Wall clock time and date at job start Sat Apr 11 2020 05:50:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46901 * 110.99771 * 2 1 4 4 C 1.50701 * 109.47017 * 66.04727 * 3 2 1 5 5 O 1.21292 * 120.00149 * 359.97438 * 4 3 2 6 6 N 1.34775 * 119.99749 * 179.97438 * 4 3 2 7 7 C 1.37108 * 120.00046 * 179.97438 * 6 4 3 8 8 H 1.08001 * 119.99817 * 0.02562 * 7 6 4 9 9 C 1.38949 * 120.00155 * 179.97438 * 7 6 4 10 10 N 1.31407 * 119.99842 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 119.99991 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47341 * 59.99971 * 11 9 7 13 13 H 1.48502 * 109.47035 * 180.02562 * 11 9 7 14 14 H 1.48505 * 109.46911 * 300.00125 * 11 9 7 15 15 C 1.46895 * 110.99975 * 236.04588 * 2 1 3 16 16 C 1.53001 * 109.47303 * 293.95292 * 15 2 1 17 17 H 1.09000 * 109.46771 * 59.99791 * 16 15 2 18 18 O 1.42896 * 109.47201 * 300.00602 * 16 15 2 19 19 C 1.53001 * 109.47142 * 179.97438 * 16 15 2 20 20 N 1.46500 * 109.47055 * 184.99910 * 19 16 15 21 21 C 1.46491 * 120.00161 * 264.44008 * 20 19 16 22 22 C 1.34782 * 119.99503 * 84.43829 * 20 19 16 23 23 O 1.21614 * 119.99603 * 185.12256 * 22 20 19 24 24 C 1.47095 * 120.00033 * 5.12621 * 22 20 19 25 25 C 1.32618 * 124.61730 * 173.94826 * 24 22 20 26 26 C 1.51121 * 110.75693 * 179.84265 * 25 24 22 27 27 C 1.54571 * 104.90065 * 343.80424 * 26 25 24 28 28 C 1.51110 * 124.62585 * 354.24849 * 24 22 20 29 29 H 1.09001 * 109.47369 * 59.99597 * 1 2 3 30 30 H 1.08994 * 109.47325 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47401 * 300.00437 * 1 2 3 32 32 H 1.09004 * 109.47088 * 186.04319 * 3 2 1 33 33 H 1.08994 * 109.47490 * 306.04717 * 3 2 1 34 34 H 0.96998 * 120.00472 * 359.97438 * 6 4 3 35 35 H 0.97009 * 120.00031 * 179.97438 * 10 9 7 36 36 H 1.09000 * 109.47058 * 53.95913 * 15 2 1 37 37 H 1.09001 * 109.46653 * 173.95283 * 15 2 1 38 38 H 0.96706 * 113.99467 * 299.99573 * 18 16 15 39 39 H 1.08995 * 109.46899 * 305.00222 * 19 16 15 40 40 H 1.09002 * 109.46638 * 65.00457 * 19 16 15 41 41 H 1.09001 * 109.47201 * 95.01807 * 21 20 19 42 42 H 1.09000 * 109.47343 * 215.01666 * 21 20 19 43 43 H 1.08997 * 109.47576 * 335.01693 * 21 20 19 44 44 H 1.07993 * 124.62510 * 359.97438 * 25 24 22 45 45 H 1.09001 * 110.51300 * 224.85274 * 26 25 24 46 46 H 1.08991 * 110.14871 * 102.57556 * 26 25 24 47 47 H 1.08997 * 110.98760 * 266.70893 * 27 26 25 48 48 H 1.08996 * 110.98319 * 142.91308 * 27 26 25 49 49 H 1.08997 * 110.36130 * 315.44204 * 28 24 22 50 50 H 1.08999 * 110.36339 * 77.64809 * 28 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0471 1.2985 5 8 1.0046 1.4455 2.1408 6 7 2.0188 3.3198 1.5237 7 6 1.6921 3.9348 2.7048 8 1 1.1292 3.3991 3.4549 9 6 2.0863 5.2467 2.9373 10 7 2.7718 5.8983 2.0249 11 14 1.6420 6.0843 4.5468 12 1 2.2327 5.3263 5.6788 13 1 2.1746 7.4704 4.5470 14 1 0.1647 6.1221 4.6936 15 6 1.9954 -0.7660 -1.1375 16 6 1.6314 -2.2426 -0.9703 17 1 0.5472 -2.3475 -0.9322 18 8 2.2008 -2.7391 0.2427 19 6 2.1792 -3.0403 -2.1555 20 7 1.7300 -4.4312 -2.0573 21 6 2.5971 -5.4394 -1.4428 22 6 0.5188 -4.7833 -2.5324 23 8 0.1069 -5.9157 -2.3682 24 6 -0.3047 -3.7978 -3.2496 25 6 -1.4536 -4.0722 -3.8526 26 6 -2.0358 -2.8301 -4.4865 27 6 -1.2747 -1.6552 -3.8310 28 6 0.0461 -2.3363 -3.4053 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 3.0797 1.3445 -0.1082 33 1 1.5611 1.9274 -0.8308 34 1 2.5247 3.8008 0.8503 35 1 3.0467 6.8144 2.1870 36 1 1.5611 -0.3872 -2.0628 37 1 3.0797 -0.6610 -1.1755 38 1 3.1651 -2.6771 0.2787 39 1 1.8143 -2.6053 -3.0859 40 1 3.2687 -3.0085 -2.1422 41 1 2.3333 -5.5534 -0.3914 42 1 2.4664 -6.3924 -1.9555 43 1 3.6369 -5.1227 -1.5243 44 1 -1.9118 -5.0496 -3.8844 45 1 -3.1024 -2.7568 -4.2739 46 1 -1.8625 -2.8412 -5.5625 47 1 -1.8150 -1.2753 -2.9640 48 1 -1.0887 -0.8597 -4.5525 49 1 0.3955 -1.9271 -2.4574 50 1 0.8062 -2.2087 -4.1759 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571600503.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:20 Heat of formation + Delta-G solvation = -88.607523 kcal Electronic energy + Delta-G solvation = -30636.124466 eV Core-core repulsion = 26471.205464 eV Total energy + Delta-G solvation = -4164.919002 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.69775 -40.35672 -39.15501 -38.69747 -37.11991 -36.03365 -35.72299 -33.24517 -32.16201 -30.67807 -29.59595 -29.13844 -27.85836 -27.25619 -26.54845 -24.33227 -22.36945 -22.02985 -21.75343 -20.93089 -19.82901 -19.44804 -18.23538 -17.72716 -17.60271 -17.19791 -16.78214 -16.55365 -16.47851 -16.31901 -15.99887 -15.87144 -15.42591 -15.19899 -15.01429 -14.86601 -14.26907 -14.00395 -13.75652 -13.64821 -13.47191 -13.40710 -13.28991 -13.03928 -12.95846 -12.82306 -12.66251 -12.63401 -12.48959 -12.47253 -12.39699 -12.11655 -12.06647 -11.82871 -11.43253 -11.42736 -11.24596 -10.98478 -10.23310 -10.03105 -9.96248 -9.48738 -9.05650 -8.43928 -5.91738 0.33678 1.40630 1.42405 1.52750 1.96958 2.11389 2.18353 2.30606 2.78447 3.23484 3.33756 3.45889 3.57280 3.62624 3.80851 3.93525 4.01930 4.10734 4.17461 4.25965 4.29808 4.35783 4.41567 4.46252 4.56691 4.58613 4.60363 4.63512 4.70682 4.73182 4.76075 4.84297 4.91383 4.92782 4.96887 4.99478 5.17871 5.24291 5.28009 5.34836 5.43652 5.51754 5.53930 5.92394 6.11333 6.24549 6.32938 6.65529 7.01062 7.07530 7.17435 7.61938 8.19236 8.73242 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019068 B = 0.002326 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.050327 B =12036.853929 C =12823.680058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.529 5.529 3 C 0.060 3.940 4 C 0.440 3.560 5 O -0.617 6.617 6 N -0.576 5.576 7 C -0.331 4.331 8 H 0.075 0.925 9 C -0.012 4.012 10 N -0.920 5.920 11 Si 0.988 3.012 12 H -0.274 1.274 13 H -0.270 1.270 14 H -0.273 1.273 15 C 0.022 3.978 16 C 0.095 3.905 17 H 0.081 0.919 18 O -0.564 6.564 19 C 0.051 3.949 20 N -0.598 5.598 21 C 0.088 3.912 22 C 0.553 3.447 23 O -0.594 6.594 24 C -0.216 4.216 25 C -0.070 4.070 26 C -0.103 4.103 27 C -0.127 4.127 28 C -0.109 4.109 29 H 0.036 0.964 30 H 0.064 0.936 31 H 0.049 0.951 32 H 0.114 0.886 33 H 0.071 0.929 34 H 0.396 0.604 35 H 0.277 0.723 36 H 0.069 0.931 37 H 0.104 0.896 38 H 0.383 0.617 39 H 0.131 0.869 40 H 0.117 0.883 41 H 0.044 0.956 42 H 0.057 0.943 43 H 0.105 0.895 44 H 0.127 0.873 45 H 0.088 0.912 46 H 0.105 0.895 47 H 0.066 0.934 48 H 0.098 0.902 49 H 0.090 0.910 50 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.507 -14.403 -19.633 24.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.253 5.253 3 C -0.071 4.071 4 C 0.227 3.773 5 O -0.503 6.503 6 N -0.214 5.214 7 C -0.461 4.461 8 H 0.093 0.907 9 C -0.211 4.211 10 N -0.561 5.561 11 Si 0.812 3.188 12 H -0.199 1.199 13 H -0.194 1.194 14 H -0.199 1.199 15 C -0.106 4.106 16 C 0.035 3.965 17 H 0.098 0.902 18 O -0.370 6.370 19 C -0.071 4.071 20 N -0.327 5.327 21 C -0.054 4.054 22 C 0.345 3.655 23 O -0.477 6.477 24 C -0.219 4.219 25 C -0.090 4.090 26 C -0.139 4.139 27 C -0.165 4.165 28 C -0.145 4.145 29 H 0.055 0.945 30 H 0.082 0.918 31 H 0.068 0.932 32 H 0.132 0.868 33 H 0.089 0.911 34 H 0.230 0.770 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.122 0.878 38 H 0.231 0.769 39 H 0.149 0.851 40 H 0.135 0.865 41 H 0.063 0.937 42 H 0.076 0.924 43 H 0.123 0.877 44 H 0.145 0.855 45 H 0.107 0.893 46 H 0.123 0.877 47 H 0.085 0.915 48 H 0.117 0.883 49 H 0.108 0.892 50 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -0.453 -15.530 -18.403 24.084 hybrid contribution 0.181 0.931 0.133 0.958 sum -0.271 -14.599 -18.269 23.388 Atomic orbital electron populations 1.22371 0.87576 1.01276 1.00656 1.61341 1.08227 1.12003 1.43721 1.21759 1.02298 0.89414 0.93669 1.20931 0.83543 0.82124 0.90663 1.90486 1.45126 1.65392 1.49271 1.41925 1.50216 1.11670 1.17558 1.19576 1.34271 0.96384 0.95837 0.90661 1.25954 0.96377 0.96629 1.02179 1.69653 1.38169 1.12672 1.35647 0.85058 0.78561 0.77382 0.77763 1.19915 1.19426 1.19873 1.22981 1.02420 0.93217 0.92006 1.22518 0.98021 0.91171 0.84798 0.90152 1.86676 1.26386 1.85122 1.38860 1.23346 1.02741 0.80200 1.00836 1.47615 1.16463 1.10379 1.58264 1.21722 0.94830 0.91480 0.97391 1.18571 0.81518 0.87023 0.78432 1.90742 1.72409 1.23420 1.61098 1.21880 0.98483 0.97051 1.04511 1.24332 0.93200 1.00188 0.91273 1.21536 1.00862 0.90465 1.01075 1.22545 0.95025 0.97697 1.01196 1.22153 0.99491 0.89482 1.03395 0.94529 0.91768 0.93190 0.86772 0.91120 0.76970 0.91356 0.91281 0.87763 0.76861 0.85143 0.86492 0.93687 0.92406 0.87674 0.85525 0.89328 0.87726 0.91541 0.88326 0.89242 0.87449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.91 9.01 127.69 1.15 2.06 16 2 N -0.53 -15.35 4.37 -927.06 -4.05 -19.40 16 3 C 0.06 1.86 5.45 85.56 0.47 2.33 16 4 C 0.44 20.36 7.51 87.66 0.66 21.02 16 5 O -0.62 -34.03 13.88 -3.07 -0.04 -34.07 16 6 N -0.58 -28.88 5.29 -306.98 -1.62 -30.50 16 7 C -0.33 -18.67 9.68 84.04 0.81 -17.85 16 8 H 0.08 4.57 7.16 -2.91 -0.02 4.54 16 9 C -0.01 -0.62 5.50 84.93 0.47 -0.16 16 10 N -0.92 -48.94 13.05 21.66 0.28 -48.66 16 11 Si 0.99 42.84 29.55 68.60 2.03 44.87 16 12 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 13 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 14 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 15 C 0.02 0.37 4.37 86.30 0.38 0.75 16 16 C 0.10 1.73 2.01 30.60 0.06 1.79 16 17 H 0.08 1.87 5.02 -2.39 -0.01 1.86 16 18 O -0.56 -13.17 13.09 -148.98 -1.95 -15.12 16 19 C 0.05 0.62 4.63 86.38 0.40 1.02 16 20 N -0.60 -11.36 2.83 -851.10 -2.41 -13.77 16 21 C 0.09 1.52 10.32 127.77 1.32 2.84 16 22 C 0.55 13.82 7.60 86.57 0.66 14.47 16 23 O -0.59 -19.82 16.50 -4.07 -0.07 -19.89 16 24 C -0.22 -4.09 5.93 -18.57 -0.11 -4.20 16 25 C -0.07 -1.20 10.44 24.66 0.26 -0.94 16 26 C -0.10 -1.10 6.80 30.52 0.21 -0.89 16 27 C -0.13 -1.36 7.16 31.67 0.23 -1.14 16 28 C -0.11 -1.33 4.32 30.51 0.13 -1.20 16 29 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.06 1.88 6.30 -2.39 -0.02 1.87 16 31 H 0.05 2.04 5.88 -2.38 -0.01 2.03 16 32 H 0.11 2.98 7.93 -2.39 -0.02 2.96 16 33 H 0.07 1.90 8.12 -2.39 -0.02 1.88 16 34 H 0.40 18.66 7.90 -92.71 -0.73 17.93 16 35 H 0.28 13.84 8.31 -92.70 -0.77 13.07 16 36 H 0.07 0.86 7.27 -2.39 -0.02 0.84 16 37 H 0.10 1.32 7.93 -2.39 -0.02 1.30 16 38 H 0.38 5.98 9.05 -74.05 -0.67 5.31 16 39 H 0.13 1.13 3.65 -2.41 -0.01 1.12 16 40 H 0.12 0.72 7.79 -2.39 -0.02 0.70 16 41 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.06 1.13 7.66 -2.39 -0.02 1.11 16 43 H 0.10 1.02 7.79 -2.39 -0.02 1.01 16 44 H 0.13 2.35 8.04 -2.91 -0.02 2.32 16 45 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 46 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 47 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 48 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 49 H 0.09 1.21 2.07 -2.39 0.00 1.20 16 50 H 0.11 0.79 6.93 -2.39 -0.02 0.77 16 Total: -1.00 -81.17 394.23 -1.16 -82.33 By element: Atomic # 1 Polarization: 34.73 SS G_CDS: -0.41 Total: 34.31 kcal Atomic # 6 Polarization: 12.82 SS G_CDS: 7.08 Total: 19.90 kcal Atomic # 7 Polarization: -104.53 SS G_CDS: -7.80 Total: -112.33 kcal Atomic # 8 Polarization: -67.02 SS G_CDS: -2.06 Total: -69.08 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Total: -81.17 -1.16 -82.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571600503.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.277 kcal (2) G-P(sol) polarization free energy of solvation -81.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds