Wall clock time and date at job start Sat Apr 11 2020 05:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46900 * 110.99570 * 2 1 4 4 C 1.50699 * 109.47557 * 293.95368 * 3 2 1 5 5 O 1.21294 * 119.99717 * 359.97438 * 4 3 2 6 6 N 1.34772 * 120.00463 * 180.02562 * 4 3 2 7 7 C 1.37095 * 120.00466 * 180.02562 * 6 4 3 8 8 H 1.08003 * 119.99922 * 359.97438 * 7 6 4 9 9 C 1.38948 * 120.00385 * 179.97438 * 7 6 4 10 10 N 1.31417 * 119.99719 * 359.97438 * 9 7 6 11 11 Si 1.86795 * 120.00007 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47297 * 359.97438 * 11 9 7 13 13 H 1.48496 * 109.47282 * 120.00055 * 11 9 7 14 14 H 1.48506 * 109.46798 * 239.99649 * 11 9 7 15 15 C 1.46897 * 111.00126 * 123.95281 * 2 1 3 16 16 C 1.52998 * 109.47148 * 66.04935 * 15 2 1 17 17 H 1.09005 * 109.47380 * 305.00046 * 16 15 2 18 18 O 1.42908 * 109.47114 * 64.99859 * 16 15 2 19 19 C 1.52992 * 109.47568 * 185.00061 * 16 15 2 20 20 N 1.46499 * 109.47757 * 180.02562 * 19 16 15 21 21 C 1.46504 * 119.99649 * 270.00237 * 20 19 16 22 22 C 1.34775 * 120.00209 * 89.99123 * 20 19 16 23 23 O 1.21613 * 120.00008 * 0.41686 * 22 20 19 24 24 C 1.47100 * 119.99705 * 180.40667 * 22 20 19 25 25 C 1.32621 * 124.61816 * 172.49193 * 24 22 20 26 26 C 1.51113 * 110.75549 * 180.26731 * 25 24 22 27 27 C 1.54736 * 104.76082 * 343.03373 * 26 25 24 28 28 C 1.51113 * 124.62397 * 352.51553 * 24 22 20 29 29 H 1.08995 * 109.47377 * 296.04017 * 1 2 3 30 30 H 1.08994 * 109.47263 * 56.05026 * 1 2 3 31 31 H 1.09004 * 109.46329 * 176.04131 * 1 2 3 32 32 H 1.08998 * 109.47063 * 53.95239 * 3 2 1 33 33 H 1.08997 * 109.47189 * 173.95375 * 3 2 1 34 34 H 0.97001 * 119.99929 * 359.97438 * 6 4 3 35 35 H 0.97001 * 119.99486 * 180.02562 * 10 9 7 36 36 H 1.08999 * 109.47217 * 306.05312 * 15 2 1 37 37 H 1.08996 * 109.47090 * 186.04807 * 15 2 1 38 38 H 0.96697 * 113.99916 * 60.00417 * 18 16 15 39 39 H 1.08999 * 109.47419 * 59.99412 * 19 16 15 40 40 H 1.09004 * 109.46804 * 299.99819 * 19 16 15 41 41 H 1.09003 * 109.46922 * 263.28546 * 21 20 19 42 42 H 1.09001 * 109.47191 * 23.28473 * 21 20 19 43 43 H 1.09004 * 109.47265 * 143.28787 * 21 20 19 44 44 H 1.07998 * 124.61673 * 359.97438 * 25 24 22 45 45 H 1.08995 * 110.36590 * 102.00340 * 26 25 24 46 46 H 1.09007 * 110.36372 * 224.31579 * 26 25 24 47 47 H 1.09003 * 111.19830 * 267.19933 * 27 26 25 48 48 H 1.08997 * 110.84365 * 143.35126 * 27 26 25 49 49 H 1.08996 * 110.36222 * 315.41842 * 28 24 22 50 50 H 1.08997 * 110.36264 * 77.73435 * 28 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 -1.2984 5 8 1.0054 1.4453 -2.1411 6 7 2.0187 3.3199 -1.5237 7 6 1.6921 3.9349 -2.7047 8 1 1.1292 3.3992 -3.4547 9 6 2.0854 5.2472 -2.9367 10 7 2.7700 5.8991 -2.0238 11 14 1.6397 6.0852 -4.5455 12 1 0.8718 5.1428 -5.3984 13 1 0.8128 7.2864 -4.2655 14 1 2.8809 6.4924 -5.2519 15 6 1.9955 -0.7659 1.1376 16 6 1.6316 -2.2426 0.9703 17 1 0.5533 -2.3390 0.8432 18 8 2.2958 -2.7695 -0.1801 19 6 2.0701 -3.0199 2.2130 20 7 1.7222 -4.4339 2.0526 21 6 0.4183 -4.9235 2.5070 22 6 2.6015 -5.2843 1.4869 23 8 3.6868 -4.8793 1.1164 24 6 2.2486 -6.7023 1.3178 25 6 2.9782 -7.5858 0.6500 26 6 2.3210 -8.9464 0.6686 27 6 1.2872 -8.8692 1.8173 28 6 1.0052 -7.3507 1.8808 29 1 -0.3634 0.4511 0.9233 30 1 -0.3633 0.5739 -0.8524 31 1 -0.3632 -1.0253 -0.0710 32 1 1.5610 1.9273 0.8309 33 1 3.0797 1.3445 0.1082 34 1 2.5241 3.8012 -0.8499 35 1 3.0442 6.8154 -2.1856 36 1 1.5611 -0.3873 2.0628 37 1 3.0798 -0.6610 1.1756 38 1 3.2603 -2.7166 -0.1360 39 1 1.5636 -2.6180 3.0905 40 1 3.1484 -2.9236 2.3400 41 1 0.5197 -5.3573 3.5019 42 1 -0.2888 -4.0947 2.5423 43 1 0.0540 -5.6828 1.8150 44 1 3.9122 -7.3621 0.1560 45 1 1.8228 -9.1400 -0.2813 46 1 3.0591 -9.7214 0.8756 47 1 1.7125 -9.2267 2.7551 48 1 0.3837 -9.4237 1.5639 49 1 0.8478 -7.0368 2.9126 50 1 0.1374 -7.1002 1.2706 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571600502.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:16 Heat of formation + Delta-G solvation = -74.190124 kcal Electronic energy + Delta-G solvation = -29647.474902 eV Core-core repulsion = 25483.181086 eV Total energy + Delta-G solvation = -4164.293816 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.61118 -38.87099 -38.21560 -37.37096 -35.85094 -35.13837 -33.77351 -31.22598 -31.04788 -29.67767 -29.11274 -27.80318 -27.12157 -26.35635 -24.78002 -23.09753 -21.60390 -21.03306 -20.83648 -19.09838 -18.69993 -17.79573 -17.04473 -16.88873 -16.51797 -15.98593 -15.94388 -15.53381 -15.29712 -15.00519 -14.67342 -14.47858 -14.28169 -13.75467 -13.61146 -13.51496 -13.40455 -13.26079 -12.93044 -12.83239 -12.52961 -12.40538 -12.05950 -12.00918 -11.98975 -11.65511 -11.55705 -11.45714 -11.38627 -11.24101 -11.05902 -10.92812 -10.79514 -10.30997 -10.21170 -10.17596 -9.95349 -9.44465 -9.32870 -8.70972 -8.35313 -7.92596 -7.76618 -6.37833 -3.78234 1.13117 2.71196 3.11257 3.19199 3.29420 3.37085 3.94327 3.97324 4.04156 4.14208 4.26490 4.44555 4.52278 4.61258 4.75248 4.81110 4.83834 4.96987 5.03565 5.10376 5.14730 5.17428 5.21687 5.25152 5.29670 5.33650 5.36657 5.43814 5.46286 5.53155 5.56846 5.71254 5.74171 5.75205 5.90895 5.97376 6.02201 6.04512 6.20431 6.25643 6.33290 6.59940 7.15067 7.32141 7.43094 7.59471 7.92579 8.03298 8.11307 8.66800 9.22840 9.59318 10.11761 10.80161 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.028004 B = 0.001814 C = 0.001787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.629049 B =15428.372454 C =15666.523866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.507 5.507 3 C 0.046 3.954 4 C 0.445 3.555 5 O -0.574 6.574 6 N -0.566 5.566 7 C -0.296 4.296 8 H 0.103 0.897 9 C 0.021 3.979 10 N -0.903 5.903 11 Si 0.929 3.071 12 H -0.268 1.268 13 H -0.282 1.282 14 H -0.282 1.282 15 C 0.024 3.976 16 C 0.099 3.901 17 H 0.096 0.904 18 O -0.537 6.537 19 C 0.082 3.918 20 N -0.605 5.605 21 C 0.059 3.941 22 C 0.573 3.427 23 O -0.537 6.537 24 C -0.194 4.194 25 C -0.073 4.073 26 C -0.108 4.108 27 C -0.128 4.128 28 C -0.095 4.095 29 H 0.011 0.989 30 H 0.096 0.904 31 H 0.059 0.941 32 H 0.046 0.954 33 H 0.087 0.913 34 H 0.391 0.609 35 H 0.270 0.730 36 H 0.037 0.963 37 H 0.077 0.923 38 H 0.375 0.625 39 H 0.084 0.916 40 H 0.088 0.912 41 H 0.057 0.943 42 H 0.070 0.930 43 H 0.090 0.910 44 H 0.138 0.862 45 H 0.086 0.914 46 H 0.079 0.921 47 H 0.073 0.927 48 H 0.076 0.924 49 H 0.081 0.919 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.247 -26.414 15.300 30.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.230 5.230 3 C -0.086 4.086 4 C 0.231 3.769 5 O -0.458 6.458 6 N -0.203 5.203 7 C -0.426 4.426 8 H 0.121 0.879 9 C -0.181 4.181 10 N -0.545 5.545 11 Si 0.756 3.244 12 H -0.192 1.192 13 H -0.208 1.208 14 H -0.208 1.208 15 C -0.105 4.105 16 C 0.038 3.962 17 H 0.114 0.886 18 O -0.342 6.342 19 C -0.042 4.042 20 N -0.337 5.337 21 C -0.084 4.084 22 C 0.364 3.636 23 O -0.415 6.415 24 C -0.197 4.197 25 C -0.093 4.093 26 C -0.145 4.145 27 C -0.165 4.165 28 C -0.132 4.132 29 H 0.030 0.970 30 H 0.114 0.886 31 H 0.078 0.922 32 H 0.063 0.937 33 H 0.105 0.895 34 H 0.225 0.775 35 H 0.080 0.920 36 H 0.055 0.945 37 H 0.096 0.904 38 H 0.222 0.778 39 H 0.102 0.898 40 H 0.106 0.894 41 H 0.075 0.925 42 H 0.088 0.912 43 H 0.108 0.892 44 H 0.156 0.844 45 H 0.105 0.895 46 H 0.097 0.903 47 H 0.091 0.909 48 H 0.095 0.905 49 H 0.099 0.901 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -3.507 -26.739 13.916 30.347 hybrid contribution 0.380 1.540 0.746 1.753 sum -3.126 -25.199 14.663 29.321 Atomic orbital electron populations 1.22565 0.86922 1.01837 1.01238 1.61450 1.08489 1.12391 1.40720 1.21879 1.00633 0.88954 0.97089 1.19737 0.85368 0.82882 0.88951 1.90496 1.43744 1.64551 1.47024 1.41871 1.49594 1.10800 1.18080 1.19752 1.32688 0.95402 0.94756 0.87878 1.25255 0.96918 0.96668 0.99223 1.69627 1.38311 1.12153 1.34390 0.85801 0.78188 0.78978 0.81386 1.19232 1.20834 1.20779 1.22809 1.00843 0.94460 0.92405 1.22260 0.98114 0.90319 0.85540 0.88576 1.86597 1.23669 1.83727 1.40194 1.22254 1.02731 0.80530 0.98661 1.47464 1.16735 1.08473 1.61021 1.22554 0.84431 1.01377 1.00025 1.17899 0.83725 0.85197 0.76804 1.90753 1.22879 1.78362 1.49480 1.21773 0.99297 0.93386 1.05203 1.24057 0.97638 0.94182 0.93402 1.21522 0.98104 0.95160 0.99712 1.22541 0.99220 0.96017 0.98737 1.21767 0.95603 0.94364 1.01423 0.97023 0.88564 0.92192 0.93651 0.89498 0.77548 0.92004 0.94508 0.90431 0.77772 0.89798 0.89351 0.92453 0.91158 0.89179 0.84431 0.89536 0.90268 0.90852 0.90517 0.90097 0.89712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 8.97 60.07 0.54 0.91 16 2 N -0.51 -8.83 4.45 -244.38 -1.09 -9.92 16 3 C 0.05 0.85 5.45 -4.98 -0.03 0.82 16 4 C 0.45 10.84 7.47 -10.99 -0.08 10.76 16 5 O -0.57 -16.00 13.91 5.55 0.08 -15.92 16 6 N -0.57 -14.70 5.29 -10.96 -0.06 -14.75 16 7 C -0.30 -8.43 9.68 -14.93 -0.14 -8.57 16 8 H 0.10 3.08 7.16 -52.48 -0.38 2.71 16 9 C 0.02 0.56 5.50 -17.47 -0.10 0.46 16 10 N -0.90 -24.96 13.05 55.50 0.72 -24.23 16 11 Si 0.93 21.45 29.55 -169.99 -5.02 16.42 16 12 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 13 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 14 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 15 C 0.02 0.31 4.60 -3.83 -0.02 0.29 16 16 C 0.10 1.20 3.19 -26.74 -0.09 1.12 16 17 H 0.10 1.21 6.34 -51.93 -0.33 0.88 16 18 O -0.54 -8.32 12.10 -43.45 -0.53 -8.85 16 19 C 0.08 0.79 5.12 -4.05 -0.02 0.77 16 20 N -0.60 -5.88 2.83 -182.98 -0.52 -6.40 16 21 C 0.06 0.36 8.91 59.85 0.53 0.90 16 22 C 0.57 6.85 7.15 -12.67 -0.09 6.76 16 23 O -0.54 -8.13 15.17 -2.95 -0.04 -8.17 16 24 C -0.19 -1.79 5.94 -102.73 -0.61 -2.40 16 25 C -0.07 -0.62 10.43 -36.01 -0.38 -1.00 16 26 C -0.11 -0.60 6.81 -26.77 -0.18 -0.78 16 27 C -0.13 -0.60 7.17 -24.99 -0.18 -0.78 16 28 C -0.10 -0.55 4.44 -26.85 -0.12 -0.67 16 29 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.10 1.99 5.82 -51.93 -0.30 1.69 16 31 H 0.06 0.91 6.37 -51.93 -0.33 0.58 16 32 H 0.05 0.76 8.12 -51.93 -0.42 0.34 16 33 H 0.09 1.47 7.93 -51.93 -0.41 1.06 16 34 H 0.39 9.70 7.90 -40.82 -0.32 9.37 16 35 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 36 H 0.04 0.41 8.12 -51.93 -0.42 -0.01 16 37 H 0.08 0.95 7.93 -51.93 -0.41 0.54 16 38 H 0.37 5.42 8.46 45.56 0.39 5.80 16 39 H 0.08 0.61 8.07 -51.93 -0.42 0.19 16 40 H 0.09 0.93 7.41 -51.93 -0.38 0.55 16 41 H 0.06 0.27 7.07 -51.93 -0.37 -0.10 16 42 H 0.07 0.38 8.02 -51.93 -0.42 -0.04 16 43 H 0.09 0.50 4.16 -51.93 -0.22 0.29 16 44 H 0.14 1.25 8.04 -52.49 -0.42 0.82 16 45 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.08 0.36 8.14 -51.92 -0.42 -0.07 16 47 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 48 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 49 H 0.08 0.39 5.89 -51.93 -0.31 0.08 16 50 H 0.08 0.44 6.61 -51.93 -0.34 0.10 16 LS Contribution 396.94 15.07 5.98 5.98 Total: -1.00 -35.58 396.94 -8.50 -44.07 By element: Atomic # 1 Polarization: 20.24 SS G_CDS: -7.07 Total: 13.17 kcal Atomic # 6 Polarization: 9.56 SS G_CDS: -0.96 Total: 8.60 kcal Atomic # 7 Polarization: -54.37 SS G_CDS: -0.94 Total: -55.30 kcal Atomic # 8 Polarization: -32.45 SS G_CDS: -0.49 Total: -32.94 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -35.58 -8.50 -44.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571600502.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.115 kcal (2) G-P(sol) polarization free energy of solvation -35.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds