3.1241 0.8892 35 1 3.7929 3.1229 -0.8907 36 1 6.0493 2.0954 -0.8899 37 1 6.0492 2.0963 0.8900 38 1 5.8325 4.5659 -0.8904 39 1 5.8325 4.5661 0.8896 40 1 6.5987 6.3343 -0.1529 41 1 7.8267 7.0187 0.9431 42 1 7.7619 8.3624 -1.0940 43 1 7.9502 6.9055 -2.0997 44 1 10.4437 4.5130 -2.4850 45 1 9.5527 5.9530 -3.1479 46 1 10.3629 5.8070 -6.0986 47 1 12.2214 7.2961 -0.8271 48 1 12.3732 5.4848 -0.8052 49 1 10.2121 5.5828 0.9723 50 1 10.2367 4.2496 -0.2115 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570228170.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:24 Heat of formation + Delta-G solvation = -90.179039 kcal Electronic energy + Delta-G solvation = -29786.348789 eV Core-core repulsion = 25621.361642 eV Total energy + Delta-G solvation = -4164.987148 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.73042 -40.68183 -40.14411 -37.77218 -36.22382 -35.70593 -35.52519 -34.30584 -32.25081 -31.30096 -29.45605 -28.56323 -27.45467 -26.87150 -25.41710 -24.60662 -23.46711 -22.18324 -21.30636 -20.62267 -19.91951 -18.83729 -18.21924 -18.04896 -17.53639 -17.20919 -17.07374 -16.84855 -16.65788 -16.38651 -16.01249 -15.74326 -15.52104 -15.01830 -14.94334 -14.88297 -14.78195 -14.28203 -14.18457 -13.84963 -13.57578 -13.34000 -13.26899 -13.12578 -12.98975 -12.87662 -12.74196 -12.57199 -12.47885 -12.21242 -12.06090 -12.00218 -11.97625 -11.72020 -11.48309 -11.43330 -10.97350 -10.92910 -10.80071 -10.71129 -10.10877 -9.51342 -8.96100 -7.92375 -5.26919 1.42384 1.47100 1.52912 1.62951 1.66524 1.91723 2.35850 2.44663 2.65633 3.25027 3.33133 3.49911 3.63771 3.79281 3.86204 3.89206 4.02290 4.05703 4.18622 4.32249 4.39220 4.41702 4.44139 4.52584 4.61355 4.61595 4.62296 4.65158 4.70155 4.80177 4.80876 4.84265 4.87483 4.93558 4.96232 4.96804 5.09284 5.11448 5.22606 5.34540 5.35655 5.44066 5.45886 5.53406 5.87241 6.33588 6.40453 6.57683 6.86917 7.15822 7.29555 7.56798 8.50267 9.24082 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015473 B = 0.002093 C = 0.001960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.190252 B =13371.883021 C =14281.653994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.729 5.729 3 C 0.505 3.495 4 O -0.589 6.589 5 C -0.137 4.137 6 C -0.097 4.097 7 C -0.097 4.097 8 C -0.134 4.134 9 C 0.509 3.491 10 O -0.585 6.585 11 N -0.617 5.617 12 C 0.079 3.921 13 C 0.037 3.963 14 O -0.364 6.364 15 C 0.078 3.922 16 C 0.152 3.848 17 N -0.635 5.635 18 C -0.234 4.234 19 H 0.087 0.913 20 C -0.071 4.071 21 N -0.957 5.957 22 Si 0.984 3.016 23 H -0.276 1.276 24 H -0.294 1.294 25 H -0.274 1.274 26 C 0.133 3.867 27 C 0.108 3.892 28 H 0.048 0.952 29 H 0.045 0.955 30 H 0.108 0.892 31 H 0.419 0.581 32 H 0.109 0.891 33 H 0.117 0.883 34 H 0.070 0.930 35 H 0.059 0.941 36 H 0.055 0.945 37 H 0.069 0.931 38 H 0.106 0.894 39 H 0.124 0.876 40 H 0.127 0.873 41 H 0.102 0.898 42 H 0.133 0.867 43 H 0.031 0.969 44 H 0.009 0.991 45 H 0.040 0.960 46 H 0.247 0.753 47 H 0.066 0.934 48 H 0.071 0.929 49 H 0.097 0.903 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.784 -9.038 16.373 26.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.381 5.381 3 C 0.293 3.707 4 O -0.469 6.469 5 C -0.177 4.177 6 C -0.135 4.135 7 C -0.135 4.135 8 C -0.173 4.173 9 C 0.299 3.701 10 O -0.465 6.465 11 N -0.350 5.350 12 C -0.043 4.043 13 C -0.039 4.039 14 O -0.282 6.282 15 C 0.036 3.964 16 C 0.027 3.973 17 N -0.361 5.361 18 C -0.362 4.362 19 H 0.104 0.896 20 C -0.264 4.264 21 N -0.606 5.606 22 Si 0.811 3.189 23 H -0.202 1.202 24 H -0.220 1.220 25 H -0.200 1.200 26 C 0.008 3.992 27 C -0.016 4.016 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.127 0.873 31 H 0.256 0.744 32 H 0.127 0.873 33 H 0.135 0.865 34 H 0.088 0.912 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.088 0.912 38 H 0.124 0.876 39 H 0.142 0.858 40 H 0.145 0.855 41 H 0.120 0.880 42 H 0.151 0.849 43 H 0.049 0.951 44 H 0.026 0.974 45 H 0.058 0.942 46 H 0.056 0.944 47 H 0.084 0.916 48 H 0.088 0.912 49 H 0.115 0.885 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -18.761 -8.618 16.076 26.166 hybrid contribution 0.697 -0.455 -1.470 1.689 sum -18.064 -9.073 14.606 24.939 Atomic orbital electron populations 1.21636 0.79355 1.04026 1.01187 1.45845 1.08269 1.09021 1.74978 1.21291 0.91475 0.83412 0.74539 1.90690 1.71682 1.33094 1.51461 1.21705 0.89618 0.99939 1.06427 1.21247 0.93600 0.95582 1.03049 1.21272 0.94614 0.94730 1.02902 1.21771 0.88478 1.00757 1.06309 1.21487 0.91870 0.82284 0.74414 1.90663 1.71613 1.32300 1.51905 1.48355 1.06443 1.07124 1.73098 1.22545 0.98642 0.82808 1.00281 1.23104 0.80792 1.02684 0.97360 1.87882 1.19535 1.27291 1.93490 1.23172 0.94127 0.85201 0.93887 1.22504 0.89141 0.92859 0.92843 1.46173 1.23229 1.65424 1.01272 1.19409 1.02336 1.29597 0.84840 0.89554 1.25700 0.98819 1.01742 1.00114 1.70031 1.21632 1.48142 1.20764 0.85077 0.77587 0.78246 0.77967 1.20170 1.22034 1.20017 1.22724 0.91739 1.00592 0.84138 1.21965 0.80810 0.99842 0.99023 0.93301 0.93592 0.87330 0.74442 0.87276 0.86513 0.91165 0.92206 0.92613 0.91186 0.87607 0.85792 0.85476 0.87956 0.84913 0.95063 0.97351 0.94180 0.94382 0.91560 0.91170 0.88523 0.90033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.78 10.70 127.77 1.37 2.14 16 2 N -0.73 -7.53 5.71 -484.51 -2.77 -10.30 16 3 C 0.50 8.52 7.83 87.66 0.69 9.21 16 4 O -0.59 -15.47 15.98 -3.04 -0.05 -15.52 16 5 C -0.14 -1.66 5.70 29.85 0.17 -1.49 16 6 C -0.10 -1.52 4.50 30.60 0.14 -1.38 16 7 C -0.10 -1.77 4.50 30.60 0.14 -1.63 16 8 C -0.13 -2.47 4.07 29.85 0.12 -2.35 16 9 C 0.51 14.41 7.71 87.66 0.68 15.08 16 10 O -0.58 -21.43 15.48 -3.04 -0.05 -21.48 16 11 N -0.62 -17.08 3.03 -818.78 -2.48 -19.56 16 12 C 0.08 1.60 6.47 86.18 0.56 2.16 16 13 C 0.04 1.05 6.87 71.90 0.49 1.55 16 14 O -0.36 -13.77 10.52 -148.98 -1.57 -15.34 16 15 C 0.08 3.08 1.21 -10.50 -0.01 3.06 16 16 C 0.15 7.82 6.65 86.31 0.57 8.40 16 17 N -0.63 -34.57 3.70 -729.26 -2.70 -37.27 16 18 C -0.23 -13.75 10.70 84.03 0.90 -12.85 16 19 H 0.09 4.80 7.83 -2.91 -0.02 4.78 16 20 C -0.07 -4.24 5.50 84.86 0.47 -3.78 16 21 N -0.96 -60.41 11.39 21.65 0.25 -60.16 16 22 Si 0.98 47.41 29.55 68.60 2.03 49.44 16 23 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 24 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 25 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 26 C 0.13 5.61 8.34 86.30 0.72 6.32 16 27 C 0.11 3.46 5.78 86.17 0.50 3.96 16 28 H 0.05 0.58 8.14 -2.38 -0.02 0.56 16 29 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.11 0.26 8.14 -2.39 -0.02 0.24 16 31 H 0.42 1.47 8.83 -92.71 -0.82 0.65 16 32 H 0.11 1.05 8.14 -2.38 -0.02 1.04 16 33 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.07 1.12 8.10 -2.39 -0.02 1.10 16 35 H 0.06 1.09 8.10 -2.39 -0.02 1.07 16 36 H 0.06 1.21 8.10 -2.39 -0.02 1.19 16 37 H 0.07 1.29 8.10 -2.39 -0.02 1.27 16 38 H 0.11 1.77 7.68 -2.39 -0.02 1.75 16 39 H 0.12 1.54 8.00 -2.39 -0.02 1.52 16 40 H 0.13 1.69 6.03 -2.39 -0.01 1.67 16 41 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.13 2.84 8.14 -2.38 -0.02 2.82 16 43 H 0.03 1.06 7.19 -2.39 -0.02 1.04 16 44 H 0.01 0.48 7.94 -2.38 -0.02 0.46 16 45 H 0.04 2.31 6.30 -2.39 -0.02 2.30 16 46 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 47 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 48 H 0.07 2.68 8.09 -2.39 -0.02 2.66 16 49 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 50 H 0.08 2.97 6.91 -2.39 -0.02 2.96 16 Total: -1.00 -87.83 402.01 0.27 -87.56 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: 0.12 Total: 14.22 kcal Atomic # 6 Polarization: 20.91 SS G_CDS: 7.49 Total: 28.40 kcal Atomic # 7 Polarization: -119.58 SS G_CDS: -7.70 Total: -127.29 kcal Atomic # 8 Polarization: -50.67 SS G_CDS: -1.66 Total: -52.33 kcal Atomic # 14 Polarization: 47.41 SS G_CDS: 2.03 Total: 49.44 kcal Total: -87.83 0.27 -87.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570228170.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.621 kcal (2) G-P(sol) polarization free energy of solvation -87.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds