Wall clock time and date at job start Sat Apr 11 2020 05:50:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46901 * 110.99771 * 2 1 4 4 C 1.50701 * 109.47017 * 66.04727 * 3 2 1 5 5 O 1.21292 * 120.00149 * 359.97438 * 4 3 2 6 6 N 1.34775 * 119.99749 * 179.97438 * 4 3 2 7 7 C 1.37108 * 120.00046 * 179.97438 * 6 4 3 8 8 H 1.08001 * 119.99817 * 0.02562 * 7 6 4 9 9 C 1.38949 * 120.00155 * 179.97438 * 7 6 4 10 10 N 1.31407 * 119.99842 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 119.99991 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47341 * 59.99971 * 11 9 7 13 13 H 1.48502 * 109.47035 * 180.02562 * 11 9 7 14 14 H 1.48505 * 109.46911 * 300.00125 * 11 9 7 15 15 C 1.46895 * 110.99975 * 236.04588 * 2 1 3 16 16 C 1.53001 * 109.47303 * 293.95292 * 15 2 1 17 17 H 1.09000 * 109.46771 * 59.99791 * 16 15 2 18 18 O 1.42896 * 109.47201 * 300.00602 * 16 15 2 19 19 C 1.53001 * 109.47142 * 179.97438 * 16 15 2 20 20 N 1.46500 * 109.47055 * 184.99910 * 19 16 15 21 21 C 1.46491 * 120.00161 * 264.44008 * 20 19 16 22 22 C 1.34782 * 119.99503 * 84.43829 * 20 19 16 23 23 O 1.21614 * 119.99603 * 185.12256 * 22 20 19 24 24 C 1.47095 * 120.00033 * 5.12621 * 22 20 19 25 25 C 1.32618 * 124.61730 * 173.94826 * 24 22 20 26 26 C 1.51121 * 110.75693 * 179.84265 * 25 24 22 27 27 C 1.54571 * 104.90065 * 343.80424 * 26 25 24 28 28 C 1.51110 * 124.62585 * 354.24849 * 24 22 20 29 29 H 1.09001 * 109.47369 * 59.99597 * 1 2 3 30 30 H 1.08994 * 109.47325 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47401 * 300.00437 * 1 2 3 32 32 H 1.09004 * 109.47088 * 186.04319 * 3 2 1 33 33 H 1.08994 * 109.47490 * 306.04717 * 3 2 1 34 34 H 0.96998 * 120.00472 * 359.97438 * 6 4 3 35 35 H 0.97009 * 120.00031 * 179.97438 * 10 9 7 36 36 H 1.09000 * 109.47058 * 53.95913 * 15 2 1 37 37 H 1.09001 * 109.46653 * 173.95283 * 15 2 1 38 38 H 0.96706 * 113.99467 * 299.99573 * 18 16 15 39 39 H 1.08995 * 109.46899 * 305.00222 * 19 16 15 40 40 H 1.09002 * 109.46638 * 65.00457 * 19 16 15 41 41 H 1.09001 * 109.47201 * 95.01807 * 21 20 19 42 42 H 1.09000 * 109.47343 * 215.01666 * 21 20 19 43 43 H 1.08997 * 109.47576 * 335.01693 * 21 20 19 44 44 H 1.07993 * 124.62510 * 359.97438 * 25 24 22 45 45 H 1.09001 * 110.51300 * 224.85274 * 26 25 24 46 46 H 1.08991 * 110.14871 * 102.57556 * 26 25 24 47 47 H 1.08997 * 110.98760 * 266.70893 * 27 26 25 48 48 H 1.08996 * 110.98319 * 142.91308 * 27 26 25 49 49 H 1.08997 * 110.36130 * 315.44204 * 28 24 22 50 50 H 1.08999 * 110.36339 * 77.64809 * 28 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0471 1.2985 5 8 1.0046 1.4455 2.1408 6 7 2.0188 3.3198 1.5237 7 6 1.6921 3.9348 2.7048 8 1 1.1292 3.3991 3.4549 9 6 2.0863 5.2467 2.9373 10 7 2.7718 5.8983 2.0249 11 14 1.6420 6.0843 4.5468 12 1 2.2327 5.3263 5.6788 13 1 2.1746 7.4704 4.5470 14 1 0.1647 6.1221 4.6936 15 6 1.9954 -0.7660 -1.1375 16 6 1.6314 -2.2426 -0.9703 17 1 0.5472 -2.3475 -0.9322 18 8 2.2008 -2.7391 0.2427 19 6 2.1792 -3.0403 -2.1555 20 7 1.7300 -4.4312 -2.0573 21 6 2.5971 -5.4394 -1.4428 22 6 0.5188 -4.7833 -2.5324 23 8 0.1069 -5.9157 -2.3682 24 6 -0.3047 -3.7978 -3.2496 25 6 -1.4536 -4.0722 -3.8526 26 6 -2.0358 -2.8301 -4.4865 27 6 -1.2747 -1.6552 -3.8310 28 6 0.0461 -2.3363 -3.4053 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 3.0797 1.3445 -0.1082 33 1 1.5611 1.9274 -0.8308 34 1 2.5247 3.8008 0.8503 35 1 3.0467 6.8144 2.1870 36 1 1.5611 -0.3872 -2.0628 37 1 3.0797 -0.6610 -1.1755 38 1 3.1651 -2.6771 0.2787 39 1 1.8143 -2.6053 -3.0859 40 1 3.2687 -3.0085 -2.1422 41 1 2.3333 -5.5534 -0.3914 42 1 2.4664 -6.3924 -1.9555 43 1 3.6369 -5.1227 -1.5243 44 1 -1.9118 -5.0496 -3.8844 45 1 -3.1024 -2.7568 -4.2739 46 1 -1.8625 -2.8412 -5.5625 47 1 -1.8150 -1.2753 -2.9640 48 1 -1.0887 -0.8597 -4.5525 49 1 0.3955 -1.9271 -2.4574 50 1 0.8062 -2.2087 -4.1759 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571600503.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:22 Heat of formation + Delta-G solvation = -60.149451 kcal Electronic energy + Delta-G solvation = -30634.890431 eV Core-core repulsion = 26471.205464 eV Total energy + Delta-G solvation = -4163.684967 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -40.91818 -38.88698 -38.03592 -37.90516 -35.92873 -35.04935 -33.82927 -31.39236 -31.20056 -29.98992 -28.73190 -27.91315 -27.07408 -26.32845 -24.85157 -23.16318 -21.70721 -21.10707 -21.07594 -19.17392 -18.69113 -17.84451 -17.40046 -16.89156 -16.39723 -16.16167 -15.70504 -15.61455 -15.43537 -15.07841 -14.69204 -14.54217 -14.45596 -13.81799 -13.69031 -13.45745 -13.32385 -13.11063 -12.89738 -12.78124 -12.60596 -12.35167 -12.14522 -12.08983 -11.94747 -11.77665 -11.54767 -11.50137 -11.46293 -11.28220 -11.00280 -10.92727 -10.77225 -10.44088 -10.38341 -10.21148 -10.09360 -9.46731 -9.33145 -8.74747 -8.42199 -7.97546 -7.83642 -6.41839 -3.82445 1.08959 2.72298 3.01426 3.20136 3.25666 3.30244 3.80212 3.90997 4.06369 4.17058 4.21362 4.26378 4.52630 4.60035 4.65782 4.73230 4.86552 4.91438 4.99382 5.05391 5.13413 5.17026 5.24002 5.24177 5.28779 5.35615 5.39803 5.47633 5.52780 5.63626 5.65644 5.67182 5.67579 5.78975 5.81887 5.89904 5.93095 5.95461 6.20637 6.25912 6.27293 6.56637 7.08480 7.23004 7.33179 7.55196 7.69872 7.94384 8.06507 8.62267 9.18561 9.54608 10.06992 10.75937 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019068 B = 0.002326 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.050327 B =12036.853929 C =12823.680058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.505 5.505 3 C 0.046 3.954 4 C 0.444 3.556 5 O -0.574 6.574 6 N -0.565 5.565 7 C -0.298 4.298 8 H 0.102 0.898 9 C 0.022 3.978 10 N -0.904 5.904 11 Si 0.930 3.070 12 H -0.273 1.273 13 H -0.285 1.285 14 H -0.274 1.274 15 C 0.019 3.981 16 C 0.090 3.910 17 H 0.105 0.895 18 O -0.535 6.535 19 C 0.047 3.953 20 N -0.600 5.600 21 C 0.090 3.910 22 C 0.566 3.434 23 O -0.543 6.543 24 C -0.197 4.197 25 C -0.070 4.070 26 C -0.108 4.108 27 C -0.128 4.128 28 C -0.115 4.115 29 H 0.014 0.986 30 H 0.059 0.941 31 H 0.098 0.902 32 H 0.087 0.913 33 H 0.046 0.954 34 H 0.391 0.609 35 H 0.272 0.728 36 H 0.041 0.959 37 H 0.079 0.921 38 H 0.369 0.631 39 H 0.113 0.887 40 H 0.085 0.915 41 H 0.062 0.938 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.137 0.863 45 H 0.081 0.919 46 H 0.085 0.915 47 H 0.077 0.923 48 H 0.078 0.922 49 H 0.096 0.904 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.822 -15.566 -17.380 23.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.228 5.228 3 C -0.086 4.086 4 C 0.229 3.771 5 O -0.458 6.458 6 N -0.202 5.202 7 C -0.428 4.428 8 H 0.120 0.880 9 C -0.179 4.179 10 N -0.545 5.545 11 Si 0.757 3.243 12 H -0.199 1.199 13 H -0.210 1.210 14 H -0.199 1.199 15 C -0.111 4.111 16 C 0.029 3.971 17 H 0.123 0.877 18 O -0.338 6.338 19 C -0.077 4.077 20 N -0.332 5.332 21 C -0.052 4.052 22 C 0.356 3.644 23 O -0.422 6.422 24 C -0.200 4.200 25 C -0.089 4.089 26 C -0.145 4.145 27 C -0.165 4.165 28 C -0.151 4.151 29 H 0.032 0.968 30 H 0.077 0.923 31 H 0.116 0.884 32 H 0.105 0.895 33 H 0.064 0.936 34 H 0.224 0.776 35 H 0.081 0.919 36 H 0.059 0.941 37 H 0.097 0.903 38 H 0.215 0.785 39 H 0.130 0.870 40 H 0.103 0.897 41 H 0.080 0.920 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.155 0.845 45 H 0.100 0.900 46 H 0.103 0.897 47 H 0.095 0.905 48 H 0.097 0.903 49 H 0.113 0.887 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -1.826 -16.717 -16.121 23.296 hybrid contribution 0.622 1.398 -0.569 1.633 sum -1.203 -15.319 -16.690 22.687 Atomic orbital electron populations 1.22590 0.86755 1.01370 1.02010 1.61456 1.08634 1.12440 1.40297 1.21891 1.00553 0.88886 0.97221 1.19718 0.85496 0.82908 0.88944 1.90501 1.43708 1.64550 1.47045 1.41858 1.49521 1.10782 1.18066 1.19649 1.32886 0.95449 0.94779 0.87984 1.25244 0.96833 0.96649 0.99204 1.69602 1.38101 1.12302 1.34495 0.85928 0.78910 0.77909 0.81546 1.19877 1.21005 1.19934 1.22883 1.00992 0.94277 0.92918 1.22566 0.99233 0.90782 0.84496 0.87745 1.86707 1.24926 1.84764 1.37422 1.23223 1.00951 0.82098 1.01403 1.47477 1.17113 1.09153 1.59439 1.21649 0.93141 0.91689 0.98716 1.18008 0.80766 0.87150 0.78445 1.90782 1.71174 1.21311 1.58911 1.21772 0.98184 0.96042 1.03956 1.24075 0.93518 0.99462 0.91859 1.21497 1.00661 0.92021 1.00270 1.22513 0.95604 0.97289 1.01099 1.22147 0.98424 0.91534 1.02988 0.96787 0.92271 0.88395 0.89519 0.93571 0.77560 0.91861 0.94052 0.90263 0.78471 0.86997 0.89679 0.91985 0.91246 0.91200 0.84485 0.90018 0.89655 0.90459 0.90328 0.88657 0.89831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.01 60.06 0.54 0.87 16 2 N -0.50 -7.86 4.37 -244.37 -1.07 -8.93 16 3 C 0.05 0.77 5.45 -4.97 -0.03 0.75 16 4 C 0.44 10.26 7.51 -10.99 -0.08 10.18 16 5 O -0.57 -15.37 13.88 5.55 0.08 -15.29 16 6 N -0.57 -14.08 5.29 -10.96 -0.06 -14.14 16 7 C -0.30 -8.23 9.68 -14.93 -0.14 -8.38 16 8 H 0.10 2.96 7.16 -52.49 -0.38 2.59 16 9 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 10 N -0.90 -24.32 13.05 55.50 0.72 -23.60 16 11 Si 0.93 20.97 29.55 -169.99 -5.02 15.94 16 12 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 13 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 14 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 15 C 0.02 0.20 4.37 -3.83 -0.02 0.18 16 16 C 0.09 0.92 2.01 -26.73 -0.05 0.87 16 17 H 0.11 1.27 5.02 -51.93 -0.26 1.01 16 18 O -0.53 -6.61 13.09 -35.23 -0.46 -7.07 16 19 C 0.05 0.36 4.63 -4.04 -0.02 0.34 16 20 N -0.60 -6.08 2.83 -182.99 -0.52 -6.60 16 21 C 0.09 0.81 10.32 59.84 0.62 1.43 16 22 C 0.57 7.05 7.60 -12.67 -0.10 6.96 16 23 O -0.54 -8.62 16.50 5.27 0.09 -8.54 16 24 C -0.20 -1.96 5.93 -102.73 -0.61 -2.57 16 25 C -0.07 -0.61 10.44 -36.00 -0.38 -0.99 16 26 C -0.11 -0.70 6.80 -26.85 -0.18 -0.88 16 27 C -0.13 -0.87 7.16 -25.08 -0.18 -1.05 16 28 C -0.11 -0.87 4.32 -26.85 -0.12 -0.98 16 29 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.06 0.87 6.30 -51.93 -0.33 0.54 16 31 H 0.10 1.95 5.88 -51.93 -0.31 1.64 16 32 H 0.09 1.30 7.93 -51.93 -0.41 0.89 16 33 H 0.05 0.71 8.12 -51.93 -0.42 0.28 16 34 H 0.39 9.28 7.90 -40.82 -0.32 8.96 16 35 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 36 H 0.04 0.37 7.27 -51.93 -0.38 -0.01 16 37 H 0.08 0.71 7.93 -51.93 -0.41 0.30 16 38 H 0.37 3.29 9.05 45.56 0.41 3.70 16 39 H 0.11 0.73 3.65 -51.95 -0.19 0.54 16 40 H 0.08 0.48 7.79 -51.93 -0.40 0.07 16 41 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.07 0.67 7.66 -51.93 -0.40 0.27 16 43 H 0.07 0.43 7.79 -51.93 -0.40 0.03 16 44 H 0.14 1.22 8.04 -52.49 -0.42 0.80 16 45 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 47 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 49 H 0.10 0.79 2.07 -51.93 -0.11 0.68 16 50 H 0.08 0.50 6.93 -51.93 -0.36 0.14 16 LS Contribution 394.23 15.07 5.94 5.94 Total: -1.00 -35.26 394.23 -7.90 -43.16 By element: Atomic # 1 Polarization: 18.66 SS G_CDS: -6.76 Total: 11.90 kcal Atomic # 6 Polarization: 8.05 SS G_CDS: -0.84 Total: 7.21 kcal Atomic # 7 Polarization: -52.34 SS G_CDS: -0.92 Total: -53.26 kcal Atomic # 8 Polarization: -30.60 SS G_CDS: -0.30 Total: -30.90 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -35.26 -7.90 -43.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571600503.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.987 kcal (2) G-P(sol) polarization free energy of solvation -35.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds