Wall clock time and date at job start Sat Apr 11 2020 05:47:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42904 * 113.99423 * 2 1 4 4 C 1.53006 * 109.46866 * 180.02562 * 3 2 1 5 5 C 1.50699 * 109.47134 * 180.02562 * 4 3 2 6 6 O 1.21285 * 120.00024 * 359.97438 * 5 4 3 7 7 N 1.34775 * 119.99827 * 179.72586 * 5 4 3 8 8 C 1.46498 * 119.99849 * 180.27312 * 7 5 4 9 9 H 1.09004 * 115.55504 * 9.29175 * 8 7 5 10 10 C 1.53059 * 117.50585 * 223.53951 * 8 7 5 11 11 C 1.52741 * 59.94213 * 252.52911 * 10 8 7 12 12 C 1.53217 * 117.84289 * 107.73537 * 11 10 8 13 13 C 1.53260 * 108.61671 * 197.02436 * 12 11 10 14 14 N 1.46811 * 109.44390 * 304.41199 * 13 12 11 15 15 C 1.46898 * 111.00171 * 189.19859 * 14 13 12 16 16 C 1.50703 * 109.47485 * 300.22102 * 15 14 13 17 17 O 1.21287 * 119.99509 * 354.33754 * 16 15 14 18 18 N 1.34768 * 120.00129 * 174.33274 * 16 15 14 19 19 C 1.37102 * 120.00090 * 179.97438 * 18 16 15 20 20 H 1.07999 * 119.99677 * 0.02562 * 19 18 16 21 21 C 1.38946 * 120.00037 * 180.02562 * 19 18 16 22 22 N 1.31404 * 120.00173 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99933 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47166 * 89.99824 * 23 21 19 25 25 H 1.48494 * 109.47295 * 210.00480 * 23 21 19 26 26 H 1.48505 * 109.46929 * 330.00215 * 23 21 19 27 27 C 1.46812 * 111.58810 * 64.82106 * 14 13 12 28 28 C 1.53216 * 117.84738 * 252.26327 * 11 10 8 29 29 H 1.09003 * 109.47324 * 299.99231 * 1 2 3 30 30 H 1.08995 * 109.47728 * 60.00208 * 1 2 3 31 31 H 1.09004 * 109.46481 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46876 * 60.00921 * 3 2 1 33 33 H 1.08993 * 109.47435 * 300.00396 * 3 2 1 34 34 H 1.08996 * 109.46977 * 60.00290 * 4 3 2 35 35 H 1.09002 * 109.47077 * 300.00090 * 4 3 2 36 36 H 0.96995 * 119.99969 * 0.27258 * 7 5 4 37 37 H 1.08992 * 117.50032 * 0.02562 * 10 8 7 38 38 H 1.08998 * 117.50209 * 145.05825 * 10 8 7 39 39 H 1.09001 * 109.60887 * 316.75544 * 12 11 10 40 40 H 1.08997 * 109.61439 * 77.28524 * 12 11 10 41 41 H 1.09001 * 109.47805 * 184.42045 * 13 12 11 42 42 H 1.09001 * 109.48605 * 64.40313 * 13 12 11 43 43 H 1.08997 * 109.47123 * 60.22127 * 15 14 13 44 44 H 1.09000 * 109.47263 * 180.22197 * 15 14 13 45 45 H 0.97002 * 120.00597 * 0.02562 * 18 16 15 46 46 H 0.97004 * 119.99950 * 179.97438 * 22 21 19 47 47 H 1.08993 * 109.47935 * 175.19439 * 27 14 13 48 48 H 1.08998 * 109.47855 * 55.16913 * 27 14 13 49 49 H 1.09000 * 109.61317 * 282.72334 * 28 11 10 50 50 H 1.09005 * 109.61215 * 43.06594 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 6 4.1483 2.5616 0.0000 6 8 3.4353 3.5427 0.0004 7 7 5.4886 2.7025 0.0052 8 6 6.0844 4.0408 0.0118 9 1 5.3884 4.8645 0.1710 10 6 7.2742 4.2896 -0.9183 11 6 7.4912 4.1841 0.5899 12 6 8.1741 2.9225 1.1281 13 6 7.9090 2.8274 2.6346 14 7 8.3601 4.0618 3.2890 15 6 8.3253 3.9255 4.7512 16 6 6.9166 3.6254 5.1945 17 8 6.0117 3.6355 4.3869 18 7 6.6623 3.3458 6.4880 19 6 5.3806 3.0733 6.8914 20 1 4.5748 3.0824 6.1723 21 6 5.1183 2.7856 8.2252 22 7 6.0986 2.7750 9.1001 23 14 3.3721 2.4136 8.7746 24 1 3.1198 0.9541 8.6679 25 1 3.1941 2.8450 10.1843 26 1 2.4140 3.1461 7.9081 27 6 7.5766 5.2232 2.8502 28 6 7.8208 5.4686 1.3571 29 1 -0.3634 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3632 -1.0277 -0.0005 32 1 1.6885 1.8464 0.8901 33 1 1.6884 1.8465 -0.8899 34 1 3.8566 0.6441 -0.8909 35 1 3.8574 0.6437 0.8891 36 1 6.0588 1.9178 0.0045 37 1 7.6132 3.4576 -1.5354 38 1 7.3610 5.2771 -1.3715 39 1 7.7655 2.0440 0.6286 40 1 9.2475 2.9826 0.9485 41 1 8.4536 1.9778 3.0465 42 1 6.8413 2.6935 2.8082 43 1 8.9832 3.1116 5.0560 44 1 8.6606 4.8552 5.2109 45 1 7.3859 3.3380 7.1340 46 1 5.9154 2.5745 10.0314 47 1 7.8813 6.1026 3.4175 48 1 6.5169 5.0313 3.0183 49 1 8.8658 5.7332 1.1959 50 1 7.1803 6.2783 1.0073 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001661049714.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:30 Heat of formation + Delta-G solvation = -90.728581 kcal Electronic energy + Delta-G solvation = -30573.762608 eV Core-core repulsion = 26408.751631 eV Total energy + Delta-G solvation = -4165.010978 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.33554 -39.31687 -38.24972 -37.70287 -35.85781 -33.89612 -33.24293 -31.78531 -31.33307 -30.73536 -29.95150 -26.84147 -26.27618 -24.30255 -23.99984 -23.14048 -21.87963 -21.40501 -20.38175 -19.34309 -18.64481 -17.86309 -17.44279 -16.42468 -16.36694 -16.02895 -15.85394 -15.17790 -15.10622 -14.95721 -14.81284 -14.60286 -14.14620 -14.00210 -13.86533 -13.64397 -13.47629 -13.21489 -12.94104 -12.53633 -12.26500 -12.06217 -11.96702 -11.81002 -11.63619 -11.52038 -11.43901 -11.33371 -11.19159 -11.15259 -10.59610 -10.59118 -10.41588 -10.25882 -10.23616 -9.95771 -9.82286 -9.63335 -9.47510 -9.15632 -8.64255 -7.99770 -7.39144 -6.45698 -3.86882 2.55813 2.86918 3.14081 3.23661 3.29758 3.76522 3.83014 3.83816 4.14757 4.37031 4.61463 4.69965 4.74145 4.79600 4.90354 4.95908 4.99245 5.06397 5.17984 5.20527 5.22554 5.35797 5.45856 5.48845 5.55130 5.64040 5.66021 5.70612 5.71876 5.76402 5.89899 5.91122 5.93100 6.01839 6.08446 6.10916 6.21646 6.28602 6.31940 6.50215 6.63197 6.78639 6.95642 7.40045 7.42865 7.50920 7.51203 8.01281 8.18021 8.56132 9.13293 9.49567 10.00430 10.70887 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.006796 B = 0.004064 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4119.320783 B = 6888.465540 C =10402.445566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.396 6.396 3 C 0.076 3.924 4 C -0.140 4.140 5 C 0.525 3.475 6 O -0.540 6.540 7 N -0.695 5.695 8 C 0.092 3.908 9 H 0.134 0.866 10 C -0.189 4.189 11 C -0.116 4.116 12 C -0.072 4.072 13 C 0.043 3.957 14 N -0.513 5.513 15 C 0.042 3.958 16 C 0.405 3.595 17 O -0.590 6.590 18 N -0.557 5.557 19 C -0.301 4.301 20 H 0.102 0.898 21 C 0.025 3.975 22 N -0.899 5.899 23 Si 0.928 3.072 24 H -0.277 1.277 25 H -0.283 1.283 26 H -0.270 1.270 27 C 0.042 3.958 28 C -0.073 4.073 29 H 0.044 0.956 30 H 0.041 0.959 31 H 0.086 0.914 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.100 0.900 35 H 0.106 0.894 36 H 0.401 0.599 37 H 0.094 0.906 38 H 0.100 0.900 39 H 0.056 0.944 40 H 0.071 0.929 41 H 0.062 0.938 42 H 0.076 0.924 43 H 0.086 0.914 44 H 0.088 0.912 45 H 0.392 0.608 46 H 0.272 0.728 47 H 0.063 0.937 48 H 0.076 0.924 49 H 0.070 0.930 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.997 -1.928 -18.142 18.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.315 6.315 3 C 0.000 4.000 4 C -0.180 4.180 5 C 0.312 3.688 6 O -0.417 6.417 7 N -0.346 5.346 8 C -0.014 4.014 9 H 0.152 0.848 10 C -0.228 4.228 11 C -0.118 4.118 12 C -0.110 4.110 13 C -0.085 4.085 14 N -0.236 5.236 15 C -0.090 4.090 16 C 0.191 3.809 17 O -0.477 6.477 18 N -0.193 5.193 19 C -0.431 4.431 20 H 0.119 0.881 21 C -0.177 4.177 22 N -0.540 5.540 23 Si 0.755 3.245 24 H -0.203 1.203 25 H -0.208 1.208 26 H -0.194 1.194 27 C -0.085 4.085 28 C -0.111 4.111 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.104 0.896 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.119 0.881 35 H 0.124 0.876 36 H 0.236 0.764 37 H 0.112 0.888 38 H 0.118 0.882 39 H 0.075 0.925 40 H 0.090 0.910 41 H 0.081 0.919 42 H 0.094 0.906 43 H 0.105 0.895 44 H 0.106 0.894 45 H 0.226 0.774 46 H 0.082 0.918 47 H 0.082 0.918 48 H 0.094 0.906 49 H 0.089 0.911 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.445 -1.349 -18.601 18.706 hybrid contribution -1.029 -0.543 1.146 1.633 sum 0.416 -1.893 -17.455 17.562 Atomic orbital electron populations 1.22729 0.80643 1.02667 1.00244 1.87792 1.20044 1.28049 1.95584 1.22156 0.91810 0.84194 1.01887 1.21461 0.95667 0.95107 1.05762 1.20325 0.82104 0.91081 0.75310 1.90708 1.60869 1.40812 1.49293 1.45308 1.06482 1.08065 1.74701 1.21712 0.89743 0.86619 1.03350 0.84804 1.23583 1.02794 1.03193 0.93181 1.21956 0.97761 0.98150 0.93888 1.21109 1.00093 0.94088 0.95736 1.22237 1.02034 0.91761 0.92487 1.62247 1.53353 1.03907 1.04137 1.22051 0.95170 1.02854 0.88962 1.21130 0.91238 0.84944 0.83588 1.90439 1.46950 1.58260 1.52062 1.42056 1.10021 1.59842 1.07377 1.19700 0.85826 1.44054 0.93516 0.88059 1.25260 0.99553 0.97273 0.95652 1.69607 1.31924 1.48901 1.03560 0.85893 0.82045 0.78771 0.77827 1.20349 1.20837 1.19434 1.22247 0.99595 0.92706 0.93984 1.21178 1.01378 0.93872 0.94664 0.93779 0.94081 0.89595 0.92050 0.92498 0.88143 0.87603 0.76350 0.88764 0.88200 0.92546 0.91000 0.91903 0.90638 0.89528 0.89406 0.77432 0.91796 0.91837 0.90622 0.91097 0.91746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 101.05 1.11 1.43 16 2 O -0.40 -4.84 10.70 -35.23 -0.38 -5.22 16 3 C 0.08 0.94 5.23 37.16 0.19 1.14 16 4 C -0.14 -1.57 6.07 -27.88 -0.17 -1.74 16 5 C 0.52 7.33 7.83 -10.99 -0.09 7.25 16 6 O -0.54 -9.60 15.55 5.55 0.09 -9.51 16 7 N -0.70 -8.49 5.34 -53.89 -0.29 -8.77 16 8 C 0.09 1.18 6.11 -68.02 -0.42 0.77 16 9 H 0.13 2.02 7.40 -51.93 -0.38 1.64 16 10 C -0.19 -1.90 9.93 -26.83 -0.27 -2.17 16 11 C -0.12 -1.41 2.02 -154.54 -0.31 -1.72 16 12 C -0.07 -0.87 5.67 -26.48 -0.15 -1.02 16 13 C 0.04 0.67 4.96 -3.74 -0.02 0.65 16 14 N -0.51 -8.29 4.78 -235.89 -1.13 -9.42 16 15 C 0.04 0.73 5.82 -4.98 -0.03 0.70 16 16 C 0.41 9.19 7.19 -10.99 -0.08 9.11 16 17 O -0.59 -15.00 11.30 5.55 0.06 -14.94 16 18 N -0.56 -13.88 5.29 -10.97 -0.06 -13.94 16 19 C -0.30 -8.33 9.68 -14.93 -0.14 -8.47 16 20 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 21 C 0.02 0.66 5.50 -17.47 -0.10 0.56 16 22 N -0.90 -24.32 13.05 55.50 0.72 -23.59 16 23 Si 0.93 21.11 29.55 -169.99 -5.02 16.08 16 24 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 25 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 26 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 27 C 0.04 0.69 5.05 -3.74 -0.02 0.67 16 28 C -0.07 -0.94 5.87 -26.48 -0.16 -1.09 16 29 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.84 8.10 -51.93 -0.42 0.42 16 33 H 0.06 0.68 8.10 -51.93 -0.42 0.25 16 34 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.11 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.40 3.91 6.85 -40.82 -0.28 3.63 16 37 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.06 0.58 6.19 -51.93 -0.32 0.25 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.06 0.95 8.08 -51.93 -0.42 0.53 16 42 H 0.08 1.47 5.79 -51.93 -0.30 1.17 16 43 H 0.09 1.38 8.13 -51.93 -0.42 0.96 16 44 H 0.09 1.41 8.04 -51.93 -0.42 1.00 16 45 H 0.39 9.41 7.90 -40.82 -0.32 9.09 16 46 H 0.27 6.97 8.31 -40.82 -0.34 6.64 16 47 H 0.06 0.99 8.01 -51.93 -0.42 0.57 16 48 H 0.08 1.53 5.80 -51.93 -0.30 1.23 16 49 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 50 H 0.06 0.77 8.08 -51.93 -0.42 0.35 16 LS Contribution 400.02 15.07 6.03 6.03 Total: -1.00 -32.62 400.02 -8.77 -41.38 By element: Atomic # 1 Polarization: 24.00 SS G_CDS: -8.16 Total: 15.84 kcal Atomic # 6 Polarization: 6.69 SS G_CDS: -0.63 Total: 6.05 kcal Atomic # 7 Polarization: -54.97 SS G_CDS: -0.75 Total: -55.72 kcal Atomic # 8 Polarization: -29.44 SS G_CDS: -0.23 Total: -29.67 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -32.62 -8.77 -41.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661049714.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.344 kcal (2) G-P(sol) polarization free energy of solvation -32.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds