Wall clock time and date at job start Sat Apr 11 2020 05:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46498 * 120.00028 * 2 1 4 4 C 1.53004 * 109.46933 * 84.36304 * 3 2 1 5 5 H 1.08991 * 112.78006 * 316.23261 * 4 3 2 6 6 C 1.53754 * 113.55238 * 87.09230 * 4 3 2 7 7 C 1.53496 * 83.25808 * 140.98316 * 6 4 3 8 8 N 1.47069 * 87.98784 * 333.76422 * 7 6 4 9 9 C 1.36934 * 136.05813 * 207.08833 * 8 7 6 10 10 H 1.08009 * 119.99607 * 172.13701 * 9 8 7 11 11 C 1.38807 * 120.00007 * 351.85766 * 9 8 7 12 12 N 1.31613 * 120.00127 * 0.27757 * 11 9 8 13 13 Si 1.86802 * 119.99886 * 180.27667 * 11 9 8 14 14 H 1.48501 * 109.47329 * 60.00159 * 13 11 9 15 15 H 1.48497 * 109.47030 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47295 * 300.00334 * 13 11 9 17 17 C 1.34775 * 119.99621 * 179.97438 * 2 1 3 18 18 O 1.21283 * 120.00102 * 179.97438 * 17 2 1 19 19 C 1.50695 * 120.00348 * 0.02562 * 17 2 1 20 20 C 1.53001 * 109.47378 * 179.97438 * 19 17 2 21 21 C 1.50700 * 109.47058 * 179.97438 * 20 19 17 22 22 O 1.21285 * 120.00248 * 359.97438 * 21 20 19 23 23 N 1.34780 * 119.99697 * 179.97438 * 21 20 19 24 24 C 1.47151 * 120.98488 * 359.71778 * 23 21 20 25 25 C 1.53714 * 108.16290 * 129.43180 * 24 23 21 26 26 O 1.42965 * 109.14658 * 52.53869 * 25 24 23 27 27 C 1.42968 * 114.16558 * 297.28828 * 26 25 24 28 28 C 1.47156 * 120.97748 * 180.02562 * 23 21 20 29 29 H 1.09003 * 109.46576 * 90.22285 * 1 2 3 30 30 H 1.08998 * 109.47217 * 210.21655 * 1 2 3 31 31 H 1.08998 * 109.47183 * 330.22468 * 1 2 3 32 32 H 1.08993 * 109.47200 * 324.35919 * 3 2 1 33 33 H 1.09004 * 109.47038 * 204.35858 * 3 2 1 34 34 H 1.09002 * 114.39426 * 27.42443 * 6 4 3 35 35 H 1.08999 * 114.26870 * 254.53490 * 6 4 3 36 36 H 1.09002 * 113.46916 * 218.98183 * 7 6 4 37 37 H 1.09005 * 113.52179 * 88.54961 * 7 6 4 38 38 H 0.97005 * 120.00306 * 179.97438 * 12 11 9 39 39 H 1.09003 * 109.46962 * 299.99549 * 19 17 2 40 40 H 1.08997 * 109.47314 * 59.99685 * 19 17 2 41 41 H 1.08998 * 109.47278 * 299.99904 * 20 19 17 42 42 H 1.09005 * 109.47225 * 59.99981 * 20 19 17 43 43 H 1.08993 * 109.68217 * 249.21041 * 24 23 21 44 44 H 1.09001 * 109.67570 * 9.76487 * 24 23 21 45 45 H 1.09006 * 109.65742 * 292.57380 * 25 24 23 46 46 H 1.08999 * 109.48634 * 172.40242 * 25 24 23 47 47 H 1.08994 * 109.51266 * 302.65735 * 27 26 25 48 48 H 1.09001 * 109.51184 * 182.50136 * 27 26 25 49 49 H 1.09001 * 109.68605 * 350.23656 * 28 23 21 50 50 H 1.09007 * 109.68058 * 110.75566 * 28 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3298 1.7812 1.4356 5 1 1.4045 1.6878 2.0040 6 6 3.5603 1.2294 2.1740 7 6 3.6356 2.6547 2.7386 8 7 2.9411 3.1157 1.5270 9 6 2.8841 4.2779 0.8051 10 1 2.3696 4.2991 -0.1444 11 6 3.4826 5.4300 1.2961 12 7 4.1096 5.4041 2.4530 13 14 3.3982 7.0173 0.3149 14 1 1.9778 7.4052 0.1221 15 1 4.1089 8.0931 1.0516 16 1 4.0403 6.8157 -1.0089 17 6 2.1388 -1.1672 0.0005 18 8 3.3517 -1.1673 0.0001 19 6 1.3853 -2.4723 0.0005 20 6 2.3795 -3.6353 0.0005 21 6 1.6260 -4.9403 0.0012 22 8 0.4131 -4.9403 0.0020 23 7 2.2999 -6.1076 0.0007 24 6 3.7711 -6.1329 -0.0065 25 6 4.2399 -7.0658 1.1216 26 8 3.5830 -8.3287 0.9891 27 6 2.1611 -8.2658 1.1237 28 6 1.5859 -7.3943 0.0008 29 1 -0.3632 -0.0040 -1.0277 30 1 -0.3633 -0.8880 0.5172 31 1 -0.3633 0.8920 0.5103 32 1 1.6560 2.0009 -0.5988 33 1 3.1900 1.1152 -0.4239 34 1 4.3931 0.9618 1.5236 35 1 3.3316 0.4657 2.9174 36 1 4.6538 3.0338 2.8261 37 1 3.0548 2.7925 3.6507 38 1 4.5282 6.2092 2.7960 39 1 0.7584 -2.5298 0.8903 40 1 0.7590 -2.5302 -0.8896 41 1 3.0062 -3.5776 -0.8894 42 1 3.0062 -3.5776 0.8905 43 1 4.1271 -6.5058 -0.9668 44 1 4.1563 -5.1274 0.1631 45 1 3.9921 -6.6261 2.0878 46 1 5.3184 -7.2073 1.0519 47 1 1.9058 -7.8306 2.0898 48 1 1.7441 -9.2705 1.0545 49 1 0.5234 -7.2247 0.1752 50 1 1.7255 -7.8917 -0.9591 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001656105831.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:21 Heat of formation + Delta-G solvation = -71.342203 kcal Electronic energy + Delta-G solvation = -29901.931177 eV Core-core repulsion = 25737.760856 eV Total energy + Delta-G solvation = -4164.170321 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.53051 -40.93697 -39.68497 -39.24267 -36.44681 -35.82362 -34.33200 -34.02508 -32.32404 -30.20607 -29.89120 -28.97866 -27.53917 -26.31577 -25.38912 -24.92672 -23.72127 -22.73598 -21.04716 -20.24455 -19.93504 -18.81549 -18.56411 -17.75777 -17.38413 -17.32898 -17.13750 -16.71129 -16.60293 -16.46469 -16.02827 -15.88705 -15.80150 -15.49355 -14.95256 -14.68471 -14.51432 -14.03549 -13.93828 -13.76551 -13.59805 -13.52634 -13.40686 -13.24188 -12.97939 -12.93348 -12.63991 -12.58428 -12.48620 -12.35837 -12.26225 -12.16038 -11.83509 -11.75049 -11.66147 -11.24188 -11.18246 -10.87786 -10.85014 -10.74525 -9.64382 -9.57602 -8.89961 -7.91091 -5.24533 1.45016 1.49032 1.50944 1.54834 1.68407 1.73644 2.10886 2.49233 2.86835 3.27632 3.33373 3.48094 3.72205 3.80131 3.84061 3.90426 4.01818 4.06782 4.10562 4.22315 4.25992 4.28034 4.34439 4.37051 4.44753 4.49868 4.62279 4.65898 4.67485 4.76046 4.77294 4.84872 4.87743 4.88022 4.92314 4.94220 4.97953 5.02338 5.09667 5.20926 5.35577 5.46821 5.52588 5.72714 5.92379 6.10281 6.22334 6.48226 6.89751 7.02544 7.22953 7.60199 8.62391 9.27910 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.024996 B = 0.002005 C = 0.001923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.930578 B =13959.957935 C =14560.189865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.611 5.611 3 C 0.129 3.871 4 C 0.136 3.864 5 H 0.051 0.949 6 C -0.130 4.130 7 C 0.153 3.847 8 N -0.630 5.630 9 C -0.224 4.224 10 H 0.089 0.911 11 C -0.071 4.071 12 N -0.956 5.956 13 Si 0.980 3.020 14 H -0.274 1.274 15 H -0.297 1.297 16 H -0.275 1.275 17 C 0.509 3.491 18 O -0.573 6.573 19 C -0.112 4.112 20 C -0.118 4.118 21 C 0.520 3.480 22 O -0.573 6.573 23 N -0.619 5.619 24 C 0.067 3.933 25 C 0.044 3.956 26 O -0.396 6.396 27 C 0.050 3.950 28 C 0.074 3.926 29 H 0.073 0.927 30 H 0.094 0.906 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.028 0.972 37 H 0.018 0.982 38 H 0.248 0.752 39 H 0.109 0.891 40 H 0.109 0.891 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.089 0.911 44 H 0.111 0.889 45 H 0.057 0.943 46 H 0.127 0.873 47 H 0.053 0.947 48 H 0.125 0.875 49 H 0.092 0.908 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.773 -28.749 -5.088 29.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.343 5.343 3 C 0.005 3.995 4 C 0.029 3.971 5 H 0.068 0.932 6 C -0.168 4.168 7 C 0.027 3.973 8 N -0.356 5.356 9 C -0.352 4.352 10 H 0.107 0.893 11 C -0.264 4.264 12 N -0.605 5.605 13 Si 0.808 3.192 14 H -0.200 1.200 15 H -0.223 1.223 16 H -0.201 1.201 17 C 0.298 3.702 18 O -0.453 6.453 19 C -0.152 4.152 20 C -0.158 4.158 21 C 0.310 3.690 22 O -0.453 6.453 23 N -0.353 5.353 24 C -0.055 4.055 25 C -0.033 4.033 26 O -0.314 6.314 27 C -0.027 4.027 28 C -0.048 4.048 29 H 0.091 0.909 30 H 0.113 0.887 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.095 0.905 36 H 0.046 0.954 37 H 0.036 0.964 38 H 0.057 0.943 39 H 0.127 0.873 40 H 0.127 0.873 41 H 0.126 0.874 42 H 0.126 0.874 43 H 0.108 0.892 44 H 0.129 0.871 45 H 0.076 0.924 46 H 0.145 0.855 47 H 0.071 0.929 48 H 0.143 0.857 49 H 0.111 0.889 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -5.640 -28.565 -5.210 29.579 hybrid contribution -0.091 1.691 -0.020 1.694 sum -5.731 -26.874 -5.230 27.972 Atomic orbital electron populations 1.22052 0.77334 1.04404 1.03241 1.47911 1.08346 1.05284 1.72794 1.21405 0.97040 0.84229 0.96835 1.22558 0.95178 0.84435 0.94936 0.93208 1.23424 0.98260 0.95627 0.99530 1.21909 0.95780 0.90320 0.89256 1.46003 1.51840 1.09463 1.28299 1.19273 1.29947 0.85954 1.00038 0.89317 1.25734 1.01468 1.01014 0.98204 1.70038 1.41104 1.28253 1.21098 0.85131 0.77832 0.78675 0.77591 1.19988 1.22305 1.20121 1.21094 0.87785 0.86065 0.75210 1.90685 1.15409 1.87876 1.51294 1.21339 0.98364 0.89050 1.06413 1.21366 0.98558 0.89481 1.06434 1.20902 0.87524 0.85917 0.74641 1.90680 1.15231 1.87788 1.51631 1.48266 1.08003 1.05766 1.73289 1.22779 0.78342 1.03203 1.01170 1.23221 0.99221 0.83748 0.97138 1.87961 1.19628 1.30547 1.93311 1.23065 0.80931 1.01858 0.96819 1.22375 0.98320 0.83441 1.00689 0.90891 0.88749 0.91023 0.91145 0.91605 0.90988 0.90521 0.95356 0.96445 0.94336 0.87329 0.87327 0.87402 0.87409 0.89240 0.87089 0.92448 0.85494 0.92859 0.85671 0.88945 0.89911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.34 10.26 127.77 1.31 2.65 16 2 N -0.61 -16.42 2.87 -846.76 -2.43 -18.86 16 3 C 0.13 4.58 5.42 86.38 0.47 5.04 16 4 C 0.14 5.54 4.31 41.88 0.18 5.72 16 5 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 6 C -0.13 -5.28 8.03 31.02 0.25 -5.03 16 7 C 0.15 7.70 7.22 83.18 0.60 8.30 16 8 N -0.63 -32.94 3.64 -713.36 -2.59 -35.53 16 9 C -0.22 -12.59 10.55 84.03 0.89 -11.70 16 10 H 0.09 4.66 7.83 -2.91 -0.02 4.64 16 11 C -0.07 -4.13 5.50 84.86 0.47 -3.67 16 12 N -0.96 -59.34 11.73 21.65 0.25 -59.08 16 13 Si 0.98 46.10 29.55 68.60 2.03 48.12 16 14 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 15 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 16 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 17 C 0.51 13.45 7.67 87.66 0.67 14.13 16 18 O -0.57 -19.10 15.48 -3.04 -0.05 -19.15 16 19 C -0.11 -2.10 3.54 29.85 0.11 -1.99 16 20 C -0.12 -2.00 3.36 29.85 0.10 -1.90 16 21 C 0.52 9.72 7.71 87.66 0.68 10.39 16 22 O -0.57 -14.22 15.45 -3.05 -0.05 -14.27 16 23 N -0.62 -9.11 3.01 -816.43 -2.46 -11.57 16 24 C 0.07 0.68 6.57 86.50 0.57 1.24 16 25 C 0.04 0.43 7.00 72.22 0.51 0.93 16 26 O -0.40 -5.35 10.74 -148.98 -1.60 -6.95 16 27 C 0.05 0.54 6.99 72.10 0.50 1.05 16 28 C 0.07 0.96 6.64 86.37 0.57 1.53 16 29 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.09 1.34 6.45 -2.39 -0.02 1.33 16 31 H 0.07 1.42 8.07 -2.39 -0.02 1.40 16 32 H 0.07 2.49 8.11 -2.39 -0.02 2.47 16 33 H 0.07 2.65 7.00 -2.38 -0.02 2.63 16 34 H 0.07 3.08 7.95 -2.39 -0.02 3.06 16 35 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 36 H 0.03 1.58 7.50 -2.39 -0.02 1.56 16 37 H 0.02 0.90 8.14 -2.38 -0.02 0.88 16 38 H 0.25 14.96 8.31 -92.70 -0.77 14.19 16 39 H 0.11 1.89 7.36 -2.39 -0.02 1.87 16 40 H 0.11 1.86 8.07 -2.39 -0.02 1.84 16 41 H 0.11 1.73 7.96 -2.39 -0.02 1.71 16 42 H 0.11 1.74 7.63 -2.38 -0.02 1.72 16 43 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.11 0.93 6.05 -2.39 -0.01 0.92 16 45 H 0.06 0.58 8.14 -2.38 -0.02 0.56 16 46 H 0.13 0.74 8.14 -2.39 -0.02 0.72 16 47 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 48 H 0.13 0.82 8.14 -2.39 -0.02 0.80 16 49 H 0.09 1.39 7.08 -2.39 -0.02 1.38 16 50 H 0.08 0.94 8.14 -2.38 -0.02 0.93 16 Total: -1.00 -77.54 401.38 1.89 -75.65 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: 0.92 Total: 14.95 kcal Atomic # 6 Polarization: 18.82 SS G_CDS: 7.87 Total: 26.69 kcal Atomic # 7 Polarization: -117.81 SS G_CDS: -7.23 Total: -125.05 kcal Atomic # 8 Polarization: -38.67 SS G_CDS: -1.69 Total: -40.37 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.12 kcal Total: -77.54 1.89 -75.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656105831.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.310 kcal (2) G-P(sol) polarization free energy of solvation -77.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds