Wall clock time and date at job start Sat Apr 11 2020 05:47:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.44768 * 111.00307 * 2 1 4 4 C 1.54022 * 109.68243 * 142.14440 * 3 2 1 5 5 N 1.47778 * 111.55741 * 39.99711 * 4 3 2 6 6 C 1.34777 * 118.54971 * 221.88502 * 5 4 3 7 7 O 1.21586 * 119.99920 * 4.81252 * 6 5 4 8 8 N 1.34777 * 119.99908 * 184.79999 * 6 5 4 9 9 C 1.46501 * 119.99687 * 174.85757 * 8 6 5 10 10 H 1.08998 * 110.05893 * 325.04730 * 9 8 6 11 11 C 1.54280 * 110.02852 * 86.46057 * 9 8 6 12 12 C 1.54889 * 104.30960 * 95.60669 * 11 9 8 13 13 C 1.55242 * 102.58926 * 37.93485 * 12 11 9 14 14 H 1.09001 * 110.46730 * 80.77038 * 13 12 11 15 15 C 1.50696 * 110.46819 * 203.38932 * 13 12 11 16 16 H 1.08003 * 119.99822 * 114.80206 * 15 13 12 17 17 C 1.37876 * 120.00476 * 294.81093 * 15 13 12 18 18 N 1.31510 * 120.00403 * 179.97438 * 17 15 13 19 19 Si 1.86805 * 119.99370 * 359.97438 * 17 15 13 20 20 H 1.48495 * 109.47190 * 90.00870 * 19 17 15 21 21 H 1.48507 * 109.46537 * 209.99956 * 19 17 15 22 22 H 1.48493 * 109.47581 * 330.00118 * 19 17 15 23 23 C 1.53874 * 110.03809 * 203.62610 * 9 8 6 24 24 C 1.44679 * 122.90447 * 42.16819 * 5 4 3 25 25 C 1.55511 * 109.22155 * 270.76958 * 24 5 4 26 26 H 1.09005 * 109.47171 * 309.37704 * 25 24 5 27 27 C 1.50699 * 109.31477 * 189.52202 * 25 24 5 28 28 O 1.20826 * 119.99957 * 239.77517 * 27 25 24 29 29 O 1.34226 * 119.99803 * 59.78085 * 27 25 24 30 30 C 1.46264 * 111.00141 * 236.52261 * 2 1 3 31 31 H 1.09004 * 109.47172 * 56.04563 * 1 2 3 32 32 H 1.08996 * 109.46939 * 176.04543 * 1 2 3 33 33 H 1.09002 * 109.46700 * 296.04428 * 1 2 3 34 34 H 1.09006 * 109.43023 * 22.08133 * 3 2 1 35 35 H 1.08995 * 109.40223 * 262.19501 * 3 2 1 36 36 H 1.08995 * 109.06507 * 279.46010 * 4 3 2 37 37 H 1.09000 * 109.00416 * 160.49051 * 4 3 2 38 38 H 0.96999 * 120.00277 * 354.87217 * 8 6 5 39 39 H 1.09000 * 110.48361 * 214.35113 * 11 9 8 40 40 H 1.08998 * 110.48400 * 336.86554 * 11 9 8 41 41 H 1.09000 * 110.75197 * 156.32161 * 12 11 9 42 42 H 1.08994 * 110.76037 * 279.69206 * 12 11 9 43 43 H 0.96992 * 120.00355 * 179.97438 * 18 17 15 44 44 H 1.09007 * 110.02511 * 0.02562 * 23 9 8 45 45 H 1.08994 * 110.03203 * 121.38423 * 23 9 8 46 46 H 1.09003 * 109.46565 * 30.66194 * 24 5 4 47 47 H 1.08999 * 109.46382 * 150.63381 * 24 5 4 48 48 H 0.96709 * 116.99555 * 179.97438 * 29 27 25 49 49 H 1.09003 * 108.49860 * 332.71103 * 30 2 1 50 50 H 1.08998 * 108.50425 * 90.17957 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9879 1.3515 0.0000 4 6 3.2428 1.4254 0.8900 5 7 4.0973 0.2313 0.7238 6 6 4.6483 -0.3242 1.8213 7 8 4.3687 0.1032 2.9246 8 7 5.5091 -1.3536 1.6956 9 6 6.1943 -1.8839 2.8770 10 1 6.4168 -1.0761 3.5741 11 6 5.3142 -2.9482 3.5649 12 6 5.8271 -4.2946 2.9965 13 6 7.3594 -4.0623 2.9068 14 1 7.8248 -4.2082 3.8816 15 6 7.9732 -4.9839 1.8847 16 1 8.4229 -4.5765 0.9912 17 6 7.9606 -6.3473 2.0899 18 7 8.4958 -7.1516 1.1976 19 14 7.1833 -7.0519 3.6355 20 1 5.7456 -7.3267 3.3854 21 1 7.8718 -8.3150 4.0040 22 1 7.3147 -6.0744 4.7455 23 6 7.4946 -2.5924 2.4587 24 6 4.3734 -0.3644 -0.5654 25 6 3.2817 -1.4251 -0.8837 26 1 3.1757 -2.1029 -0.0366 27 6 3.6890 -2.2087 -2.1048 28 8 2.9830 -2.2096 -3.0853 29 8 4.8361 -2.9058 -2.1030 30 6 1.9932 -0.7532 -1.1390 31 1 -0.3634 0.5740 -0.8525 32 1 -0.3633 -1.0252 -0.0709 33 1 -0.3633 0.4512 0.9233 34 1 1.2285 2.0314 0.3864 35 1 2.2480 1.6395 -1.0185 36 1 2.9356 1.5010 1.9330 37 1 3.8158 2.3132 0.6225 38 1 5.6752 -1.7433 0.8229 39 1 5.4494 -2.9141 4.6459 40 1 4.2655 -2.8002 3.3075 41 1 5.5973 -5.1140 3.6776 42 1 5.4063 -4.4824 2.0088 43 1 8.4873 -8.1106 1.3421 44 1 7.6161 -2.5412 1.3766 45 1 8.3482 -2.1278 2.9521 46 1 4.3637 0.4096 -1.3328 47 1 5.3535 -0.8409 -0.5429 48 1 5.0548 -3.3931 -2.9092 49 1 1.2595 -1.5082 -1.4215 50 1 2.1202 -0.0686 -1.9775 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001606234805.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:18 Heat of formation + Delta-G solvation = -123.281913 kcal Electronic energy + Delta-G solvation = -31902.682977 eV Core-core repulsion = 27736.260381 eV Total energy + Delta-G solvation = -4166.422596 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.05613 -41.10929 -39.62406 -38.66409 -37.17036 -36.29478 -35.18605 -34.16877 -33.73028 -30.61967 -29.96248 -28.85499 -27.57528 -26.46633 -25.51730 -24.53682 -22.80516 -21.46255 -21.27549 -21.00195 -20.42215 -19.16906 -19.01005 -18.88913 -18.04588 -17.81440 -16.87028 -16.76800 -16.47397 -16.20015 -16.00385 -15.73530 -15.47310 -15.26025 -14.77107 -14.68116 -14.62312 -14.28393 -14.11143 -14.02172 -13.88967 -13.52782 -13.09174 -12.91465 -12.82082 -12.64260 -12.58302 -12.53374 -12.47462 -12.24085 -12.03490 -11.96263 -11.76431 -11.63586 -11.56895 -11.45978 -11.24029 -11.07446 -10.93477 -10.63029 -10.04378 -9.48461 -9.31180 -8.22566 -6.23310 1.05970 1.36403 1.40242 1.49392 1.62462 2.01394 2.23150 2.39328 2.97254 3.08778 3.13619 3.48570 3.64336 3.89234 3.95282 3.96176 4.04043 4.18942 4.21090 4.22271 4.24045 4.43142 4.54302 4.58795 4.69173 4.69995 4.73227 4.78665 4.79824 4.80200 4.85975 4.98382 4.99062 5.02358 5.04535 5.06861 5.19080 5.30569 5.50969 5.55647 5.59761 5.70854 5.73784 5.85208 5.95869 6.03606 6.15697 6.40026 6.82910 6.93200 7.03949 7.41747 7.65130 8.93682 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012867 B = 0.003737 C = 0.003265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2175.526500 B = 7491.111440 C = 8573.020091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.553 5.553 3 C 0.045 3.955 4 C 0.134 3.866 5 N -0.606 5.606 6 C 0.702 3.298 7 O -0.626 6.626 8 N -0.729 5.729 9 C 0.169 3.831 10 H 0.081 0.919 11 C -0.122 4.122 12 C -0.122 4.122 13 C 0.005 3.995 14 H 0.031 0.969 15 C -0.501 4.501 16 H 0.042 0.958 17 C 0.017 3.983 18 N -0.950 5.950 19 Si 0.932 3.068 20 H -0.272 1.272 21 H -0.299 1.299 22 H -0.246 1.246 23 C -0.103 4.103 24 C 0.128 3.872 25 C -0.095 4.095 26 H 0.104 0.896 27 C 0.498 3.502 28 O -0.542 6.542 29 O -0.508 6.508 30 C 0.076 3.924 31 H 0.040 0.960 32 H 0.063 0.937 33 H 0.077 0.923 34 H 0.101 0.899 35 H 0.062 0.938 36 H 0.074 0.926 37 H 0.083 0.917 38 H 0.403 0.597 39 H 0.072 0.928 40 H 0.057 0.943 41 H 0.039 0.961 42 H 0.054 0.946 43 H 0.262 0.738 44 H 0.065 0.935 45 H 0.072 0.928 46 H 0.108 0.892 47 H 0.092 0.908 48 H 0.430 0.570 49 H 0.067 0.933 50 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.156 18.445 -5.667 23.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.276 5.276 3 C -0.084 4.084 4 C 0.011 3.989 5 N -0.341 5.341 6 C 0.404 3.596 7 O -0.508 6.508 8 N -0.385 5.385 9 C 0.063 3.937 10 H 0.099 0.901 11 C -0.161 4.161 12 C -0.160 4.160 13 C -0.014 4.014 14 H 0.049 0.951 15 C -0.539 4.539 16 H 0.060 0.940 17 C -0.180 4.180 18 N -0.591 5.591 19 Si 0.759 3.241 20 H -0.198 1.198 21 H -0.227 1.227 22 H -0.170 1.170 23 C -0.141 4.141 24 C 0.003 3.997 25 C -0.117 4.117 26 H 0.122 0.878 27 C 0.340 3.660 28 O -0.433 6.433 29 O -0.322 6.322 30 C -0.052 4.052 31 H 0.059 0.941 32 H 0.082 0.918 33 H 0.096 0.904 34 H 0.119 0.881 35 H 0.080 0.920 36 H 0.093 0.907 37 H 0.101 0.899 38 H 0.241 0.759 39 H 0.091 0.909 40 H 0.076 0.924 41 H 0.057 0.943 42 H 0.073 0.927 43 H 0.071 0.929 44 H 0.084 0.916 45 H 0.091 0.909 46 H 0.126 0.874 47 H 0.110 0.890 48 H 0.293 0.707 49 H 0.086 0.914 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.443 18.616 -4.408 23.971 hybrid contribution -0.218 -1.443 -1.242 1.916 sum -14.661 17.174 -5.650 23.277 Atomic orbital electron populations 1.22462 0.85018 1.02278 1.01744 1.60578 1.09061 1.14714 1.43280 1.22496 0.96777 0.89357 0.99757 1.21959 0.90305 0.85110 1.01544 1.46699 1.51445 1.31400 1.04513 1.16094 0.79140 0.79939 0.84459 1.90849 1.66712 1.67255 1.25947 1.45544 1.46213 1.35112 1.11652 1.21346 0.91127 0.94972 0.86223 0.90078 1.22685 0.98762 0.94642 0.99976 1.22821 0.98016 0.95901 0.99282 1.20028 0.92282 0.93266 0.95784 0.95099 1.21344 1.35920 0.91109 1.05569 0.93994 1.25723 0.95657 0.97771 0.98855 1.70030 1.47831 1.03933 1.37338 0.86043 0.78604 0.77617 0.81817 1.19760 1.22659 1.16970 1.22281 0.95563 0.94894 1.01328 1.21593 0.96373 0.95433 0.86323 1.20886 0.98438 0.97983 0.94373 0.87754 1.23113 0.78078 0.76396 0.88373 1.90711 1.53633 1.62395 1.36534 1.84553 1.39441 1.60256 1.47930 1.20626 0.94679 0.98368 0.91543 0.94150 0.91794 0.90388 0.88078 0.92017 0.90743 0.89893 0.75909 0.90902 0.92406 0.94281 0.92682 0.92880 0.91594 0.90885 0.87391 0.89018 0.70736 0.91401 0.92754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 9.20 127.69 1.18 1.61 16 2 N -0.55 -9.37 4.41 -938.27 -4.14 -13.51 16 3 C 0.05 0.59 5.52 87.05 0.48 1.07 16 4 C 0.13 2.33 6.48 86.48 0.56 2.89 16 5 N -0.61 -12.98 2.52 -834.01 -2.10 -15.08 16 6 C 0.70 20.53 8.20 179.05 1.47 22.00 16 7 O -0.63 -22.82 15.34 -3.99 -0.06 -22.88 16 8 N -0.73 -21.00 4.87 -454.33 -2.21 -23.22 16 9 C 0.17 5.46 3.19 45.72 0.15 5.60 16 10 H 0.08 2.64 7.69 -2.39 -0.02 2.62 16 11 C -0.12 -4.19 6.52 31.67 0.21 -3.98 16 12 C -0.12 -4.93 5.32 32.01 0.17 -4.76 16 13 C 0.01 0.24 2.28 -10.34 -0.02 0.21 16 14 H 0.03 1.38 7.06 -2.39 -0.02 1.36 16 15 C -0.50 -27.00 9.05 25.60 0.23 -26.77 16 16 H 0.04 2.46 7.79 -2.91 -0.02 2.44 16 17 C 0.02 0.94 5.46 84.66 0.46 1.40 16 18 N -0.95 -57.95 13.96 21.45 0.30 -57.65 16 19 Si 0.93 44.16 24.65 68.60 1.69 45.85 16 20 H -0.27 -12.49 7.10 99.48 0.71 -11.79 16 21 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 22 H -0.25 -10.83 6.47 99.48 0.64 -10.19 16 23 C -0.10 -3.65 6.13 31.32 0.19 -3.46 16 24 C 0.13 2.22 4.62 87.58 0.40 2.62 16 25 C -0.10 -1.85 2.80 -12.38 -0.03 -1.88 16 26 H 0.10 2.45 8.14 -2.38 -0.02 2.43 16 27 C 0.50 10.48 7.61 71.24 0.54 11.02 16 28 O -0.54 -13.82 16.59 21.96 0.36 -13.45 16 29 O -0.51 -9.98 13.19 -51.38 -0.68 -10.66 16 30 C 0.08 1.35 3.60 84.72 0.30 1.66 16 31 H 0.04 0.44 8.13 -2.39 -0.02 0.42 16 32 H 0.06 0.92 7.83 -2.39 -0.02 0.90 16 33 H 0.08 0.96 8.13 -2.39 -0.02 0.94 16 34 H 0.10 0.97 7.63 -2.38 -0.02 0.95 16 35 H 0.06 0.64 7.14 -2.39 -0.02 0.62 16 36 H 0.07 1.68 6.92 -2.39 -0.02 1.67 16 37 H 0.08 1.11 8.14 -2.39 -0.02 1.10 16 38 H 0.40 10.75 5.85 -92.71 -0.54 10.21 16 39 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 40 H 0.06 2.00 8.04 -2.39 -0.02 1.98 16 41 H 0.04 1.61 5.30 -2.39 -0.01 1.59 16 42 H 0.05 2.31 8.05 -2.39 -0.02 2.29 16 43 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 44 H 0.07 2.38 7.12 -2.38 -0.02 2.36 16 45 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 46 H 0.11 1.37 8.10 -2.39 -0.02 1.35 16 47 H 0.09 1.64 5.82 -2.39 -0.01 1.62 16 48 H 0.43 5.38 9.10 -74.05 -0.67 4.70 16 49 H 0.07 1.33 7.25 -2.39 -0.02 1.31 16 50 H 0.05 0.89 7.11 -2.39 -0.02 0.87 16 Total: -1.00 -73.16 383.12 -0.87 -74.03 By element: Atomic # 1 Polarization: 27.64 SS G_CDS: -0.31 Total: 27.33 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: 6.29 Total: 9.24 kcal Atomic # 7 Polarization: -101.30 SS G_CDS: -8.16 Total: -109.46 kcal Atomic # 8 Polarization: -46.61 SS G_CDS: -0.37 Total: -46.99 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 1.69 Total: 45.85 kcal Total: -73.16 -0.87 -74.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606234805.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.256 kcal (2) G-P(sol) polarization free energy of solvation -73.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds