Wall clock time and date at job start Sat Apr 11 2020 05:49:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.34770 * 119.99979 * 2 1 4 4 O 1.21283 * 120.00193 * 0.02562 * 3 2 1 5 5 C 1.50705 * 119.99960 * 180.02562 * 3 2 1 6 6 C 1.53004 * 109.46757 * 180.02562 * 5 3 2 7 7 C 1.53005 * 109.46822 * 180.02562 * 6 5 3 8 8 C 1.50690 * 109.47189 * 180.02562 * 7 6 5 9 9 O 1.21283 * 120.00389 * 359.97438 * 8 7 6 10 10 N 1.34780 * 120.00109 * 179.97438 * 8 7 6 11 11 C 1.46497 * 120.00062 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.47303 * 180.02562 * 11 10 8 13 13 H 1.09004 * 110.26821 * 304.39146 * 12 11 10 14 14 C 1.55012 * 110.38950 * 182.26176 * 12 11 10 15 15 C 1.55485 * 101.04621 * 205.00629 * 14 12 11 16 16 C 1.53657 * 101.96929 * 33.48733 * 15 14 12 17 17 C 1.52701 * 115.26431 * 206.89726 * 16 15 14 18 18 N 1.47219 * 87.79365 * 219.25468 * 17 16 15 19 19 C 1.36937 * 135.96887 * 206.43839 * 18 17 16 20 20 H 1.07994 * 120.00411 * 6.77260 * 19 18 17 21 21 C 1.38819 * 119.99468 * 186.77646 * 19 18 17 22 22 N 1.31615 * 119.99475 * 172.32103 * 21 19 18 23 23 Si 1.86795 * 120.00070 * 352.32330 * 21 19 18 24 24 H 1.48504 * 109.47044 * 175.35610 * 23 21 19 25 25 H 1.48501 * 109.47100 * 55.35858 * 23 21 19 26 26 H 1.48499 * 109.47390 * 295.35468 * 23 21 19 27 27 C 1.47207 * 88.05480 * 26.69372 * 18 17 16 28 28 O 1.42389 * 108.53058 * 339.13150 * 16 15 14 29 29 H 1.08991 * 109.47111 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.46692 * 299.99800 * 1 2 3 31 31 H 1.08998 * 109.46897 * 59.99897 * 1 2 3 32 32 H 0.96999 * 119.99893 * 180.02562 * 2 1 3 33 33 H 1.08994 * 109.46742 * 60.00170 * 5 3 2 34 34 H 1.08998 * 109.46864 * 300.00062 * 5 3 2 35 35 H 1.08994 * 109.47501 * 60.00456 * 6 5 3 36 36 H 1.08998 * 109.47338 * 299.99593 * 6 5 3 37 37 H 1.09000 * 109.47374 * 59.99435 * 7 6 5 38 38 H 1.09007 * 109.47143 * 300.00176 * 7 6 5 39 39 H 0.97000 * 119.99649 * 0.02562 * 10 8 7 40 40 H 1.09003 * 109.47069 * 60.00457 * 11 10 8 41 41 H 1.08997 * 109.47509 * 300.00509 * 11 10 8 42 42 H 1.09005 * 111.10117 * 322.95036 * 14 12 11 43 43 H 1.09003 * 111.10390 * 87.01516 * 14 12 11 44 44 H 1.09001 * 110.93104 * 275.31651 * 15 14 12 45 45 H 1.09006 * 110.92783 * 151.65883 * 15 14 12 46 46 H 1.09003 * 113.49814 * 104.52364 * 17 16 15 47 47 H 1.08994 * 113.55843 * 333.99030 * 17 16 15 48 48 H 0.96993 * 120.00496 * 4.91101 * 22 21 19 49 49 H 1.09002 * 113.49973 * 88.03752 * 27 18 17 50 50 H 1.09003 * 113.50163 * 218.58128 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5325 2.2175 0.0005 5 6 3.6460 1.1671 -0.0006 6 6 4.1559 2.6097 0.0002 7 6 5.6860 2.6097 -0.0011 8 6 6.1883 4.0304 0.0003 9 8 5.4002 4.9523 0.0017 10 7 7.5134 4.2767 0.0001 11 6 8.0017 5.6579 0.0009 12 6 9.5317 5.6580 -0.0002 13 1 9.9099 5.0797 0.8428 14 6 10.0717 7.1098 0.0579 15 6 11.4714 6.9334 -0.5958 16 6 11.2044 5.8255 -1.6265 17 6 12.4148 4.9688 -1.9907 18 7 11.9352 4.9839 -3.3825 19 6 12.0538 4.1651 -4.4737 20 1 12.5281 3.1999 -4.3755 21 6 11.5644 4.5759 -5.7061 22 7 11.8101 3.8607 -6.7832 23 14 10.5572 6.1437 -5.8355 24 1 10.2515 6.4193 -7.2624 25 1 11.3304 7.2771 -5.2672 26 1 9.2891 5.9813 -5.0801 27 6 11.2777 6.2679 -3.0891 28 8 10.0301 5.1199 -1.2384 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.9501 -0.8400 -0.0004 33 1 4.0089 0.6536 -0.8908 34 1 4.0096 0.6531 0.8891 35 1 3.7930 3.1229 0.8906 36 1 3.7923 3.1241 -0.8893 37 1 6.0486 2.0965 -0.8917 38 1 6.0500 2.0951 0.8883 39 1 8.1437 3.5394 -0.0013 40 1 7.6387 6.1711 0.8914 41 1 7.6380 6.1724 -0.8885 42 1 9.4472 7.7846 -0.5276 43 1 10.1596 7.4549 1.0881 44 1 12.2073 6.6110 0.1407 45 1 11.7907 7.8530 -1.0864 46 1 12.3987 3.9782 -1.5362 47 1 13.3675 5.4802 -1.8539 48 1 12.2714 3.0109 -6.7064 49 1 11.9216 7.1326 -3.2498 50 1 10.3014 6.3744 -3.5620 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570232282.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:35 Heat of formation + Delta-G solvation = -98.221027 kcal Electronic energy + Delta-G solvation = -29292.675479 eV Core-core repulsion = 25127.339605 eV Total energy + Delta-G solvation = -4165.335874 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.93 seconds Orbital eigenvalues (eV) -41.59057 -40.88954 -40.45955 -38.35931 -35.79193 -35.62073 -35.21141 -34.48522 -33.15099 -31.31169 -30.10086 -28.62144 -27.16491 -27.10992 -25.14012 -23.36104 -22.62836 -22.53347 -21.35317 -21.12979 -20.78830 -19.58058 -18.59883 -17.91203 -17.74253 -17.35906 -17.15204 -16.93928 -16.74011 -16.34759 -16.06944 -15.65977 -15.42524 -15.21585 -15.05754 -14.97071 -14.66578 -14.42506 -14.26854 -13.96689 -13.64152 -13.39505 -13.28059 -13.22911 -12.94234 -12.74960 -12.67418 -12.58265 -12.49094 -12.43836 -12.18355 -11.93881 -11.74362 -11.69005 -11.31269 -11.19487 -11.07228 -11.00950 -10.81612 -10.23320 -10.14188 -10.10133 -9.19342 -8.66092 -5.45633 1.33032 1.43956 1.62495 1.63693 1.65918 2.12970 2.40067 2.49232 2.63225 2.99413 3.21706 3.48395 3.62605 3.68776 3.75194 3.87562 3.91659 4.05162 4.07517 4.15573 4.38249 4.43610 4.46457 4.51819 4.55622 4.58080 4.62493 4.63241 4.66956 4.70012 4.74969 4.79187 4.84588 4.92732 4.93304 4.96428 5.04109 5.13039 5.15353 5.21546 5.30348 5.33243 5.44156 5.48789 5.93936 6.25798 6.55331 6.56809 6.69681 7.26540 7.29224 7.32282 8.27874 8.89989 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011553 B = 0.002269 C = 0.002019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2423.088335 B =12337.402347 C =13861.809459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.725 5.725 3 C 0.499 3.501 4 O -0.596 6.596 5 C -0.131 4.131 6 C -0.086 4.086 7 C -0.131 4.131 8 C 0.502 3.498 9 O -0.593 6.593 10 N -0.719 5.719 11 C 0.122 3.878 12 C 0.062 3.938 13 H 0.104 0.896 14 C -0.139 4.139 15 C -0.127 4.127 16 C 0.088 3.912 17 C 0.114 3.886 18 N -0.659 5.659 19 C -0.282 4.282 20 H 0.051 0.949 21 C -0.088 4.088 22 N -0.973 5.973 23 Si 1.110 2.890 24 H -0.305 1.305 25 H -0.253 1.253 26 H -0.290 1.290 27 C 0.080 3.920 28 O -0.366 6.366 29 H 0.112 0.888 30 H 0.047 0.953 31 H 0.042 0.958 32 H 0.421 0.579 33 H 0.122 0.878 34 H 0.133 0.867 35 H 0.052 0.948 36 H 0.039 0.961 37 H 0.114 0.886 38 H 0.134 0.866 39 H 0.415 0.585 40 H 0.094 0.906 41 H 0.044 0.956 42 H 0.076 0.924 43 H 0.121 0.879 44 H 0.108 0.892 45 H 0.098 0.902 46 H 0.046 0.954 47 H 0.075 0.925 48 H 0.246 0.754 49 H 0.074 0.926 50 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.131 -5.249 24.337 27.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.378 5.378 3 C 0.288 3.712 4 O -0.476 6.476 5 C -0.170 4.170 6 C -0.125 4.125 7 C -0.171 4.171 8 C 0.290 3.710 9 O -0.474 6.474 10 N -0.371 5.371 11 C -0.002 4.002 12 C 0.005 3.995 13 H 0.122 0.878 14 C -0.177 4.177 15 C -0.165 4.165 16 C 0.047 3.953 17 C -0.011 4.011 18 N -0.387 5.387 19 C -0.410 4.410 20 H 0.069 0.931 21 C -0.279 4.279 22 N -0.619 5.619 23 Si 0.938 3.062 24 H -0.233 1.233 25 H -0.178 1.178 26 H -0.218 1.218 27 C -0.044 4.044 28 O -0.286 6.286 29 H 0.130 0.870 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.259 0.741 33 H 0.140 0.860 34 H 0.151 0.849 35 H 0.070 0.930 36 H 0.058 0.942 37 H 0.132 0.868 38 H 0.152 0.848 39 H 0.251 0.749 40 H 0.112 0.888 41 H 0.062 0.938 42 H 0.095 0.905 43 H 0.139 0.861 44 H 0.126 0.874 45 H 0.116 0.884 46 H 0.064 0.936 47 H 0.093 0.907 48 H 0.055 0.945 49 H 0.091 0.909 50 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -13.926 -3.204 22.982 27.063 hybrid contribution 1.251 -1.905 0.195 2.287 sum -12.675 -5.109 23.177 26.906 Atomic orbital electron populations 1.21635 0.79506 1.04107 1.01034 1.45794 1.08168 1.08908 1.74934 1.21423 0.91856 0.83362 0.74595 1.90726 1.71874 1.33551 1.51488 1.21702 0.89397 0.98332 1.07576 1.20943 0.93481 0.95928 1.02111 1.21715 0.96184 0.91902 1.07285 1.21440 0.81938 0.92985 0.74607 1.90700 1.56493 1.48406 1.51793 1.45967 1.07193 1.09365 1.74573 1.21521 0.92692 0.83821 1.02134 1.23570 0.92136 0.96278 0.87512 0.87826 1.23274 0.95548 0.94764 1.04105 1.22923 0.98547 0.97849 0.97231 1.22877 0.86257 0.92585 0.93557 1.22919 0.96075 0.98787 0.83310 1.45994 1.61510 1.21458 1.09771 1.19980 1.35246 0.97947 0.87799 0.93129 1.26917 1.02254 1.08351 0.90401 1.71015 1.47042 1.15034 1.28838 0.83204 0.75369 0.73652 0.74015 1.23290 1.17830 1.21797 1.23413 0.96277 0.89974 0.94771 1.88403 1.41717 1.58063 1.40385 0.86991 0.93470 0.93878 0.74148 0.85965 0.84914 0.92951 0.94247 0.86757 0.84815 0.74868 0.88775 0.93782 0.90478 0.86069 0.87406 0.88373 0.93572 0.90733 0.94461 0.90870 0.94562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.89 10.70 127.77 1.37 2.25 16 2 N -0.73 -8.05 5.71 -484.52 -2.77 -10.82 16 3 C 0.50 9.43 7.83 87.66 0.69 10.11 16 4 O -0.60 -18.39 15.98 -3.04 -0.05 -18.44 16 5 C -0.13 -1.53 5.70 29.85 0.17 -1.36 16 6 C -0.09 -1.76 3.79 30.60 0.12 -1.65 16 7 C -0.13 -2.09 5.70 29.85 0.17 -1.92 16 8 C 0.50 12.82 7.83 87.65 0.69 13.51 16 9 O -0.59 -21.03 15.98 -3.04 -0.05 -21.08 16 10 N -0.72 -16.17 5.54 -463.07 -2.56 -18.74 16 11 C 0.12 2.85 5.39 86.38 0.47 3.31 16 12 C 0.06 1.29 3.48 31.28 0.11 1.40 16 13 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 14 C -0.14 -2.27 6.58 32.14 0.21 -2.06 16 15 C -0.13 -2.45 6.39 31.67 0.20 -2.25 16 16 C 0.09 2.80 1.75 -10.67 -0.02 2.78 16 17 C 0.11 4.23 8.20 83.39 0.68 4.91 16 18 N -0.66 -32.81 3.70 -738.94 -2.73 -35.54 16 19 C -0.28 -17.06 11.08 84.04 0.93 -16.13 16 20 H 0.05 3.28 8.05 -2.91 -0.02 3.25 16 21 C -0.09 -5.49 5.50 84.86 0.47 -5.02 16 22 N -0.97 -65.09 13.70 21.65 0.30 -64.79 16 23 Si 1.11 57.23 25.13 68.60 1.72 58.95 16 24 H -0.30 -15.97 7.11 99.48 0.71 -15.27 16 25 H -0.25 -11.45 6.11 99.48 0.61 -10.84 16 26 H -0.29 -14.64 6.64 99.48 0.66 -13.98 16 27 C 0.08 3.31 5.18 83.48 0.43 3.74 16 28 O -0.37 -11.88 10.84 -148.98 -1.62 -13.49 16 29 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 30 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.42 1.28 8.83 -92.71 -0.82 0.46 16 33 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.13 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.05 1.32 8.06 -2.39 -0.02 1.30 16 36 H 0.04 1.10 8.06 -2.39 -0.02 1.08 16 37 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.13 1.08 8.14 -2.38 -0.02 1.06 16 39 H 0.41 7.60 8.47 -92.71 -0.79 6.81 16 40 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 41 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.08 1.38 8.05 -2.38 -0.02 1.36 16 43 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.11 1.55 8.13 -2.39 -0.02 1.53 16 45 H 0.10 1.72 7.81 -2.38 -0.02 1.70 16 46 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 47 H 0.08 2.40 8.13 -2.39 -0.02 2.38 16 48 H 0.25 16.43 8.73 -92.71 -0.81 15.62 16 49 H 0.07 2.74 7.50 -2.39 -0.02 2.72 16 50 H 0.04 1.64 4.70 -2.39 -0.01 1.63 16 Total: -1.00 -97.52 403.77 -1.92 -99.44 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -0.84 Total: 12.86 kcal Atomic # 6 Polarization: 4.97 SS G_CDS: 6.68 Total: 11.65 kcal Atomic # 7 Polarization: -122.11 SS G_CDS: -7.77 Total: -129.88 kcal Atomic # 8 Polarization: -51.31 SS G_CDS: -1.71 Total: -53.02 kcal Atomic # 14 Polarization: 57.23 SS G_CDS: 1.72 Total: 58.95 kcal Total: -97.52 -1.92 -99.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570232282.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.220 kcal (2) G-P(sol) polarization free energy of solvation -97.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.93 seconds