Wall clock time and date at job start Sat Apr 11 2020 05:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42904 * 113.99423 * 2 1 4 4 C 1.53006 * 109.46866 * 180.02562 * 3 2 1 5 5 C 1.50699 * 109.47134 * 180.02562 * 4 3 2 6 6 O 1.21285 * 120.00024 * 359.97438 * 5 4 3 7 7 N 1.34775 * 119.99827 * 179.72586 * 5 4 3 8 8 C 1.46498 * 119.99849 * 180.27312 * 7 5 4 9 9 H 1.09004 * 115.55504 * 9.29175 * 8 7 5 10 10 C 1.53059 * 117.50585 * 223.53951 * 8 7 5 11 11 C 1.52741 * 59.94213 * 252.52911 * 10 8 7 12 12 C 1.53217 * 117.84289 * 107.73537 * 11 10 8 13 13 C 1.53260 * 108.61671 * 197.02436 * 12 11 10 14 14 N 1.46811 * 109.44390 * 304.41199 * 13 12 11 15 15 C 1.46898 * 111.00171 * 189.19859 * 14 13 12 16 16 C 1.50703 * 109.47485 * 300.22102 * 15 14 13 17 17 O 1.21287 * 119.99509 * 354.33754 * 16 15 14 18 18 N 1.34768 * 120.00129 * 174.33274 * 16 15 14 19 19 C 1.37102 * 120.00090 * 179.97438 * 18 16 15 20 20 H 1.07999 * 119.99677 * 0.02562 * 19 18 16 21 21 C 1.38946 * 120.00037 * 180.02562 * 19 18 16 22 22 N 1.31404 * 120.00173 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99933 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47166 * 89.99824 * 23 21 19 25 25 H 1.48494 * 109.47295 * 210.00480 * 23 21 19 26 26 H 1.48505 * 109.46929 * 330.00215 * 23 21 19 27 27 C 1.46812 * 111.58810 * 64.82106 * 14 13 12 28 28 C 1.53216 * 117.84738 * 252.26327 * 11 10 8 29 29 H 1.09003 * 109.47324 * 299.99231 * 1 2 3 30 30 H 1.08995 * 109.47728 * 60.00208 * 1 2 3 31 31 H 1.09004 * 109.46481 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46876 * 60.00921 * 3 2 1 33 33 H 1.08993 * 109.47435 * 300.00396 * 3 2 1 34 34 H 1.08996 * 109.46977 * 60.00290 * 4 3 2 35 35 H 1.09002 * 109.47077 * 300.00090 * 4 3 2 36 36 H 0.96995 * 119.99969 * 0.27258 * 7 5 4 37 37 H 1.08992 * 117.50032 * 0.02562 * 10 8 7 38 38 H 1.08998 * 117.50209 * 145.05825 * 10 8 7 39 39 H 1.09001 * 109.60887 * 316.75544 * 12 11 10 40 40 H 1.08997 * 109.61439 * 77.28524 * 12 11 10 41 41 H 1.09001 * 109.47805 * 184.42045 * 13 12 11 42 42 H 1.09001 * 109.48605 * 64.40313 * 13 12 11 43 43 H 1.08997 * 109.47123 * 60.22127 * 15 14 13 44 44 H 1.09000 * 109.47263 * 180.22197 * 15 14 13 45 45 H 0.97002 * 120.00597 * 0.02562 * 18 16 15 46 46 H 0.97004 * 119.99950 * 179.97438 * 22 21 19 47 47 H 1.08993 * 109.47935 * 175.19439 * 27 14 13 48 48 H 1.08998 * 109.47855 * 55.16913 * 27 14 13 49 49 H 1.09000 * 109.61317 * 282.72334 * 28 11 10 50 50 H 1.09005 * 109.61215 * 43.06594 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 6 4.1483 2.5616 0.0000 6 8 3.4353 3.5427 0.0004 7 7 5.4886 2.7025 0.0052 8 6 6.0844 4.0408 0.0118 9 1 5.3884 4.8645 0.1710 10 6 7.2742 4.2896 -0.9183 11 6 7.4912 4.1841 0.5899 12 6 8.1741 2.9225 1.1281 13 6 7.9090 2.8274 2.6346 14 7 8.3601 4.0618 3.2890 15 6 8.3253 3.9255 4.7512 16 6 6.9166 3.6254 5.1945 17 8 6.0117 3.6355 4.3869 18 7 6.6623 3.3458 6.4880 19 6 5.3806 3.0733 6.8914 20 1 4.5748 3.0824 6.1723 21 6 5.1183 2.7856 8.2252 22 7 6.0986 2.7750 9.1001 23 14 3.3721 2.4136 8.7746 24 1 3.1198 0.9541 8.6679 25 1 3.1941 2.8450 10.1843 26 1 2.4140 3.1461 7.9081 27 6 7.5766 5.2232 2.8502 28 6 7.8208 5.4686 1.3571 29 1 -0.3634 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3632 -1.0277 -0.0005 32 1 1.6885 1.8464 0.8901 33 1 1.6884 1.8465 -0.8899 34 1 3.8566 0.6441 -0.8909 35 1 3.8574 0.6437 0.8891 36 1 6.0588 1.9178 0.0045 37 1 7.6132 3.4576 -1.5354 38 1 7.3610 5.2771 -1.3715 39 1 7.7655 2.0440 0.6286 40 1 9.2475 2.9826 0.9485 41 1 8.4536 1.9778 3.0465 42 1 6.8413 2.6935 2.8082 43 1 8.9832 3.1116 5.0560 44 1 8.6606 4.8552 5.2109 45 1 7.3859 3.3380 7.1340 46 1 5.9154 2.5745 10.0314 47 1 7.8813 6.1026 3.4175 48 1 6.5169 5.0313 3.0183 49 1 8.8658 5.7332 1.1959 50 1 7.1803 6.2783 1.0073 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001661049714.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:29 Heat of formation + Delta-G solvation = -115.969499 kcal Electronic energy + Delta-G solvation = -30574.857136 eV Core-core repulsion = 26408.751631 eV Total energy + Delta-G solvation = -4166.105506 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.46653 -40.71305 -39.59731 -38.71405 -37.26609 -35.81200 -34.39763 -33.34713 -32.74237 -31.88418 -31.18970 -27.97267 -27.57630 -25.92385 -25.10075 -24.29391 -22.88574 -22.61541 -21.46836 -21.09293 -20.06303 -19.55114 -18.50904 -17.78463 -17.38576 -17.34904 -17.01178 -16.55777 -16.36080 -16.21465 -15.98417 -15.91373 -15.64973 -15.53007 -15.38772 -14.83531 -14.63299 -14.48512 -14.09001 -13.70749 -13.59420 -13.30797 -13.15284 -13.03777 -12.93074 -12.87631 -12.71020 -12.47502 -12.46197 -12.37947 -12.22245 -12.18066 -11.97084 -11.66655 -11.44391 -11.29951 -11.11326 -10.94654 -10.74624 -10.62470 -10.00938 -9.63617 -8.98060 -8.48770 -5.98619 1.31900 1.36249 1.47440 1.48329 1.90884 2.00958 2.25551 2.85847 2.87222 3.09104 3.17086 3.26797 3.62777 3.71304 3.75592 3.87926 3.94259 3.98624 4.06482 4.26863 4.39805 4.40687 4.45146 4.45941 4.48332 4.57287 4.64084 4.66877 4.67840 4.71695 4.75927 4.79608 4.83525 4.92235 4.94284 4.99835 5.01335 5.10998 5.28152 5.34236 5.35819 5.49970 5.50777 5.90809 6.06478 6.08557 6.17585 6.44091 6.57030 7.09833 7.15514 7.53665 8.09603 8.66434 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.006796 B = 0.004064 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4119.320783 B = 6888.465540 C =10402.445566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.408 6.408 3 C 0.079 3.921 4 C -0.132 4.132 5 C 0.517 3.483 6 O -0.588 6.588 7 N -0.684 5.684 8 C 0.062 3.938 9 H 0.102 0.898 10 C -0.148 4.148 11 C -0.124 4.124 12 C -0.064 4.064 13 C 0.042 3.958 14 N -0.499 5.499 15 C 0.049 3.951 16 C 0.407 3.593 17 O -0.619 6.619 18 N -0.571 5.571 19 C -0.332 4.332 20 H 0.072 0.928 21 C -0.009 4.009 22 N -0.917 5.917 23 Si 0.986 3.014 24 H -0.269 1.269 25 H -0.268 1.268 26 H -0.278 1.278 27 C 0.043 3.957 28 C -0.067 4.067 29 H 0.040 0.960 30 H 0.053 0.947 31 H 0.106 0.894 32 H 0.036 0.964 33 H 0.059 0.941 34 H 0.134 0.866 35 H 0.107 0.893 36 H 0.414 0.586 37 H 0.118 0.882 38 H 0.114 0.886 39 H 0.077 0.923 40 H 0.091 0.909 41 H 0.069 0.931 42 H 0.032 0.968 43 H 0.109 0.891 44 H 0.107 0.893 45 H 0.396 0.604 46 H 0.278 0.722 47 H 0.067 0.933 48 H 0.027 0.973 49 H 0.092 0.908 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.870 -2.814 -19.728 20.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.327 6.327 3 C 0.002 3.998 4 C -0.171 4.171 5 C 0.305 3.695 6 O -0.469 6.469 7 N -0.334 5.334 8 C -0.045 4.045 9 H 0.120 0.880 10 C -0.186 4.186 11 C -0.125 4.125 12 C -0.102 4.102 13 C -0.086 4.086 14 N -0.221 5.221 15 C -0.083 4.083 16 C 0.194 3.806 17 O -0.506 6.506 18 N -0.208 5.208 19 C -0.462 4.462 20 H 0.090 0.910 21 C -0.209 4.209 22 N -0.558 5.558 23 Si 0.810 3.190 24 H -0.195 1.195 25 H -0.193 1.193 26 H -0.204 1.204 27 C -0.085 4.085 28 C -0.105 4.105 29 H 0.058 0.942 30 H 0.072 0.928 31 H 0.124 0.876 32 H 0.054 0.946 33 H 0.077 0.923 34 H 0.152 0.848 35 H 0.126 0.874 36 H 0.252 0.748 37 H 0.136 0.864 38 H 0.133 0.867 39 H 0.095 0.905 40 H 0.110 0.890 41 H 0.087 0.913 42 H 0.050 0.950 43 H 0.127 0.873 44 H 0.125 0.875 45 H 0.230 0.770 46 H 0.088 0.912 47 H 0.085 0.915 48 H 0.045 0.955 49 H 0.110 0.890 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.370 -2.255 -20.195 20.598 hybrid contribution -1.614 -0.233 1.601 2.285 sum 1.757 -2.487 -18.594 18.842 Atomic orbital electron populations 1.22957 0.79241 1.04178 1.00714 1.87763 1.21678 1.27661 1.95615 1.22070 0.92696 0.84277 1.00806 1.21439 0.94736 0.93590 1.07350 1.20844 0.82503 0.91580 0.74536 1.90682 1.61984 1.42480 1.51731 1.45224 1.06141 1.08504 1.73576 1.21672 0.89988 0.86128 1.06670 0.88045 1.23633 0.98480 1.04863 0.91660 1.21981 0.96867 0.97869 0.95807 1.21090 1.01378 0.94897 0.92785 1.22245 0.99306 0.91673 0.95409 1.62385 1.52444 1.04180 1.03072 1.22166 0.91598 1.04524 0.90048 1.22230 0.93243 0.82623 0.82503 1.90461 1.48849 1.58614 1.52719 1.42123 1.09230 1.61162 1.08302 1.19571 0.86563 1.46282 0.93772 0.90959 1.25949 1.03147 0.96627 0.95182 1.69658 1.33299 1.48968 1.03898 0.85032 0.77505 0.78745 0.77698 1.19483 1.19269 1.20353 1.22206 0.96609 0.92806 0.96843 1.21148 1.02701 0.94658 0.92012 0.94151 0.92826 0.87582 0.94583 0.92257 0.84812 0.87446 0.74780 0.86367 0.86741 0.90459 0.89030 0.91285 0.94980 0.87260 0.87520 0.77046 0.91246 0.91478 0.95457 0.89005 0.91263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 11.01 113.37 1.25 1.70 16 2 O -0.41 -9.87 10.70 -148.98 -1.59 -11.47 16 3 C 0.08 2.00 5.23 71.98 0.38 2.37 16 4 C -0.13 -2.93 6.07 29.85 0.18 -2.75 16 5 C 0.52 14.85 7.83 87.66 0.69 15.54 16 6 O -0.59 -22.21 15.55 -3.05 -0.05 -22.26 16 7 N -0.68 -16.42 5.34 -442.81 -2.37 -18.78 16 8 C 0.06 1.56 6.11 44.93 0.27 1.84 16 9 H 0.10 3.25 7.40 -2.39 -0.02 3.24 16 10 C -0.15 -2.50 9.93 30.53 0.30 -2.20 16 11 C -0.12 -2.75 2.02 -52.20 -0.11 -2.86 16 12 C -0.06 -1.36 5.67 30.75 0.17 -1.19 16 13 C 0.04 1.27 4.96 86.41 0.43 1.70 16 14 N -0.50 -15.55 4.78 -900.21 -4.30 -19.85 16 15 C 0.05 1.66 5.82 85.56 0.50 2.16 16 16 C 0.41 18.99 7.19 87.66 0.63 19.62 16 17 O -0.62 -33.12 11.30 -3.05 -0.03 -33.16 16 18 N -0.57 -29.31 5.29 -307.00 -1.62 -30.94 16 19 C -0.33 -19.06 9.68 84.04 0.81 -18.25 16 20 H 0.07 4.49 7.16 -2.91 -0.02 4.47 16 21 C -0.01 -0.48 5.50 84.93 0.47 -0.01 16 22 N -0.92 -49.79 13.05 21.66 0.28 -49.51 16 23 Si 0.99 43.81 29.55 68.60 2.03 45.84 16 24 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 25 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 26 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 27 C 0.04 1.41 5.05 86.41 0.44 1.84 16 28 C -0.07 -1.62 5.87 30.75 0.18 -1.44 16 29 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.11 1.46 8.14 -2.38 -0.02 1.44 16 32 H 0.04 1.07 8.10 -2.39 -0.02 1.05 16 33 H 0.06 1.45 8.10 -2.39 -0.02 1.43 16 34 H 0.13 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16 36 H 0.41 7.39 6.85 -92.71 -0.64 6.75 16 37 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.08 1.33 6.19 -2.39 -0.01 1.31 16 40 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.07 1.99 8.08 -2.39 -0.02 1.97 16 42 H 0.03 1.28 5.79 -2.39 -0.01 1.27 16 43 H 0.11 3.29 8.13 -2.39 -0.02 3.27 16 44 H 0.11 3.28 8.04 -2.39 -0.02 3.26 16 45 H 0.40 19.35 7.90 -92.71 -0.73 18.62 16 46 H 0.28 14.13 8.31 -92.71 -0.77 13.35 16 47 H 0.07 2.07 8.01 -2.39 -0.02 2.05 16 48 H 0.03 1.16 5.80 -2.39 -0.01 1.15 16 49 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 50 H 0.07 1.59 8.08 -2.38 -0.02 1.57 16 Total: -1.00 -75.11 400.02 -1.47 -76.58 By element: Atomic # 1 Polarization: 45.88 SS G_CDS: -0.41 Total: 45.47 kcal Atomic # 6 Polarization: 11.48 SS G_CDS: 6.59 Total: 18.07 kcal Atomic # 7 Polarization: -111.07 SS G_CDS: -8.01 Total: -119.08 kcal Atomic # 8 Polarization: -65.21 SS G_CDS: -1.68 Total: -66.88 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -75.11 -1.47 -76.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661049714.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.388 kcal (2) G-P(sol) polarization free energy of solvation -75.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds