Wall clock time and date at job start Sat Apr 11 2020 05:50:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46500 * 119.99562 * 2 1 4 4 C 1.53001 * 109.47520 * 270.00023 * 3 2 1 5 5 H 1.09003 * 109.46548 * 59.99993 * 4 3 2 6 6 O 1.42898 * 109.47209 * 300.00480 * 4 3 2 7 7 C 1.52995 * 109.47271 * 180.02562 * 4 3 2 8 8 N 1.46906 * 109.46978 * 185.00310 * 7 4 3 9 9 C 1.46901 * 110.99793 * 180.02562 * 8 7 4 10 10 C 1.50701 * 109.46921 * 179.97438 * 9 8 7 11 11 O 1.21294 * 119.99849 * 0.02562 * 10 9 8 12 12 N 1.34780 * 119.99795 * 179.97438 * 10 9 8 13 13 C 1.37101 * 119.99707 * 180.02562 * 12 10 9 14 14 H 1.08002 * 119.99704 * 359.97438 * 13 12 10 15 15 C 1.38941 * 119.99927 * 180.02562 * 13 12 10 16 16 N 1.31417 * 120.00180 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00273 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.46986 * 359.97438 * 17 15 13 19 19 H 1.48494 * 109.47457 * 119.99901 * 17 15 13 20 20 H 1.48501 * 109.47104 * 239.99973 * 17 15 13 21 21 C 1.34771 * 119.99966 * 180.02562 * 2 1 3 22 22 O 1.21284 * 119.99904 * 179.97438 * 21 2 1 23 23 C 1.50692 * 120.00294 * 359.97438 * 21 2 1 24 24 H 1.09006 * 115.55028 * 34.41212 * 23 21 2 25 25 C 1.53001 * 117.49817 * 248.74610 * 23 21 2 26 26 C 1.53004 * 117.50051 * 180.08857 * 23 21 2 27 27 H 1.09000 * 117.49734 * 359.97438 * 26 23 21 28 28 C 1.53002 * 117.49514 * 214.97513 * 26 23 21 29 29 C 1.53007 * 117.49343 * 128.62068 * 28 26 23 30 30 C 1.52999 * 59.99999 * 252.50866 * 29 28 26 31 31 H 1.08994 * 109.47332 * 89.99708 * 1 2 3 32 32 H 1.09004 * 109.46785 * 210.00317 * 1 2 3 33 33 H 1.09005 * 109.46851 * 329.99206 * 1 2 3 34 34 H 1.09004 * 109.46756 * 150.00156 * 3 2 1 35 35 H 1.09001 * 109.47400 * 30.00790 * 3 2 1 36 36 H 0.96694 * 114.00116 * 300.00232 * 6 4 3 37 37 H 1.08995 * 109.46859 * 65.00602 * 7 4 3 38 38 H 1.09002 * 109.47639 * 305.00270 * 7 4 3 39 39 H 1.00899 * 110.99995 * 56.04730 * 8 7 4 40 40 H 1.09002 * 109.47401 * 59.99808 * 9 8 7 41 41 H 1.09001 * 109.46874 * 299.99821 * 9 8 7 42 42 H 0.96995 * 120.00011 * 0.02562 * 12 10 9 43 43 H 0.97000 * 119.99884 * 180.02562 * 16 15 13 44 44 H 1.09005 * 117.50029 * 0.02562 * 25 23 21 45 45 H 1.09004 * 117.49839 * 144.99350 * 25 23 21 46 46 H 1.08990 * 115.55521 * 274.32631 * 28 26 23 47 47 H 1.09001 * 117.50058 * 0.02562 * 29 28 26 48 48 H 1.09002 * 117.49712 * 145.01977 * 29 28 26 49 49 H 1.08996 * 117.50228 * 252.51260 * 30 29 28 50 50 H 1.09003 * 117.49641 * 107.48696 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7106 -1.4425 5 1 1.5000 1.8408 -1.9563 6 8 3.2248 0.7147 -2.1162 7 6 3.2179 3.0353 -1.4424 8 7 3.3581 3.5198 -2.8221 9 6 4.0904 4.7927 -2.8612 10 6 4.2147 5.2571 -4.2894 11 8 3.7397 4.5932 -5.1865 12 7 4.8530 6.4106 -4.5699 13 6 4.9656 6.8333 -5.8692 14 1 4.5433 6.2417 -6.6680 15 6 5.6240 8.0222 -6.1584 16 7 6.1383 8.7417 -5.1864 17 14 5.7770 8.5985 -7.9286 18 1 5.1181 7.6171 -8.8274 19 1 5.1221 9.9230 -8.0764 20 1 7.2129 8.7133 -8.2895 21 6 2.1389 -1.1672 -0.0005 22 8 3.3517 -1.1671 -0.0010 23 6 1.3855 -2.4722 -0.0005 24 1 0.4476 -2.4736 -0.5560 25 6 1.4589 -3.3303 1.2641 26 6 2.2076 -3.7626 0.0010 27 1 3.2935 -3.6675 0.0015 28 6 1.6500 -4.9563 -0.7769 29 6 2.5799 -5.6427 -1.7795 30 6 1.4220 -4.7764 -2.2791 31 1 -0.3633 0.0001 -1.0276 32 1 -0.3633 -0.8900 0.5139 33 1 -0.3633 0.8900 0.5140 34 1 3.1499 1.1384 0.5138 35 1 1.6084 2.0284 0.5139 36 1 4.0872 0.5462 -1.7127 37 1 4.2062 2.8838 -1.0083 38 1 2.6709 3.7710 -0.8528 39 1 2.4573 3.6067 -3.2682 40 1 5.0847 4.6531 -2.4370 41 1 3.5498 5.5408 -2.2813 42 1 5.2325 6.9417 -3.8524 43 1 6.5976 9.5719 -5.3883 44 1 2.0518 -2.9506 2.0963 45 1 0.5692 -3.8962 1.5407 46 1 0.9449 -5.5843 -0.2325 47 1 3.5890 -5.2441 -1.8846 48 1 2.4867 -6.7226 -1.8947 49 1 0.5670 -5.2863 -2.7229 50 1 1.6691 -3.8076 -2.7131 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571592130.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:06 Heat of formation + Delta-G solvation = -66.425039 kcal Electronic energy + Delta-G solvation = -28898.256930 eV Core-core repulsion = 24734.299833 eV Total energy + Delta-G solvation = -4163.957097 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.56917 -38.70328 -38.23055 -37.40707 -35.56871 -35.21460 -34.65159 -33.74229 -31.21874 -30.61088 -27.87445 -26.91708 -25.60083 -24.37300 -23.70838 -22.88270 -22.58922 -21.66709 -20.41037 -19.23972 -19.19124 -17.87112 -17.63433 -17.03870 -16.26870 -16.13011 -15.98771 -15.75156 -15.19797 -15.06600 -14.79343 -14.52672 -14.39354 -14.09194 -13.76952 -13.56535 -13.36963 -13.15131 -13.05038 -12.78222 -12.55880 -12.42456 -12.03039 -11.92316 -11.77919 -11.71541 -11.51081 -11.46798 -11.29314 -11.24631 -11.10933 -11.03075 -10.41464 -10.32311 -10.23108 -10.19092 -10.06532 -9.86299 -9.49578 -8.82647 -8.40673 -8.00595 -7.92738 -6.39484 -3.80117 2.24404 2.63861 3.18218 3.26673 3.28557 3.36326 3.61916 3.93596 4.01760 4.10837 4.27755 4.28065 4.40477 4.49887 4.61547 4.71767 4.72241 4.77341 4.84493 4.91180 4.94957 5.03157 5.08389 5.11768 5.16265 5.24824 5.26841 5.31150 5.33747 5.36115 5.42695 5.51894 5.57631 5.59752 5.76948 5.80714 5.84076 5.93847 5.99155 6.00369 6.16558 6.29107 7.08163 7.22177 7.57839 7.65942 7.87217 7.98615 8.09304 8.64146 9.20631 9.57017 10.08848 10.78427 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020456 B = 0.001704 C = 0.001624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.486001 B =16430.357106 C =17232.007058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.608 5.608 3 C 0.083 3.917 4 C 0.098 3.902 5 H 0.094 0.906 6 O -0.538 6.538 7 C 0.030 3.970 8 N -0.658 5.658 9 C 0.051 3.949 10 C 0.441 3.559 11 O -0.581 6.581 12 N -0.565 5.565 13 C -0.298 4.298 14 H 0.104 0.896 15 C 0.021 3.979 16 N -0.903 5.903 17 Si 0.930 3.070 18 H -0.268 1.268 19 H -0.282 1.282 20 H -0.281 1.281 21 C 0.552 3.448 22 O -0.535 6.535 23 C -0.184 4.184 24 H 0.124 0.876 25 C -0.146 4.146 26 C -0.087 4.087 27 H 0.120 0.880 28 C -0.130 4.130 29 C -0.173 4.173 30 C -0.176 4.176 31 H 0.058 0.942 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.376 0.624 37 H 0.075 0.925 38 H 0.033 0.967 39 H 0.349 0.651 40 H 0.085 0.915 41 H 0.042 0.958 42 H 0.392 0.608 43 H 0.270 0.730 44 H 0.099 0.901 45 H 0.104 0.896 46 H 0.107 0.893 47 H 0.097 0.903 48 H 0.094 0.906 49 H 0.094 0.906 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.002 -22.441 18.060 31.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.340 5.340 3 C -0.041 4.041 4 C 0.037 3.963 5 H 0.112 0.888 6 O -0.343 6.343 7 C -0.101 4.101 8 N -0.291 5.291 9 C -0.082 4.082 10 C 0.227 3.773 11 O -0.464 6.464 12 N -0.202 5.202 13 C -0.427 4.427 14 H 0.121 0.879 15 C -0.180 4.180 16 N -0.544 5.544 17 Si 0.757 3.243 18 H -0.192 1.192 19 H -0.208 1.208 20 H -0.207 1.207 21 C 0.340 3.660 22 O -0.411 6.411 23 C -0.205 4.205 24 H 0.142 0.858 25 C -0.184 4.184 26 C -0.105 4.105 27 H 0.137 0.863 28 C -0.148 4.148 29 C -0.210 4.210 30 C -0.213 4.213 31 H 0.076 0.924 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.106 0.894 35 H 0.103 0.897 36 H 0.223 0.777 37 H 0.094 0.906 38 H 0.051 0.949 39 H 0.168 0.832 40 H 0.103 0.897 41 H 0.060 0.940 42 H 0.225 0.775 43 H 0.080 0.920 44 H 0.118 0.882 45 H 0.122 0.878 46 H 0.125 0.875 47 H 0.115 0.885 48 H 0.113 0.887 49 H 0.112 0.888 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -12.547 -23.087 16.916 31.250 hybrid contribution -0.026 1.641 0.315 1.671 sum -12.572 -21.446 17.231 30.247 Atomic orbital electron populations 1.21843 0.79360 1.03198 1.02172 1.47541 1.06901 1.05613 1.73989 1.22252 0.98579 0.85111 0.98129 1.22222 0.95286 0.87278 0.91560 0.88765 1.86591 1.33101 1.58279 1.56327 1.22629 1.00592 0.95928 0.90974 1.59934 1.25442 1.29059 1.14627 1.21690 0.99578 0.90233 0.96694 1.19812 0.84496 0.83280 0.89736 1.90535 1.52060 1.56253 1.47599 1.41869 1.49541 1.19600 1.09201 1.19765 1.33516 1.04957 0.84508 0.87866 1.25262 0.96775 0.96258 0.99743 1.69624 1.37592 1.15220 1.31991 0.85793 0.77946 0.78505 0.82064 1.19214 1.20801 1.20750 1.19555 0.87244 0.84128 0.75057 1.90655 1.13871 1.87097 1.49517 1.22306 1.02620 0.90426 1.05131 0.85850 1.23058 1.02944 1.01304 0.91073 1.21827 0.98870 0.91363 0.98464 0.86251 1.21767 1.03137 0.98630 0.91304 1.22993 0.96087 0.98730 1.03228 1.23001 1.00413 1.02175 0.95713 0.92364 0.90755 0.90972 0.89396 0.89713 0.77680 0.90648 0.94875 0.83173 0.89663 0.94034 0.77492 0.91969 0.88244 0.87795 0.87486 0.88454 0.88744 0.88784 0.88361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.43 10.05 59.85 0.60 1.04 16 2 N -0.61 -5.40 2.83 -181.57 -0.51 -5.91 16 3 C 0.08 0.74 5.19 -4.04 -0.02 0.72 16 4 C 0.10 1.12 3.42 -26.73 -0.09 1.03 16 5 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 6 O -0.54 -7.91 12.09 -44.02 -0.53 -8.44 16 7 C 0.03 0.36 5.32 -3.82 -0.02 0.34 16 8 N -0.66 -11.14 6.07 -115.05 -0.70 -11.84 16 9 C 0.05 0.92 6.17 -4.97 -0.03 0.89 16 10 C 0.44 10.77 7.82 -10.98 -0.09 10.69 16 11 O -0.58 -16.39 15.78 5.55 0.09 -16.30 16 12 N -0.57 -14.68 5.29 -10.96 -0.06 -14.74 16 13 C -0.30 -8.49 9.68 -14.94 -0.14 -8.64 16 14 H 0.10 3.10 7.16 -52.49 -0.38 2.72 16 15 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 16 N -0.90 -24.91 13.05 55.50 0.72 -24.18 16 17 Si 0.93 21.41 29.55 -169.99 -5.02 16.38 16 18 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 19 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 20 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 21 C 0.55 5.93 6.97 -10.99 -0.08 5.85 16 22 O -0.53 -7.49 14.62 -3.24 -0.05 -7.53 16 23 C -0.18 -1.47 4.44 -91.77 -0.41 -1.88 16 24 H 0.12 0.83 7.27 -51.93 -0.38 0.45 16 25 C -0.15 -0.93 9.96 -26.69 -0.27 -1.20 16 26 C -0.09 -0.70 5.38 -90.58 -0.49 -1.19 16 27 H 0.12 1.20 7.67 -51.93 -0.40 0.80 16 28 C -0.13 -0.90 5.87 -90.61 -0.53 -1.43 16 29 C -0.17 -1.24 10.25 -26.73 -0.27 -1.51 16 30 C -0.18 -1.30 10.18 -26.73 -0.27 -1.57 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.31 6.64 -51.93 -0.34 -0.03 16 33 H 0.07 0.30 7.89 -51.93 -0.41 -0.11 16 34 H 0.09 0.87 7.42 -51.93 -0.39 0.48 16 35 H 0.08 0.55 7.89 -51.93 -0.41 0.14 16 36 H 0.38 5.17 8.45 45.56 0.38 5.55 16 37 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.03 0.35 8.14 -51.93 -0.42 -0.08 16 39 H 0.35 6.11 8.43 -39.29 -0.33 5.78 16 40 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 41 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.39 9.69 7.90 -40.82 -0.32 9.36 16 43 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 44 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 46 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 48 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 49 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 50 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 417.67 15.07 6.29 6.29 Total: -1.00 -35.15 417.67 -9.57 -44.72 By element: Atomic # 1 Polarization: 25.52 SS G_CDS: -7.60 Total: 17.91 kcal Atomic # 6 Polarization: 5.83 SS G_CDS: -2.20 Total: 3.63 kcal Atomic # 7 Polarization: -56.12 SS G_CDS: -0.55 Total: -56.67 kcal Atomic # 8 Polarization: -31.78 SS G_CDS: -0.49 Total: -32.28 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -35.15 -9.57 -44.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571592130.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.700 kcal (2) G-P(sol) polarization free energy of solvation -35.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds