Wall clock time and date at job start Sat Apr 11 2020 05:47:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42905 * 113.99855 * 2 1 4 4 C 1.53000 * 109.46680 * 179.97438 * 3 2 1 5 5 C 1.50703 * 115.54845 * 294.84721 * 4 3 2 6 6 O 1.21284 * 119.99727 * 99.25383 * 5 4 3 7 7 N 1.34771 * 120.00461 * 279.24625 * 5 4 3 8 8 C 1.46499 * 120.00369 * 174.98839 * 7 5 4 9 9 C 1.52999 * 109.47277 * 180.02562 * 8 7 5 10 10 H 1.09004 * 110.78451 * 51.75677 * 9 8 7 11 11 C 1.54590 * 110.72570 * 288.50428 * 9 8 7 12 12 C 1.54001 * 105.13983 * 219.68264 * 11 9 8 13 13 N 1.48063 * 107.13851 * 358.91775 * 12 11 9 14 14 C 1.46904 * 111.15714 * 145.63213 * 13 12 11 15 15 C 1.50697 * 109.47428 * 52.60368 * 14 13 12 16 16 O 1.21297 * 119.99788 * 359.97438 * 15 14 13 17 17 N 1.34771 * 120.00220 * 179.97438 * 15 14 13 18 18 C 1.37105 * 120.00327 * 179.97438 * 17 15 14 19 19 H 1.08006 * 119.99384 * 0.02562 * 18 17 15 20 20 C 1.38943 * 120.00230 * 180.02562 * 18 17 15 21 21 N 1.31418 * 120.00056 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00191 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47259 * 59.99975 * 22 20 18 24 24 H 1.48491 * 109.47379 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.46730 * 300.00272 * 22 20 18 26 26 C 1.48530 * 105.74096 * 25.07924 * 13 12 11 27 27 C 1.52998 * 117.52046 * 80.55328 * 4 3 2 28 28 C 1.53001 * 117.49676 * 149.18588 * 4 3 2 29 29 H 1.09000 * 109.47100 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47032 * 300.00413 * 1 2 3 31 31 H 1.09000 * 109.46942 * 59.99962 * 1 2 3 32 32 H 1.08995 * 109.47178 * 60.00158 * 3 2 1 33 33 H 1.08994 * 109.47038 * 299.99766 * 3 2 1 34 34 H 0.97003 * 120.00095 * 354.99270 * 7 5 4 35 35 H 1.09000 * 109.46739 * 60.00272 * 8 7 5 36 36 H 1.08994 * 109.47323 * 300.00379 * 8 7 5 37 37 H 1.08998 * 110.31240 * 338.60077 * 11 9 8 38 38 H 1.08999 * 110.31040 * 100.66929 * 11 9 8 39 39 H 1.08997 * 109.91226 * 118.12684 * 12 11 9 40 40 H 1.08995 * 109.91941 * 239.22558 * 12 11 9 41 41 H 1.09006 * 109.46554 * 172.60195 * 14 13 12 42 42 H 1.08997 * 109.47067 * 292.60016 * 14 13 12 43 43 H 0.97003 * 119.99897 * 0.02562 * 17 15 14 44 44 H 0.96995 * 119.99966 * 179.97438 * 21 20 18 45 45 H 1.09000 * 110.66776 * 202.50272 * 26 13 12 46 46 H 1.08999 * 110.66706 * 79.53905 * 26 13 12 47 47 H 1.08999 * 117.50055 * 214.97029 * 27 4 3 48 48 H 1.08998 * 117.49965 * 359.97438 * 27 4 3 49 49 H 1.09003 * 117.49749 * 359.96829 * 28 4 3 50 50 H 1.09001 * 117.49840 * 144.99596 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 6 4.1377 0.5640 1.2348 6 8 4.4602 -0.6052 1.2299 7 7 4.3181 1.3080 2.3439 8 6 4.8004 0.6804 3.5767 9 6 4.9164 1.7382 4.6760 10 1 3.9871 2.2998 4.7720 11 6 6.1036 2.6884 4.3978 12 6 6.7473 2.9415 5.7738 13 7 5.9481 2.1963 6.7729 14 6 6.7984 1.6808 7.8543 15 6 7.6201 2.8066 8.4273 16 8 7.5087 3.9280 7.9787 17 7 8.4787 2.5674 9.4383 18 6 9.2267 3.5915 9.9593 19 1 9.1275 4.5901 9.5598 20 6 10.1122 3.3448 11.0012 21 7 10.2332 2.1297 11.4869 22 14 11.1308 4.7403 11.7115 23 1 10.2271 5.7887 12.2495 24 1 11.9898 4.2193 12.8050 25 1 11.9847 5.3224 10.6450 26 6 5.3042 1.0853 6.0265 27 6 4.2231 0.9065 -1.3375 28 6 4.3320 2.2906 -0.6944 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 4.1284 2.2592 2.3261 35 1 5.7781 0.2329 3.3980 36 1 4.0987 -0.0927 3.8895 37 1 6.8194 2.2134 3.7269 38 1 5.7465 3.6242 3.9677 39 1 7.7741 2.5757 5.7762 40 1 6.7324 4.0075 6.0003 41 1 6.1715 1.2535 8.6370 42 1 7.4617 0.9113 7.4595 43 1 8.5680 1.6705 9.7968 44 1 10.8517 1.9574 12.2139 45 1 4.4170 0.7321 6.5520 46 1 6.0082 0.2679 5.8705 47 1 5.1112 0.2746 -1.3252 48 1 3.5890 0.8092 -2.2186 49 1 3.7694 3.1041 -1.1526 50 1 5.2917 2.5692 -0.2592 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663603773.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:44 Heat of formation + Delta-G solvation = -84.010919 kcal Electronic energy + Delta-G solvation = -29124.734822 eV Core-core repulsion = 24960.015144 eV Total energy + Delta-G solvation = -4164.719678 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.51723 -39.34034 -38.27426 -37.60815 -36.60259 -35.08005 -33.90492 -31.99557 -31.20646 -29.36287 -28.76568 -27.32583 -26.17039 -25.32755 -24.04902 -23.05539 -22.70254 -21.15317 -20.54983 -19.68418 -19.05295 -17.84989 -17.60663 -16.74144 -16.43878 -16.31001 -15.95424 -15.90015 -15.67165 -15.06965 -14.87809 -14.67305 -14.48180 -14.05641 -13.94097 -13.72974 -13.56161 -13.07621 -12.93953 -12.75006 -12.62858 -12.15311 -12.04701 -11.99693 -11.84654 -11.82861 -11.52970 -11.26642 -11.13452 -11.05337 -10.99632 -10.79875 -10.70624 -10.52227 -10.42785 -10.22546 -10.15759 -9.89150 -9.49561 -9.26752 -8.40246 -8.00507 -7.92745 -6.42566 -3.83638 2.38800 2.75503 2.94974 3.19126 3.25127 3.29247 3.57029 3.88831 4.05597 4.16572 4.23730 4.29380 4.43811 4.52225 4.57223 4.75058 4.77007 4.79757 4.90162 4.96600 5.06956 5.08386 5.13128 5.24191 5.26825 5.27735 5.30467 5.41665 5.44126 5.45626 5.58543 5.64597 5.68212 5.77897 5.84286 5.86914 6.00209 6.09742 6.21959 6.27585 6.31691 6.64574 6.68716 7.22318 7.27156 7.28194 7.53925 8.02213 8.04517 8.60242 9.16555 9.52764 10.04232 10.75012 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.029141 B = 0.001689 C = 0.001658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.630468 B =16569.719137 C =16883.103199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.381 6.381 3 C 0.107 3.893 4 C -0.162 4.162 5 C 0.554 3.446 6 O -0.527 6.527 7 N -0.724 5.724 8 C 0.129 3.871 9 C -0.102 4.102 10 H 0.089 0.911 11 C -0.131 4.131 12 C 0.051 3.949 13 N -0.496 5.496 14 C 0.036 3.964 15 C 0.441 3.559 16 O -0.582 6.582 17 N -0.562 5.562 18 C -0.300 4.300 19 H 0.103 0.897 20 C 0.023 3.977 21 N -0.901 5.901 22 Si 0.931 3.069 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.274 1.274 26 C 0.041 3.959 27 C -0.135 4.135 28 C -0.155 4.155 29 H 0.088 0.912 30 H 0.042 0.958 31 H 0.041 0.959 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.401 0.599 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.069 0.931 39 H 0.039 0.961 40 H 0.101 0.899 41 H 0.090 0.910 42 H 0.049 0.951 43 H 0.392 0.608 44 H 0.272 0.728 45 H 0.083 0.917 46 H 0.046 0.954 47 H 0.104 0.896 48 H 0.105 0.895 49 H 0.106 0.894 50 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.595 -2.735 -23.353 28.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.299 6.299 3 C 0.030 3.970 4 C -0.165 4.165 5 C 0.339 3.661 6 O -0.402 6.402 7 N -0.376 5.376 8 C 0.005 3.995 9 C -0.122 4.122 10 H 0.108 0.892 11 C -0.169 4.169 12 C -0.077 4.077 13 N -0.220 5.220 14 C -0.096 4.096 15 C 0.227 3.773 16 O -0.467 6.467 17 N -0.198 5.198 18 C -0.430 4.430 19 H 0.120 0.880 20 C -0.179 4.179 21 N -0.542 5.542 22 Si 0.758 3.242 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.199 1.199 26 C -0.088 4.088 27 C -0.173 4.173 28 C -0.192 4.192 29 H 0.106 0.894 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.235 0.765 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.058 0.942 40 H 0.119 0.881 41 H 0.109 0.891 42 H 0.067 0.933 43 H 0.226 0.774 44 H 0.082 0.918 45 H 0.101 0.899 46 H 0.064 0.936 47 H 0.122 0.878 48 H 0.124 0.876 49 H 0.125 0.875 50 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -16.569 -2.752 -23.197 28.640 hybrid contribution 0.899 0.158 0.459 1.022 sum -15.670 -2.595 -22.738 27.736 Atomic orbital electron populations 1.22773 0.80796 1.03095 0.99938 1.88015 1.19639 1.26944 1.95346 1.21835 0.88872 0.85414 1.00893 1.21333 0.94144 1.06714 0.94342 1.19295 0.77641 0.86115 0.83083 1.90712 1.49584 1.16525 1.83368 1.45945 1.68254 1.12449 1.10963 1.21399 1.00096 0.95285 0.82680 1.22297 0.99968 0.96139 0.93783 0.89220 1.22634 0.96755 0.99207 0.98298 1.22871 0.94692 1.01948 0.88164 1.64604 1.29095 1.19316 1.08964 1.22101 0.95569 0.96388 0.95494 1.19723 0.84002 0.89680 0.83907 1.90488 1.69717 1.23823 1.62637 1.41850 1.35701 1.11766 1.30518 1.19649 1.17248 0.91462 1.14614 0.87961 1.25267 0.98134 0.97536 0.96975 1.69606 1.37671 1.19797 1.27153 0.85910 0.79380 0.80456 0.78421 1.19887 1.20967 1.19938 1.23217 0.99496 0.93389 0.92661 1.22959 1.02472 0.97997 0.93828 1.23167 1.01276 0.92494 1.02310 0.89380 0.93957 0.94029 0.92422 0.92141 0.76454 0.91250 0.91285 0.91739 0.91222 0.94231 0.88103 0.89136 0.93312 0.77442 0.91796 0.89893 0.93584 0.87775 0.87645 0.87522 0.87573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.30 16 2 O -0.38 -3.77 10.63 -35.23 -0.37 -4.14 16 3 C 0.11 0.78 5.76 37.16 0.21 0.99 16 4 C -0.16 -1.34 2.13 -155.66 -0.33 -1.67 16 5 C 0.55 6.27 6.91 -10.99 -0.08 6.20 16 6 O -0.53 -8.31 17.01 5.55 0.09 -8.22 16 7 N -0.72 -6.62 5.47 -60.30 -0.33 -6.95 16 8 C 0.13 1.31 5.03 -4.04 -0.02 1.29 16 9 C -0.10 -1.07 3.08 -88.76 -0.27 -1.34 16 10 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 11 C -0.13 -1.52 6.42 -25.37 -0.16 -1.69 16 12 C 0.05 0.83 5.07 -2.66 -0.01 0.82 16 13 N -0.50 -8.19 5.26 -231.75 -1.22 -9.41 16 14 C 0.04 0.65 5.49 -4.98 -0.03 0.63 16 15 C 0.44 10.38 7.36 -10.99 -0.08 10.30 16 16 O -0.58 -15.36 13.39 5.54 0.07 -15.29 16 17 N -0.56 -14.25 5.29 -10.96 -0.06 -14.31 16 18 C -0.30 -8.35 9.68 -14.93 -0.14 -8.49 16 19 H 0.10 2.97 7.16 -52.48 -0.38 2.59 16 20 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 21 N -0.90 -24.52 13.05 55.50 0.72 -23.79 16 22 Si 0.93 21.01 29.55 -169.99 -5.02 15.99 16 23 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 24 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 25 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 26 C 0.04 0.51 6.00 -1.90 -0.01 0.50 16 27 C -0.14 -1.00 9.88 -26.73 -0.26 -1.26 16 28 C -0.16 -0.86 9.92 -26.73 -0.27 -1.12 16 29 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.04 0.23 8.14 -51.93 -0.42 -0.20 16 31 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.31 8.09 -51.93 -0.42 -0.11 16 34 H 0.40 2.72 8.48 -40.82 -0.35 2.37 16 35 H 0.07 0.79 7.95 -51.93 -0.41 0.38 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.06 0.73 7.72 -51.93 -0.40 0.32 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.04 0.71 7.58 -51.93 -0.39 0.31 16 40 H 0.10 1.94 6.77 -51.93 -0.35 1.59 16 41 H 0.09 1.50 8.14 -51.93 -0.42 1.07 16 42 H 0.05 0.81 7.89 -51.93 -0.41 0.40 16 43 H 0.39 9.55 7.90 -40.82 -0.32 9.23 16 44 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 45 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 46 H 0.05 0.56 7.75 -51.93 -0.40 0.16 16 47 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 48 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 49 H 0.11 0.37 8.14 -51.93 -0.42 -0.05 16 50 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 411.67 15.07 6.20 6.20 Total: -1.00 -34.52 411.67 -8.82 -43.33 By element: Atomic # 1 Polarization: 18.09 SS G_CDS: -8.47 Total: 9.62 kcal Atomic # 6 Polarization: 7.40 SS G_CDS: -0.44 Total: 6.96 kcal Atomic # 7 Polarization: -53.58 SS G_CDS: -0.88 Total: -54.46 kcal Atomic # 8 Polarization: -27.44 SS G_CDS: -0.21 Total: -27.65 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -34.52 -8.82 -43.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663603773.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.679 kcal (2) G-P(sol) polarization free energy of solvation -34.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds