Wall clock time and date at job start Sat Apr 11 2020 05:49:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.34770 * 119.99979 * 2 1 4 4 O 1.21283 * 120.00193 * 0.02562 * 3 2 1 5 5 C 1.50705 * 119.99960 * 180.02562 * 3 2 1 6 6 C 1.53004 * 109.46757 * 180.02562 * 5 3 2 7 7 C 1.53005 * 109.46822 * 180.02562 * 6 5 3 8 8 C 1.50690 * 109.47189 * 180.02562 * 7 6 5 9 9 O 1.21283 * 120.00389 * 359.97438 * 8 7 6 10 10 N 1.34780 * 120.00109 * 179.97438 * 8 7 6 11 11 C 1.46497 * 120.00062 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.47303 * 180.02562 * 11 10 8 13 13 H 1.09004 * 110.26821 * 304.39146 * 12 11 10 14 14 C 1.55012 * 110.38950 * 182.26176 * 12 11 10 15 15 C 1.55485 * 101.04621 * 205.00629 * 14 12 11 16 16 C 1.53657 * 101.96929 * 33.48733 * 15 14 12 17 17 C 1.52701 * 115.26431 * 206.89726 * 16 15 14 18 18 N 1.47219 * 87.79365 * 219.25468 * 17 16 15 19 19 C 1.36937 * 135.96887 * 206.43839 * 18 17 16 20 20 H 1.07994 * 120.00411 * 6.77260 * 19 18 17 21 21 C 1.38819 * 119.99468 * 186.77646 * 19 18 17 22 22 N 1.31615 * 119.99475 * 172.32103 * 21 19 18 23 23 Si 1.86795 * 120.00070 * 352.32330 * 21 19 18 24 24 H 1.48504 * 109.47044 * 175.35610 * 23 21 19 25 25 H 1.48501 * 109.47100 * 55.35858 * 23 21 19 26 26 H 1.48499 * 109.47390 * 295.35468 * 23 21 19 27 27 C 1.47207 * 88.05480 * 26.69372 * 18 17 16 28 28 O 1.42389 * 108.53058 * 339.13150 * 16 15 14 29 29 H 1.08991 * 109.47111 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.46692 * 299.99800 * 1 2 3 31 31 H 1.08998 * 109.46897 * 59.99897 * 1 2 3 32 32 H 0.96999 * 119.99893 * 180.02562 * 2 1 3 33 33 H 1.08994 * 109.46742 * 60.00170 * 5 3 2 34 34 H 1.08998 * 109.46864 * 300.00062 * 5 3 2 35 35 H 1.08994 * 109.47501 * 60.00456 * 6 5 3 36 36 H 1.08998 * 109.47338 * 299.99593 * 6 5 3 37 37 H 1.09000 * 109.47374 * 59.99435 * 7 6 5 38 38 H 1.09007 * 109.47143 * 300.00176 * 7 6 5 39 39 H 0.97000 * 119.99649 * 0.02562 * 10 8 7 40 40 H 1.09003 * 109.47069 * 60.00457 * 11 10 8 41 41 H 1.08997 * 109.47509 * 300.00509 * 11 10 8 42 42 H 1.09005 * 111.10117 * 322.95036 * 14 12 11 43 43 H 1.09003 * 111.10390 * 87.01516 * 14 12 11 44 44 H 1.09001 * 110.93104 * 275.31651 * 15 14 12 45 45 H 1.09006 * 110.92783 * 151.65883 * 15 14 12 46 46 H 1.09003 * 113.49814 * 104.52364 * 17 16 15 47 47 H 1.08994 * 113.55843 * 333.99030 * 17 16 15 48 48 H 0.96993 * 120.00496 * 4.91101 * 22 21 19 49 49 H 1.09002 * 113.49973 * 88.03752 * 27 18 17 50 50 H 1.09003 * 113.50163 * 218.58128 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5325 2.2175 0.0005 5 6 3.6460 1.1671 -0.0006 6 6 4.1559 2.6097 0.0002 7 6 5.6860 2.6097 -0.0011 8 6 6.1883 4.0304 0.0003 9 8 5.4002 4.9523 0.0017 10 7 7.5134 4.2767 0.0001 11 6 8.0017 5.6579 0.0009 12 6 9.5317 5.6580 -0.0002 13 1 9.9099 5.0797 0.8428 14 6 10.0717 7.1098 0.0579 15 6 11.4714 6.9334 -0.5958 16 6 11.2044 5.8255 -1.6265 17 6 12.4148 4.9688 -1.9907 18 7 11.9352 4.9839 -3.3825 19 6 12.0538 4.1651 -4.4737 20 1 12.5281 3.1999 -4.3755 21 6 11.5644 4.5759 -5.7061 22 7 11.8101 3.8607 -6.7832 23 14 10.5572 6.1437 -5.8355 24 1 10.2515 6.4193 -7.2624 25 1 11.3304 7.2771 -5.2672 26 1 9.2891 5.9813 -5.0801 27 6 11.2777 6.2679 -3.0891 28 8 10.0301 5.1199 -1.2384 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.9501 -0.8400 -0.0004 33 1 4.0089 0.6536 -0.8908 34 1 4.0096 0.6531 0.8891 35 1 3.7930 3.1229 0.8906 36 1 3.7923 3.1241 -0.8893 37 1 6.0486 2.0965 -0.8917 38 1 6.0500 2.0951 0.8883 39 1 8.1437 3.5394 -0.0013 40 1 7.6387 6.1711 0.8914 41 1 7.6380 6.1724 -0.8885 42 1 9.4472 7.7846 -0.5276 43 1 10.1596 7.4549 1.0881 44 1 12.2073 6.6110 0.1407 45 1 11.7907 7.8530 -1.0864 46 1 12.3987 3.9782 -1.5362 47 1 13.3675 5.4802 -1.8539 48 1 12.2714 3.0109 -6.7064 49 1 11.9216 7.1326 -3.2498 50 1 10.3014 6.3744 -3.5620 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570232282.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:37 Heat of formation + Delta-G solvation = -63.386289 kcal Electronic energy + Delta-G solvation = -29291.164931 eV Core-core repulsion = 25127.339605 eV Total energy + Delta-G solvation = -4163.825327 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -40.34356 -40.02914 -39.46477 -36.93563 -35.04757 -34.62927 -34.31166 -32.35567 -32.07194 -30.21121 -29.05442 -27.22619 -26.35497 -25.49025 -23.94193 -22.41175 -21.54372 -21.07385 -20.64884 -20.18503 -19.30946 -17.82698 -17.49530 -16.86201 -16.77611 -16.40554 -16.16255 -15.87735 -15.74211 -15.45426 -14.55168 -14.42667 -14.16940 -13.91565 -13.86654 -13.65100 -13.36032 -13.18525 -13.16473 -12.94163 -12.73089 -12.55181 -12.29372 -12.20890 -11.98321 -11.68421 -11.67640 -11.61544 -11.29100 -10.98042 -10.83147 -10.65481 -10.46093 -10.26910 -10.21821 -9.81386 -9.63656 -9.51093 -9.17433 -9.06681 -8.82027 -8.76299 -7.10767 -6.27844 -3.17438 2.35229 2.65255 2.81704 3.17699 3.43717 3.50724 3.68487 3.77095 4.35916 4.46210 4.55581 4.63573 4.69032 4.73002 4.78198 4.78694 4.84944 4.88245 4.96301 5.08163 5.11116 5.15004 5.21759 5.29582 5.35333 5.40529 5.44761 5.46748 5.52135 5.59789 5.71668 5.89731 5.92579 5.94101 5.98547 6.06931 6.18469 6.20149 6.22789 6.32478 6.40086 6.42159 6.49540 7.08585 7.14151 7.46075 7.49044 7.90593 8.23019 8.26850 9.01588 9.54366 10.40270 11.25149 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011553 B = 0.002269 C = 0.002019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2423.088335 B =12337.402347 C =13861.809459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.741 5.741 3 C 0.509 3.491 4 O -0.533 6.533 5 C -0.141 4.141 6 C -0.089 4.089 7 C -0.142 4.142 8 C 0.511 3.489 9 O -0.542 6.542 10 N -0.724 5.724 11 C 0.123 3.877 12 C 0.063 3.937 13 H 0.075 0.925 14 C -0.146 4.146 15 C -0.137 4.137 16 C 0.069 3.931 17 C 0.117 3.883 18 N -0.621 5.621 19 C -0.299 4.299 20 H 0.082 0.918 21 C -0.026 4.026 22 N -0.936 5.936 23 Si 1.071 2.929 24 H -0.296 1.296 25 H -0.288 1.288 26 H -0.292 1.292 27 C 0.095 3.905 28 O -0.333 6.333 29 H 0.074 0.926 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.402 0.598 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.097 0.903 38 H 0.093 0.907 39 H 0.405 0.595 40 H 0.078 0.922 41 H 0.075 0.925 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.079 0.921 45 H 0.085 0.915 46 H 0.049 0.951 47 H 0.048 0.952 48 H 0.260 0.740 49 H 0.055 0.945 50 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.967 -5.209 20.993 25.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.394 5.394 3 C 0.296 3.704 4 O -0.409 6.409 5 C -0.181 4.181 6 C -0.127 4.127 7 C -0.182 4.182 8 C 0.298 3.702 9 O -0.420 6.420 10 N -0.376 5.376 11 C -0.001 4.001 12 C 0.005 3.995 13 H 0.093 0.907 14 C -0.184 4.184 15 C -0.176 4.176 16 C 0.028 3.972 17 C -0.009 4.009 18 N -0.349 5.349 19 C -0.425 4.425 20 H 0.100 0.900 21 C -0.224 4.224 22 N -0.579 5.579 23 Si 0.903 3.097 24 H -0.223 1.223 25 H -0.215 1.215 26 H -0.220 1.220 27 C -0.031 4.031 28 O -0.251 6.251 29 H 0.093 0.907 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.235 0.765 33 H 0.115 0.885 34 H 0.113 0.887 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.115 0.885 38 H 0.111 0.889 39 H 0.240 0.760 40 H 0.096 0.904 41 H 0.093 0.907 42 H 0.101 0.899 43 H 0.101 0.899 44 H 0.097 0.903 45 H 0.104 0.896 46 H 0.068 0.932 47 H 0.066 0.934 48 H 0.070 0.930 49 H 0.072 0.928 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -14.816 -3.110 19.562 24.736 hybrid contribution 1.517 -1.809 1.124 2.615 sum -13.299 -4.918 20.686 25.079 Atomic orbital electron populations 1.21528 0.79762 1.02117 1.02394 1.45869 1.07816 1.08874 1.76814 1.20836 0.90554 0.83488 0.75524 1.90748 1.70555 1.31252 1.48350 1.21710 0.91528 1.00310 1.04600 1.21068 0.92357 0.94104 1.05214 1.21683 0.97552 0.94302 1.04645 1.20643 0.82065 0.91701 0.75805 1.90720 1.55282 1.46539 1.49409 1.45933 1.07194 1.09070 1.75437 1.21523 0.92081 0.83630 1.02868 1.23305 0.92889 0.94588 0.88761 0.90673 1.23225 0.97004 0.96201 1.02011 1.22909 0.96902 0.99563 0.98226 1.23206 0.87344 0.92043 0.94581 1.22628 0.93784 0.97909 0.86618 1.45837 1.59936 1.20232 1.08914 1.20092 1.37890 0.98468 0.86048 0.90037 1.25702 1.00717 1.05700 0.90306 1.70925 1.44664 1.14740 1.27552 0.83692 0.76134 0.75350 0.74476 1.22325 1.21532 1.22003 1.23101 0.97434 0.91025 0.91551 1.88434 1.41580 1.57187 1.37910 0.90730 0.92280 0.92217 0.76464 0.88514 0.88723 0.90443 0.90264 0.88456 0.88861 0.76013 0.90383 0.90650 0.89927 0.89890 0.90251 0.89625 0.93236 0.93429 0.93031 0.92754 0.92542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.50 10.70 59.85 0.64 1.14 16 2 N -0.74 -4.68 5.71 -67.08 -0.38 -5.06 16 3 C 0.51 4.90 7.83 -10.99 -0.09 4.82 16 4 O -0.53 -7.76 15.98 5.56 0.09 -7.68 16 5 C -0.14 -0.97 5.70 -27.88 -0.16 -1.13 16 6 C -0.09 -0.91 3.79 -26.73 -0.10 -1.01 16 7 C -0.14 -1.26 5.70 -27.89 -0.16 -1.42 16 8 C 0.51 6.66 7.83 -10.99 -0.09 6.57 16 9 O -0.54 -9.29 15.98 5.56 0.09 -9.20 16 10 N -0.72 -8.69 5.54 -60.30 -0.33 -9.03 16 11 C 0.12 1.53 5.39 -4.04 -0.02 1.51 16 12 C 0.06 0.76 3.48 -25.67 -0.09 0.67 16 13 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 14 C -0.15 -1.54 6.58 -24.35 -0.16 -1.70 16 15 C -0.14 -1.68 6.39 -25.07 -0.16 -1.84 16 16 C 0.07 1.21 1.75 -90.44 -0.16 1.05 16 17 C 0.12 2.31 8.20 -8.06 -0.07 2.25 16 18 N -0.62 -15.70 3.70 -184.58 -0.68 -16.38 16 19 C -0.30 -8.85 11.08 -15.06 -0.17 -9.02 16 20 H 0.08 2.53 8.05 -52.49 -0.42 2.10 16 21 C -0.03 -0.79 5.50 -17.43 -0.10 -0.89 16 22 N -0.94 -30.20 13.70 55.49 0.76 -29.44 16 23 Si 1.07 27.92 25.13 -169.99 -4.27 23.64 16 24 H -0.30 -7.80 7.11 56.52 0.40 -7.40 16 25 H -0.29 -6.89 6.11 56.52 0.35 -6.55 16 26 H -0.29 -7.43 6.64 56.52 0.38 -7.06 16 27 C 0.09 2.05 5.18 -7.92 -0.04 2.00 16 28 O -0.33 -5.77 10.84 -35.23 -0.38 -6.16 16 29 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.40 1.20 8.83 -40.82 -0.36 0.84 16 33 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.08 0.93 8.06 -51.93 -0.42 0.51 16 36 H 0.08 1.03 8.06 -51.93 -0.42 0.61 16 37 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.41 4.18 8.47 -40.82 -0.35 3.84 16 40 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 41 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.08 0.89 8.05 -51.93 -0.42 0.47 16 43 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.08 0.83 8.13 -51.93 -0.42 0.41 16 45 H 0.09 0.98 7.81 -51.93 -0.41 0.58 16 46 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 47 H 0.05 0.86 8.13 -51.93 -0.42 0.44 16 48 H 0.26 8.24 8.73 -40.82 -0.36 7.89 16 49 H 0.06 1.11 7.50 -51.93 -0.39 0.72 16 50 H 0.06 1.32 4.70 -51.93 -0.24 1.07 16 LS Contribution 403.77 15.07 6.08 6.08 Total: -1.00 -40.68 403.77 -8.52 -49.20 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -8.57 Total: 1.02 kcal Atomic # 6 Polarization: 3.91 SS G_CDS: -0.91 Total: 3.00 kcal Atomic # 7 Polarization: -59.27 SS G_CDS: -0.64 Total: -59.91 kcal Atomic # 8 Polarization: -22.83 SS G_CDS: -0.20 Total: -23.03 kcal Atomic # 14 Polarization: 27.92 SS G_CDS: -4.27 Total: 23.64 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -40.68 -8.52 -49.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570232282.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.189 kcal (2) G-P(sol) polarization free energy of solvation -40.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds