Wall clock time and date at job start Sat Apr 11 2020 05:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46500 * 119.99562 * 2 1 4 4 C 1.53001 * 109.47520 * 270.00023 * 3 2 1 5 5 H 1.09003 * 109.46548 * 59.99993 * 4 3 2 6 6 O 1.42898 * 109.47209 * 300.00480 * 4 3 2 7 7 C 1.52995 * 109.47271 * 180.02562 * 4 3 2 8 8 N 1.46906 * 109.46978 * 185.00310 * 7 4 3 9 9 C 1.46901 * 110.99793 * 180.02562 * 8 7 4 10 10 C 1.50701 * 109.46921 * 179.97438 * 9 8 7 11 11 O 1.21294 * 119.99849 * 0.02562 * 10 9 8 12 12 N 1.34780 * 119.99795 * 179.97438 * 10 9 8 13 13 C 1.37101 * 119.99707 * 180.02562 * 12 10 9 14 14 H 1.08002 * 119.99704 * 359.97438 * 13 12 10 15 15 C 1.38941 * 119.99927 * 180.02562 * 13 12 10 16 16 N 1.31417 * 120.00180 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00273 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.46986 * 359.97438 * 17 15 13 19 19 H 1.48494 * 109.47457 * 119.99901 * 17 15 13 20 20 H 1.48501 * 109.47104 * 239.99973 * 17 15 13 21 21 C 1.34771 * 119.99966 * 180.02562 * 2 1 3 22 22 O 1.21284 * 119.99904 * 179.97438 * 21 2 1 23 23 C 1.50692 * 120.00294 * 359.97438 * 21 2 1 24 24 H 1.09006 * 115.55028 * 34.41212 * 23 21 2 25 25 C 1.53001 * 117.49817 * 248.74610 * 23 21 2 26 26 C 1.53004 * 117.50051 * 180.08857 * 23 21 2 27 27 H 1.09000 * 117.49734 * 359.97438 * 26 23 21 28 28 C 1.53002 * 117.49514 * 214.97513 * 26 23 21 29 29 C 1.53007 * 117.49343 * 128.62068 * 28 26 23 30 30 C 1.52999 * 59.99999 * 252.50866 * 29 28 26 31 31 H 1.08994 * 109.47332 * 89.99708 * 1 2 3 32 32 H 1.09004 * 109.46785 * 210.00317 * 1 2 3 33 33 H 1.09005 * 109.46851 * 329.99206 * 1 2 3 34 34 H 1.09004 * 109.46756 * 150.00156 * 3 2 1 35 35 H 1.09001 * 109.47400 * 30.00790 * 3 2 1 36 36 H 0.96694 * 114.00116 * 300.00232 * 6 4 3 37 37 H 1.08995 * 109.46859 * 65.00602 * 7 4 3 38 38 H 1.09002 * 109.47639 * 305.00270 * 7 4 3 39 39 H 1.00899 * 110.99995 * 56.04730 * 8 7 4 40 40 H 1.09002 * 109.47401 * 59.99808 * 9 8 7 41 41 H 1.09001 * 109.46874 * 299.99821 * 9 8 7 42 42 H 0.96995 * 120.00011 * 0.02562 * 12 10 9 43 43 H 0.97000 * 119.99884 * 180.02562 * 16 15 13 44 44 H 1.09005 * 117.50029 * 0.02562 * 25 23 21 45 45 H 1.09004 * 117.49839 * 144.99350 * 25 23 21 46 46 H 1.08990 * 115.55521 * 274.32631 * 28 26 23 47 47 H 1.09001 * 117.50058 * 0.02562 * 29 28 26 48 48 H 1.09002 * 117.49712 * 145.01977 * 29 28 26 49 49 H 1.08996 * 117.50228 * 252.51260 * 30 29 28 50 50 H 1.09003 * 117.49641 * 107.48696 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7106 -1.4425 5 1 1.5000 1.8408 -1.9563 6 8 3.2248 0.7147 -2.1162 7 6 3.2179 3.0353 -1.4424 8 7 3.3581 3.5198 -2.8221 9 6 4.0904 4.7927 -2.8612 10 6 4.2147 5.2571 -4.2894 11 8 3.7397 4.5932 -5.1865 12 7 4.8530 6.4106 -4.5699 13 6 4.9656 6.8333 -5.8692 14 1 4.5433 6.2417 -6.6680 15 6 5.6240 8.0222 -6.1584 16 7 6.1383 8.7417 -5.1864 17 14 5.7770 8.5985 -7.9286 18 1 5.1181 7.6171 -8.8274 19 1 5.1221 9.9230 -8.0764 20 1 7.2129 8.7133 -8.2895 21 6 2.1389 -1.1672 -0.0005 22 8 3.3517 -1.1671 -0.0010 23 6 1.3855 -2.4722 -0.0005 24 1 0.4476 -2.4736 -0.5560 25 6 1.4589 -3.3303 1.2641 26 6 2.2076 -3.7626 0.0010 27 1 3.2935 -3.6675 0.0015 28 6 1.6500 -4.9563 -0.7769 29 6 2.5799 -5.6427 -1.7795 30 6 1.4220 -4.7764 -2.2791 31 1 -0.3633 0.0001 -1.0276 32 1 -0.3633 -0.8900 0.5139 33 1 -0.3633 0.8900 0.5140 34 1 3.1499 1.1384 0.5138 35 1 1.6084 2.0284 0.5139 36 1 4.0872 0.5462 -1.7127 37 1 4.2062 2.8838 -1.0083 38 1 2.6709 3.7710 -0.8528 39 1 2.4573 3.6067 -3.2682 40 1 5.0847 4.6531 -2.4370 41 1 3.5498 5.5408 -2.2813 42 1 5.2325 6.9417 -3.8524 43 1 6.5976 9.5719 -5.3883 44 1 2.0518 -2.9506 2.0963 45 1 0.5692 -3.8962 1.5407 46 1 0.9449 -5.5843 -0.2325 47 1 3.5890 -5.2441 -1.8846 48 1 2.4867 -6.7226 -1.8947 49 1 0.5670 -5.2863 -2.7229 50 1 1.6691 -3.8076 -2.7131 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571592130.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:05 Heat of formation + Delta-G solvation = -93.096633 kcal Electronic energy + Delta-G solvation = -28899.413497 eV Core-core repulsion = 24734.299833 eV Total energy + Delta-G solvation = -4165.113664 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.30567 -40.20796 -39.31338 -38.37999 -36.49507 -36.10668 -35.82729 -35.56103 -33.29191 -31.62620 -29.05903 -27.60692 -27.00422 -25.61479 -24.55284 -23.74715 -23.21733 -22.59785 -21.12400 -20.98409 -19.94116 -19.90081 -18.38402 -18.16640 -17.48379 -17.14483 -16.97059 -16.67543 -16.50046 -16.18317 -16.02977 -15.83714 -15.61322 -15.22536 -15.05296 -14.74694 -14.38801 -14.21520 -13.91831 -13.76208 -13.49243 -13.31940 -13.22447 -13.16137 -13.00639 -12.81052 -12.60728 -12.49968 -12.42882 -12.30755 -12.12926 -12.05267 -11.86496 -11.81390 -11.53707 -11.21684 -10.99327 -10.77148 -10.53621 -10.36963 -10.03665 -9.56198 -9.29191 -8.48779 -5.97759 1.35231 1.40477 1.49749 1.55054 1.98340 2.02602 2.27982 2.66058 2.88925 3.04031 3.18162 3.40027 3.51490 3.64429 3.70640 3.81940 3.83747 4.01461 4.12566 4.14597 4.14994 4.24501 4.29584 4.35008 4.38460 4.41813 4.46871 4.52392 4.53460 4.63882 4.67925 4.72441 4.79934 4.80024 4.94093 4.98295 5.03324 5.09129 5.20967 5.26651 5.35001 5.39115 5.51708 5.86208 6.08258 6.35554 6.38893 6.58121 6.83397 7.10602 7.21944 7.53623 8.09502 8.68815 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020456 B = 0.001704 C = 0.001624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.486001 B =16430.357106 C =17232.007058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.607 5.607 3 C 0.089 3.911 4 C 0.100 3.900 5 H 0.092 0.908 6 O -0.564 6.564 7 C 0.034 3.966 8 N -0.680 5.680 9 C 0.067 3.933 10 C 0.436 3.564 11 O -0.625 6.625 12 N -0.572 5.572 13 C -0.335 4.335 14 H 0.077 0.923 15 C -0.013 4.013 16 N -0.919 5.919 17 Si 0.994 3.006 18 H -0.275 1.275 19 H -0.268 1.268 20 H -0.271 1.271 21 C 0.539 3.461 22 O -0.579 6.579 23 C -0.188 4.188 24 H 0.140 0.860 25 C -0.122 4.122 26 C -0.103 4.103 27 H 0.090 0.910 28 C -0.119 4.119 29 C -0.182 4.182 30 C -0.181 4.181 31 H 0.055 0.945 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.077 0.923 35 H 0.118 0.882 36 H 0.375 0.625 37 H 0.079 0.921 38 H 0.063 0.937 39 H 0.343 0.657 40 H 0.101 0.899 41 H 0.071 0.929 42 H 0.397 0.603 43 H 0.278 0.722 44 H 0.093 0.907 45 H 0.134 0.866 46 H 0.130 0.870 47 H 0.081 0.919 48 H 0.111 0.889 49 H 0.110 0.890 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.714 -22.457 19.690 33.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.339 5.339 3 C -0.035 4.035 4 C 0.039 3.961 5 H 0.110 0.890 6 O -0.370 6.370 7 C -0.096 4.096 8 N -0.313 5.313 9 C -0.066 4.066 10 C 0.223 3.777 11 O -0.512 6.512 12 N -0.210 5.210 13 C -0.465 4.465 14 H 0.095 0.905 15 C -0.213 4.213 16 N -0.560 5.560 17 Si 0.818 3.182 18 H -0.200 1.200 19 H -0.193 1.193 20 H -0.196 1.196 21 C 0.329 3.671 22 O -0.459 6.459 23 C -0.208 4.208 24 H 0.157 0.843 25 C -0.159 4.159 26 C -0.122 4.122 27 H 0.108 0.892 28 C -0.137 4.137 29 C -0.219 4.219 30 C -0.218 4.218 31 H 0.074 0.926 32 H 0.110 0.890 33 H 0.112 0.888 34 H 0.095 0.905 35 H 0.136 0.864 36 H 0.223 0.777 37 H 0.097 0.903 38 H 0.081 0.919 39 H 0.161 0.839 40 H 0.119 0.881 41 H 0.089 0.911 42 H 0.231 0.769 43 H 0.088 0.912 44 H 0.112 0.888 45 H 0.152 0.848 46 H 0.148 0.852 47 H 0.099 0.901 48 H 0.129 0.871 49 H 0.128 0.872 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -14.281 -23.081 18.593 32.899 hybrid contribution 0.506 1.644 -0.172 1.728 sum -13.775 -21.437 18.422 31.443 Atomic orbital electron populations 1.22088 0.77156 1.05204 1.02657 1.47686 1.08321 1.05026 1.72819 1.22185 0.99002 0.86050 0.96291 1.22320 0.94495 0.86321 0.92967 0.88978 1.86558 1.33443 1.59449 1.57514 1.22681 1.01493 0.96683 0.88715 1.59917 1.25224 1.28419 1.17742 1.21536 1.01208 0.91588 0.92247 1.20931 0.82567 0.82085 0.92093 1.90500 1.53487 1.57299 1.49867 1.41930 1.50109 1.20362 1.08581 1.19706 1.35525 1.06003 0.85263 0.90492 1.26052 0.95680 0.95667 1.03863 1.69677 1.37262 1.15472 1.33619 0.84856 0.78319 0.78099 0.76955 1.19953 1.19323 1.19590 1.20120 0.87016 0.85516 0.74423 1.90630 1.15802 1.87826 1.51645 1.22327 1.02689 0.89026 1.06800 0.84275 1.23148 1.03198 0.99746 0.89818 1.21767 0.97592 0.92217 1.00601 0.89201 1.21822 1.02943 0.98088 0.90855 1.23048 0.95355 0.99619 1.03836 1.22985 1.01040 1.01348 0.96409 0.92586 0.88997 0.88850 0.90494 0.86400 0.77709 0.90278 0.91852 0.83872 0.88103 0.91102 0.76906 0.91242 0.88817 0.84793 0.85190 0.90083 0.87091 0.87166 0.90565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.62 10.05 127.77 1.28 1.90 16 2 N -0.61 -10.01 2.83 -846.75 -2.39 -12.40 16 3 C 0.09 1.45 5.19 86.38 0.45 1.90 16 4 C 0.10 2.19 3.42 30.59 0.10 2.30 16 5 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 6 O -0.56 -17.05 12.09 -140.57 -1.70 -18.75 16 7 C 0.03 0.77 5.32 86.30 0.46 1.23 16 8 N -0.68 -22.57 6.07 -517.92 -3.15 -25.72 16 9 C 0.07 2.35 6.17 85.56 0.53 2.87 16 10 C 0.44 21.55 7.82 87.66 0.69 22.24 16 11 O -0.63 -36.37 15.78 -3.07 -0.05 -36.42 16 12 N -0.57 -30.19 5.29 -306.98 -1.62 -31.82 16 13 C -0.34 -19.57 9.68 84.04 0.81 -18.75 16 14 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 15 C -0.01 -0.70 5.50 84.92 0.47 -0.23 16 16 N -0.92 -50.19 13.05 21.66 0.28 -49.91 16 17 Si 0.99 43.74 29.55 68.60 2.03 45.77 16 18 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 19 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 20 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 21 C 0.54 11.58 6.97 87.66 0.61 12.19 16 22 O -0.58 -17.01 14.62 5.36 0.08 -16.93 16 23 C -0.19 -2.83 4.44 -11.54 -0.05 -2.88 16 24 H 0.14 1.62 7.27 -2.38 -0.02 1.60 16 25 C -0.12 -1.33 9.96 30.62 0.30 -1.02 16 26 C -0.10 -1.65 5.38 -10.77 -0.06 -1.71 16 27 H 0.09 1.98 7.67 -2.39 -0.02 1.96 16 28 C -0.12 -1.51 5.87 -10.79 -0.06 -1.57 16 29 C -0.18 -2.58 10.25 30.60 0.31 -2.26 16 30 C -0.18 -2.60 10.18 30.59 0.31 -2.29 16 31 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.09 0.49 6.64 -2.38 -0.02 0.47 16 33 H 0.09 0.44 7.89 -2.38 -0.02 0.42 16 34 H 0.08 1.47 7.42 -2.39 -0.02 1.45 16 35 H 0.12 1.14 7.89 -2.39 -0.02 1.12 16 36 H 0.38 10.94 8.45 -74.06 -0.63 10.31 16 37 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.34 11.96 8.43 -89.69 -0.76 11.20 16 40 H 0.10 3.27 8.14 -2.39 -0.02 3.25 16 41 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 42 H 0.40 19.72 7.90 -92.71 -0.73 18.98 16 43 H 0.28 14.13 8.31 -92.71 -0.77 13.36 16 44 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 45 H 0.13 0.67 8.14 -2.38 -0.02 0.65 16 46 H 0.13 1.06 8.14 -2.39 -0.02 1.04 16 47 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 48 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 49 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 50 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -79.17 417.67 -1.51 -80.68 By element: Atomic # 1 Polarization: 52.75 SS G_CDS: -1.14 Total: 51.60 kcal Atomic # 6 Polarization: 7.75 SS G_CDS: 6.16 Total: 13.91 kcal Atomic # 7 Polarization: -112.97 SS G_CDS: -6.88 Total: -119.85 kcal Atomic # 8 Polarization: -70.44 SS G_CDS: -1.67 Total: -72.11 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -79.17 -1.51 -80.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571592130.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.419 kcal (2) G-P(sol) polarization free energy of solvation -79.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds