Wall clock time and date at job start Sat Apr 11 2020 05:47:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42899 * 114.00006 * 2 1 4 4 C 1.53781 * 113.61388 * 150.00071 * 3 2 1 5 5 C 1.53781 * 87.08070 * 139.98235 * 4 3 2 6 6 C 1.50697 * 113.61630 * 219.93625 * 5 4 3 7 7 O 1.21288 * 120.00090 * 358.47236 * 6 5 4 8 8 N 1.34768 * 120.00434 * 178.46913 * 6 5 4 9 9 C 1.46502 * 120.00739 * 179.97438 * 8 6 5 10 10 C 1.52997 * 109.47510 * 180.02562 * 9 8 6 11 11 H 1.08993 * 112.85141 * 43.80758 * 10 9 8 12 12 C 1.53784 * 113.61101 * 175.00067 * 10 9 8 13 13 C 1.53783 * 87.07882 * 139.98045 * 12 10 9 14 14 H 1.09003 * 113.61448 * 89.11499 * 13 12 10 15 15 N 1.46899 * 113.61526 * 219.93200 * 13 12 10 16 16 C 1.46904 * 110.99942 * 204.99884 * 15 13 12 17 17 C 1.50698 * 109.47025 * 179.97438 * 16 15 13 18 18 O 1.21294 * 120.00236 * 0.02562 * 17 16 15 19 19 N 1.34779 * 120.00051 * 179.97438 * 17 16 15 20 20 C 1.37093 * 119.99959 * 180.02562 * 19 17 16 21 21 H 1.07997 * 120.00516 * 0.02562 * 20 19 17 22 22 C 1.38949 * 120.00086 * 180.02562 * 20 19 17 23 23 N 1.31416 * 120.00034 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00370 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47040 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.46841 * 119.99708 * 24 22 20 27 27 H 1.48493 * 109.47337 * 240.00194 * 24 22 20 28 28 C 1.53775 * 113.61390 * 272.50002 * 10 9 8 29 29 C 1.53786 * 87.17350 * 334.52830 * 5 4 3 30 30 H 1.08996 * 109.46874 * 59.99756 * 1 2 3 31 31 H 1.08999 * 109.47160 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46662 * 299.99626 * 1 2 3 33 33 H 1.09003 * 112.90486 * 18.75199 * 3 2 1 34 34 H 1.08999 * 113.61181 * 25.43291 * 4 3 2 35 35 H 1.08998 * 113.61680 * 254.52843 * 4 3 2 36 36 H 1.09002 * 113.61445 * 89.11830 * 5 4 3 37 37 H 0.97004 * 120.00000 * 0.02562 * 8 6 5 38 38 H 1.08997 * 109.46835 * 300.00823 * 9 8 6 39 39 H 1.09008 * 109.46689 * 59.99994 * 9 8 6 40 40 H 1.09000 * 113.61576 * 254.52915 * 12 10 9 41 41 H 1.09003 * 113.61376 * 25.35319 * 12 10 9 42 42 H 1.00895 * 111.00313 * 328.95635 * 15 13 12 43 43 H 1.09000 * 109.47062 * 300.00198 * 16 15 13 44 44 H 1.09000 * 109.46763 * 60.00608 * 16 15 13 45 45 H 0.96999 * 119.99597 * 0.02562 * 19 17 16 46 46 H 0.96998 * 120.00408 * 179.97438 * 23 22 20 47 47 H 1.09005 * 113.61582 * 334.56105 * 28 10 9 48 48 H 1.08995 * 113.61744 * 105.47528 * 28 10 9 49 49 H 1.08992 * 113.61675 * 140.02412 * 29 5 4 50 50 H 1.09000 * 113.60973 * 270.92699 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.3756 1.3719 0.7045 5 6 3.8228 2.3181 -0.4222 6 6 5.2335 2.0731 -0.8922 7 8 5.9072 1.2128 -0.3658 8 7 5.7465 2.8097 -1.8974 9 6 7.1181 2.5719 -2.3539 10 6 7.4500 3.5352 -3.4953 11 1 7.1116 4.5531 -3.3020 12 6 8.9112 3.4510 -3.9671 13 6 8.3745 3.5993 -5.4005 14 1 8.2883 4.6350 -5.7295 15 7 9.0629 2.7458 -6.3780 16 6 8.9647 3.3097 -7.7309 17 6 9.6813 2.4092 -8.7038 18 8 10.2204 1.3969 -8.3091 19 7 9.7223 2.7281 -10.0126 20 6 10.3737 1.9086 -10.8977 21 1 10.8538 1.0072 -10.5464 22 6 10.4165 2.2376 -12.2470 23 7 9.8320 3.3341 -12.6748 24 14 11.3048 1.1214 -13.4530 25 1 11.8743 -0.0407 -12.7247 26 1 10.3462 0.6398 -14.4799 27 1 12.3993 1.8772 -14.1132 28 6 7.0536 3.0054 -4.8834 29 6 2.7548 1.6496 -1.3040 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.3143 2.0797 0.3228 34 1 3.9089 0.4213 0.7137 35 1 3.3385 1.8470 1.6848 36 1 3.6223 3.3693 -0.2149 37 1 5.2078 3.4980 -2.3182 38 1 7.8096 2.7361 -1.5276 39 1 7.2106 1.5446 -2.7065 40 1 9.5244 4.2912 -3.6413 41 1 9.3781 2.4855 -3.7720 42 1 10.0263 2.6003 -6.1159 43 1 7.9156 3.3910 -8.0154 44 1 9.4230 4.2986 -7.7464 45 1 9.2908 3.5375 -10.3283 46 1 9.8621 3.5641 -13.6167 47 1 7.0122 1.9177 -4.9402 48 1 6.1672 3.4860 -5.2974 49 1 2.2169 2.3488 -1.9441 50 1 3.1187 0.7748 -1.8429 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001656140061.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:27 Heat of formation + Delta-G solvation = -107.649809 kcal Electronic energy + Delta-G solvation = -28092.496608 eV Core-core repulsion = 23926.751870 eV Total energy + Delta-G solvation = -4165.744737 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.44951 -40.52042 -39.87929 -39.24589 -36.76511 -36.21446 -35.78257 -34.43120 -33.24341 -29.78370 -28.31572 -27.62999 -26.70449 -26.61818 -26.19436 -25.41188 -22.53549 -21.96165 -21.19380 -20.69663 -20.16716 -19.85899 -18.69175 -17.84232 -17.25253 -17.08278 -16.84779 -16.76230 -16.45670 -16.24874 -16.06953 -15.92854 -15.74571 -15.37447 -15.20196 -15.01213 -14.47433 -14.42107 -13.99119 -13.55299 -13.51143 -13.47824 -13.29910 -13.12854 -12.98777 -12.76636 -12.73711 -12.43803 -12.39249 -12.12794 -12.11300 -11.85327 -11.81058 -11.71865 -11.56511 -11.51777 -11.15021 -10.76214 -10.40913 -10.32838 -10.06575 -10.02151 -9.28233 -8.47698 -5.96418 1.35977 1.41397 1.55593 1.60972 2.04568 2.18492 2.29038 2.95531 2.98868 3.19670 3.41965 3.48214 3.56198 3.62757 3.71333 3.77105 3.90988 3.92860 4.00105 4.14026 4.26899 4.36643 4.37875 4.45669 4.49665 4.55291 4.60012 4.60209 4.73222 4.75212 4.79499 4.86347 4.89097 4.92477 4.97816 4.98032 5.07200 5.13935 5.24981 5.29978 5.39797 5.41922 5.56079 5.94283 6.20925 6.35095 6.44136 6.59477 6.59792 7.12083 7.28824 7.55564 8.11323 8.69878 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017473 B = 0.001490 C = 0.001420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.069944 B =18785.160144 C =19718.400260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.409 6.409 3 C 0.064 3.936 4 C -0.125 4.125 5 C -0.125 4.125 6 C 0.515 3.485 7 O -0.592 6.592 8 N -0.711 5.711 9 C 0.133 3.867 10 C -0.100 4.100 11 H 0.126 0.874 12 C -0.130 4.130 13 C 0.053 3.947 14 H 0.091 0.909 15 N -0.675 5.675 16 C 0.067 3.933 17 C 0.435 3.565 18 O -0.626 6.626 19 N -0.573 5.573 20 C -0.335 4.335 21 H 0.077 0.923 22 C -0.012 4.012 23 N -0.919 5.919 24 Si 0.993 3.007 25 H -0.275 1.275 26 H -0.271 1.271 27 H -0.269 1.269 28 C -0.122 4.122 29 C -0.136 4.136 30 H 0.053 0.947 31 H 0.087 0.913 32 H 0.057 0.943 33 H 0.124 0.876 34 H 0.066 0.934 35 H 0.093 0.907 36 H 0.156 0.844 37 H 0.418 0.582 38 H 0.062 0.938 39 H 0.044 0.956 40 H 0.087 0.913 41 H 0.076 0.924 42 H 0.343 0.657 43 H 0.102 0.898 44 H 0.068 0.932 45 H 0.397 0.603 46 H 0.278 0.722 47 H 0.065 0.935 48 H 0.079 0.921 49 H 0.108 0.892 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.488 8.784 25.295 33.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.328 6.328 3 C 0.006 3.994 4 C -0.163 4.163 5 C -0.146 4.146 6 C 0.303 3.697 7 O -0.472 6.472 8 N -0.363 5.363 9 C 0.009 3.991 10 C -0.119 4.119 11 H 0.144 0.856 12 C -0.168 4.168 13 C -0.056 4.056 14 H 0.109 0.891 15 N -0.307 5.307 16 C -0.066 4.066 17 C 0.223 3.777 18 O -0.512 6.512 19 N -0.210 5.210 20 C -0.465 4.465 21 H 0.095 0.905 22 C -0.211 4.211 23 N -0.560 5.560 24 Si 0.816 3.184 25 H -0.200 1.200 26 H -0.196 1.196 27 H -0.194 1.194 28 C -0.160 4.160 29 C -0.174 4.174 30 H 0.072 0.928 31 H 0.105 0.895 32 H 0.075 0.925 33 H 0.141 0.859 34 H 0.085 0.915 35 H 0.111 0.889 36 H 0.174 0.826 37 H 0.255 0.745 38 H 0.080 0.920 39 H 0.062 0.938 40 H 0.105 0.895 41 H 0.095 0.905 42 H 0.163 0.837 43 H 0.120 0.880 44 H 0.086 0.914 45 H 0.231 0.769 46 H 0.087 0.913 47 H 0.084 0.916 48 H 0.098 0.902 49 H 0.126 0.874 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -19.079 7.006 25.625 32.707 hybrid contribution 0.799 0.606 -1.207 1.569 sum -18.280 7.612 24.418 31.438 Atomic orbital electron populations 1.22979 0.79581 1.03576 1.01158 1.87960 1.21577 1.28622 1.94643 1.23904 0.93932 0.85640 0.95923 1.23122 0.95285 0.99477 0.98402 1.22589 0.89711 1.03358 0.98938 1.20994 0.89349 0.80212 0.79138 1.90702 1.62961 1.35218 1.58361 1.45899 1.15375 1.38962 1.36048 1.21252 0.82923 0.98509 0.96408 1.22533 0.96738 1.00119 0.92470 0.85601 1.23169 0.96392 1.02979 0.94305 1.23202 0.96380 0.95571 0.90492 0.89148 1.60237 1.21309 1.48928 1.00272 1.21585 1.01130 0.94988 0.88885 1.20991 0.84829 0.88319 0.83567 1.90494 1.51789 1.30148 1.78812 1.41936 1.49101 1.23913 1.06060 1.19703 1.31965 1.05801 0.89038 0.90502 1.26022 0.98030 0.98340 0.98740 1.69671 1.44237 1.24891 1.17218 0.84876 0.78065 0.77866 0.77548 1.19978 1.19578 1.19444 1.23144 0.97273 1.00584 0.94997 1.23451 0.95859 1.00636 0.97493 0.92837 0.89476 0.92478 0.85874 0.91494 0.88889 0.82618 0.74491 0.92008 0.93755 0.89456 0.90497 0.83714 0.88019 0.91377 0.76918 0.91264 0.91647 0.90215 0.87394 0.91550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 10.85 113.37 1.23 1.44 16 2 O -0.41 -6.91 10.72 -148.98 -1.60 -8.50 16 3 C 0.06 0.72 4.32 31.21 0.13 0.86 16 4 C -0.12 -1.83 7.23 31.12 0.22 -1.61 16 5 C -0.13 -1.39 4.14 -11.01 -0.05 -1.44 16 6 C 0.52 9.92 7.35 87.66 0.64 10.57 16 7 O -0.59 -17.84 15.91 -3.05 -0.05 -17.89 16 8 N -0.71 -10.03 5.56 -463.06 -2.57 -12.61 16 9 C 0.13 2.35 5.51 86.38 0.48 2.83 16 10 C -0.10 -1.36 3.75 -10.27 -0.04 -1.40 16 11 H 0.13 1.02 8.14 -2.39 -0.02 1.00 16 12 C -0.13 -2.25 7.21 31.12 0.22 -2.03 16 13 C 0.05 1.11 4.14 45.44 0.19 1.30 16 14 H 0.09 1.61 7.87 -2.39 -0.02 1.59 16 15 N -0.68 -21.07 6.19 -492.83 -3.05 -24.12 16 16 C 0.07 2.26 6.01 85.56 0.51 2.77 16 17 C 0.44 20.98 7.82 87.66 0.69 21.67 16 18 O -0.63 -35.50 15.78 -3.07 -0.05 -35.55 16 19 N -0.57 -29.65 5.29 -306.99 -1.62 -31.27 16 20 C -0.34 -19.30 9.68 84.04 0.81 -18.49 16 21 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 22 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 23 N -0.92 -49.56 13.05 21.66 0.28 -49.28 16 24 Si 0.99 43.25 29.55 68.60 2.03 45.28 16 25 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 26 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 27 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 28 C -0.12 -2.29 7.43 31.12 0.23 -2.06 16 29 C -0.14 -1.51 7.48 31.21 0.23 -1.28 16 30 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16 31 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.06 0.34 8.14 -2.38 -0.02 0.32 16 33 H 0.12 0.59 7.87 -2.39 -0.02 0.57 16 34 H 0.07 1.52 7.45 -2.39 -0.02 1.50 16 35 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.16 0.49 8.14 -2.39 -0.02 0.47 16 37 H 0.42 2.90 8.47 -92.71 -0.79 2.12 16 38 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.04 1.05 7.85 -2.38 -0.02 1.03 16 40 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.08 1.62 8.10 -2.39 -0.02 1.60 16 42 H 0.34 11.42 8.24 -89.70 -0.74 10.68 16 43 H 0.10 3.13 8.14 -2.39 -0.02 3.11 16 44 H 0.07 1.99 8.13 -2.39 -0.02 1.97 16 45 H 0.40 19.34 7.90 -92.71 -0.73 18.61 16 46 H 0.28 13.95 8.31 -92.71 -0.77 13.18 16 47 H 0.06 1.62 7.90 -2.38 -0.02 1.61 16 48 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 49 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 50 H 0.07 1.15 8.09 -2.39 -0.02 1.13 16 Total: -1.00 -80.11 414.69 -1.94 -82.04 By element: Atomic # 1 Polarization: 40.21 SS G_CDS: -1.29 Total: 38.92 kcal Atomic # 6 Polarization: 7.00 SS G_CDS: 5.98 Total: 12.99 kcal Atomic # 7 Polarization: -110.31 SS G_CDS: -6.96 Total: -117.27 kcal Atomic # 8 Polarization: -60.25 SS G_CDS: -1.69 Total: -61.95 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Total: -80.11 -1.94 -82.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656140061.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.608 kcal (2) G-P(sol) polarization free energy of solvation -80.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds