Wall clock time and date at job start Sat Apr 11 2020 05:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46505 * 119.99867 * 2 1 4 4 C 1.52998 * 109.46735 * 90.00337 * 3 2 1 5 5 N 1.46901 * 109.46979 * 180.02562 * 4 3 2 6 6 C 1.46900 * 111.00058 * 180.02562 * 5 4 3 7 7 C 1.50700 * 109.47281 * 179.97438 * 6 5 4 8 8 O 1.21290 * 119.99785 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00318 * 179.97438 * 7 6 5 10 10 C 1.37092 * 120.00165 * 179.97438 * 9 7 6 11 11 H 1.08006 * 120.00252 * 0.02562 * 10 9 7 12 12 C 1.38954 * 120.00085 * 180.02562 * 10 9 7 13 13 N 1.31412 * 120.00174 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 120.00082 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47335 * 59.99698 * 14 12 10 16 16 H 1.48494 * 109.47142 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.46782 * 299.99739 * 14 12 10 18 18 C 1.34766 * 120.00065 * 180.02562 * 2 1 3 19 19 O 1.21285 * 120.00028 * 185.43323 * 18 2 1 20 20 C 1.50700 * 120.00095 * 5.43387 * 18 2 1 21 21 C 1.54030 * 111.85605 * 292.50259 * 20 18 2 22 22 C 1.57193 * 103.35219 * 214.39793 * 21 20 18 23 23 C 1.54878 * 102.90815 * 37.60021 * 22 21 20 24 24 C 1.54332 * 104.13046 * 321.15352 * 23 22 21 25 25 H 1.09004 * 111.93914 * 147.01347 * 24 23 22 26 26 O 1.43814 * 108.58853 * 270.39228 * 24 23 22 27 27 C 1.44304 * 107.19890 * 140.23876 * 26 24 23 28 28 C 1.54620 * 111.90470 * 55.24946 * 20 18 2 29 29 H 1.08999 * 109.46883 * 95.30635 * 1 2 3 30 30 H 1.08995 * 109.46529 * 215.31093 * 1 2 3 31 31 H 1.09000 * 109.47043 * 335.30812 * 1 2 3 32 32 H 1.08999 * 109.47220 * 330.00544 * 3 2 1 33 33 H 1.08997 * 109.46958 * 210.00284 * 3 2 1 34 34 H 1.09000 * 109.47588 * 59.99935 * 4 3 2 35 35 H 1.08997 * 109.47355 * 299.99705 * 4 3 2 36 36 H 1.00897 * 111.00458 * 56.04635 * 5 4 3 37 37 H 1.09003 * 109.47129 * 299.99382 * 6 5 4 38 38 H 1.08994 * 109.47353 * 59.99764 * 6 5 4 39 39 H 0.97003 * 119.99890 * 0.02562 * 9 7 6 40 40 H 0.96992 * 120.00265 * 180.02562 * 13 12 10 41 41 H 1.08999 * 110.43408 * 333.80912 * 21 20 18 42 42 H 1.08991 * 110.43654 * 96.32084 * 21 20 18 43 43 H 1.09001 * 110.78655 * 279.18108 * 22 21 20 44 44 H 1.08993 * 110.72375 * 155.99070 * 22 21 20 45 45 H 1.08998 * 110.49309 * 202.49206 * 23 22 21 46 46 H 1.08996 * 110.49419 * 79.81857 * 23 22 21 47 47 H 1.08994 * 110.62039 * 201.50567 * 27 26 24 48 48 H 1.08998 * 110.75389 * 78.57561 * 27 26 24 49 49 H 1.09009 * 110.90769 * 217.89598 * 28 20 18 50 50 H 1.09004 * 110.90823 * 341.49766 * 28 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.4526 1.7103 1.4425 5 7 3.1865 2.9829 1.4426 6 6 3.4503 3.4384 2.8140 7 6 4.2035 4.7431 2.7739 8 8 4.4917 5.2443 1.7077 9 7 4.5559 5.3534 3.9227 10 6 5.2415 6.5400 3.8862 11 1 5.4989 6.9860 2.9368 12 6 5.6053 7.1690 5.0706 13 7 5.2926 6.6262 6.2258 14 14 6.5389 8.7862 5.0208 15 1 5.7267 9.8050 4.3084 16 1 6.8061 9.2464 6.4072 17 1 7.8268 8.5924 4.3073 18 6 2.1389 -1.1671 -0.0005 19 8 3.3477 -1.1695 0.0989 20 6 1.3905 -2.4692 -0.1247 21 6 0.5247 -2.7536 1.1171 22 6 0.5926 -4.3179 1.2564 23 6 2.0548 -4.6376 0.8583 24 6 2.3471 -3.6718 -0.3094 25 1 3.3895 -3.3532 -0.3232 26 8 1.9797 -4.3171 -1.5410 27 6 1.3592 -3.3183 -2.3775 28 6 0.4942 -2.5015 -1.3841 29 1 -0.3633 -0.0950 -1.0233 30 1 -0.3632 -0.8386 0.5940 31 1 -0.3633 0.9337 0.4293 32 1 1.6084 2.0284 -0.5137 33 1 3.1499 1.1385 -0.5139 34 1 3.0417 0.9507 1.9563 35 1 1.5002 1.8407 1.9564 36 1 2.6903 3.6866 0.9167 37 1 2.5050 3.5802 3.3379 38 1 4.0468 2.6909 3.3368 39 1 4.3250 4.9527 4.7754 40 1 5.5462 7.0654 7.0525 41 1 0.9402 -2.2555 1.9930 42 1 -0.5026 -2.4317 0.9466 43 1 -0.1077 -4.7979 0.5728 44 1 0.3967 -4.6224 2.2845 45 1 2.1429 -5.6728 0.5287 46 1 2.7287 -4.4429 1.6926 47 1 0.7327 -3.7880 -3.1357 48 1 2.1121 -2.6826 -2.8433 49 1 -0.4475 -3.0108 -1.1785 50 1 0.3159 -1.4943 -1.7607 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001664063599.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:46 Heat of formation + Delta-G solvation = -105.388760 kcal Electronic energy + Delta-G solvation = -29922.730536 eV Core-core repulsion = 25757.083845 eV Total energy + Delta-G solvation = -4165.646691 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.61824 -39.14146 -38.26103 -36.46099 -35.71446 -35.03736 -33.82684 -32.50404 -31.22496 -29.80269 -28.36500 -27.86264 -27.19786 -25.91779 -24.07193 -22.98290 -22.48808 -21.37798 -21.01672 -19.35932 -19.10976 -17.88210 -17.49022 -16.78954 -16.34920 -16.05447 -15.92783 -15.60373 -15.40145 -15.34809 -15.11676 -14.52423 -14.38588 -14.04831 -13.78104 -13.60706 -13.51284 -13.25775 -13.10930 -12.93479 -12.85918 -12.43896 -12.23795 -12.07800 -11.74704 -11.59186 -11.53033 -11.50856 -11.49931 -11.36246 -11.30497 -11.10169 -10.99511 -10.96063 -10.43457 -10.20597 -10.10041 -9.78015 -9.49165 -9.00819 -8.45150 -8.07377 -7.95202 -6.40637 -3.81515 2.28458 2.58746 3.21060 3.26550 3.31175 3.38902 3.83029 3.91719 3.97965 4.12370 4.17026 4.36301 4.42233 4.55633 4.58650 4.64210 4.74869 4.85324 4.88091 4.95590 5.01108 5.12864 5.15125 5.18355 5.21379 5.26179 5.27764 5.29654 5.39571 5.41032 5.46224 5.47511 5.53204 5.67728 5.71360 5.74902 5.84405 5.87018 5.92030 6.00039 6.20761 6.29135 6.56274 7.04031 7.17422 7.56002 7.64061 7.87118 8.06972 8.62228 9.18633 9.55092 10.06619 10.77069 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.026414 B = 0.001809 C = 0.001778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.784093 B =15474.464284 C =15742.680715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.612 5.612 3 C 0.117 3.883 4 C 0.048 3.952 5 N -0.665 5.665 6 C 0.053 3.947 7 C 0.441 3.559 8 O -0.583 6.583 9 N -0.563 5.563 10 C -0.300 4.300 11 H 0.103 0.897 12 C 0.022 3.978 13 N -0.902 5.902 14 Si 0.932 3.068 15 H -0.274 1.274 16 H -0.284 1.284 17 H -0.273 1.273 18 C 0.530 3.470 19 O -0.523 6.523 20 C -0.114 4.114 21 C -0.110 4.110 22 C -0.120 4.120 23 C -0.125 4.125 24 C 0.090 3.910 25 H 0.098 0.902 26 O -0.371 6.371 27 C 0.046 3.954 28 C -0.148 4.148 29 H 0.060 0.940 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.095 0.905 34 H 0.075 0.925 35 H 0.025 0.975 36 H 0.348 0.652 37 H 0.043 0.957 38 H 0.086 0.914 39 H 0.392 0.608 40 H 0.272 0.728 41 H 0.075 0.925 42 H 0.082 0.918 43 H 0.073 0.927 44 H 0.073 0.927 45 H 0.081 0.919 46 H 0.080 0.920 47 H 0.095 0.905 48 H 0.061 0.939 49 H 0.089 0.911 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.945 -22.743 -11.088 30.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.345 5.345 3 C -0.005 4.005 4 C -0.083 4.083 5 N -0.298 5.298 6 C -0.079 4.079 7 C 0.226 3.774 8 O -0.467 6.467 9 N -0.200 5.200 10 C -0.429 4.429 11 H 0.120 0.880 12 C -0.180 4.180 13 N -0.544 5.544 14 Si 0.759 3.241 15 H -0.199 1.199 16 H -0.210 1.210 17 H -0.199 1.199 18 C 0.317 3.683 19 O -0.398 6.398 20 C -0.118 4.118 21 C -0.147 4.147 22 C -0.157 4.157 23 C -0.162 4.162 24 C 0.032 3.968 25 H 0.116 0.884 26 O -0.290 6.290 27 C -0.030 4.030 28 C -0.186 4.186 29 H 0.078 0.922 30 H 0.097 0.903 31 H 0.094 0.906 32 H 0.097 0.903 33 H 0.113 0.887 34 H 0.093 0.907 35 H 0.043 0.957 36 H 0.167 0.833 37 H 0.061 0.939 38 H 0.104 0.896 39 H 0.225 0.775 40 H 0.082 0.918 41 H 0.094 0.906 42 H 0.100 0.900 43 H 0.091 0.909 44 H 0.091 0.909 45 H 0.099 0.901 46 H 0.098 0.902 47 H 0.113 0.887 48 H 0.079 0.921 49 H 0.108 0.892 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -15.405 -22.834 -11.678 29.918 hybrid contribution -0.730 1.251 0.991 1.755 sum -16.134 -21.583 -10.687 28.989 Atomic orbital electron populations 1.22232 0.79623 1.04037 1.02085 1.47730 1.06967 1.05977 1.73870 1.21459 0.98182 0.83636 0.97243 1.22260 0.96172 0.93276 0.96569 1.59922 1.51206 1.04878 1.13821 1.21652 0.99108 0.97246 0.89925 1.19785 0.85607 0.86919 0.85050 1.90519 1.59417 1.67138 1.29645 1.41853 1.50049 1.21348 1.06760 1.19661 1.31063 0.97672 0.94524 0.87953 1.25273 0.98159 0.99919 0.94638 1.69603 1.47111 1.40154 0.97491 0.85904 0.79884 0.81295 0.77050 1.19924 1.20989 1.19857 1.20141 0.87592 0.84631 0.75974 1.90746 1.13995 1.86740 1.48350 1.22587 0.96842 0.93956 0.98413 1.22880 0.98837 0.97209 0.95803 1.22875 0.96912 0.94198 1.01723 1.22520 0.96924 0.99975 0.96824 1.23398 0.98523 0.89851 0.85047 0.88394 1.88875 1.79682 1.33330 1.27082 1.23519 0.95218 0.90555 0.93742 1.23450 0.98915 1.02316 0.93912 0.92151 0.90257 0.90610 0.90349 0.88693 0.90696 0.95679 0.83278 0.93922 0.89567 0.77452 0.91823 0.90592 0.89996 0.90861 0.90871 0.90051 0.90161 0.88684 0.92120 0.89198 0.89245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.35 8.96 59.85 0.54 0.89 16 2 N -0.61 -5.74 2.81 -181.57 -0.51 -6.26 16 3 C 0.12 1.33 5.60 -4.04 -0.02 1.30 16 4 C 0.05 0.63 6.01 -3.82 -0.02 0.61 16 5 N -0.67 -11.13 6.12 -115.06 -0.70 -11.84 16 6 C 0.05 0.98 6.17 -4.98 -0.03 0.95 16 7 C 0.44 10.67 7.82 -10.99 -0.09 10.58 16 8 O -0.58 -16.14 15.78 5.55 0.09 -16.05 16 9 N -0.56 -14.57 5.29 -10.96 -0.06 -14.62 16 10 C -0.30 -8.48 9.68 -14.93 -0.14 -8.63 16 11 H 0.10 3.03 7.16 -52.48 -0.38 2.65 16 12 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 13 N -0.90 -24.80 13.05 55.50 0.72 -24.08 16 14 Si 0.93 21.28 29.55 -169.99 -5.02 16.26 16 15 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 16 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 17 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 18 C 0.53 5.95 6.49 -10.99 -0.07 5.88 16 19 O -0.52 -8.17 15.15 5.55 0.08 -8.08 16 20 C -0.11 -0.94 0.49 -153.34 -0.08 -1.02 16 21 C -0.11 -0.69 4.55 -23.92 -0.11 -0.80 16 22 C -0.12 -0.72 6.94 -23.46 -0.16 -0.88 16 23 C -0.12 -0.98 6.50 -25.04 -0.16 -1.14 16 24 C 0.09 0.88 3.88 -25.10 -0.10 0.78 16 25 H 0.10 1.20 6.78 -51.93 -0.35 0.85 16 26 O -0.37 -3.74 11.08 -35.23 -0.39 -4.14 16 27 C 0.05 0.35 7.72 38.21 0.29 0.64 16 28 C -0.15 -0.90 5.26 -24.83 -0.13 -1.03 16 29 H 0.06 0.25 6.39 -51.93 -0.33 -0.08 16 30 H 0.08 0.35 4.17 -51.93 -0.22 0.13 16 31 H 0.08 0.38 8.03 -51.93 -0.42 -0.04 16 32 H 0.08 0.73 8.07 -51.93 -0.42 0.31 16 33 H 0.09 1.31 7.50 -51.93 -0.39 0.92 16 34 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.35 5.73 8.43 -39.29 -0.33 5.39 16 37 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 39 H 0.39 9.68 7.90 -40.82 -0.32 9.36 16 40 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 41 H 0.08 0.55 7.93 -51.93 -0.41 0.14 16 42 H 0.08 0.34 5.99 -51.93 -0.31 0.03 16 43 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.08 0.62 8.08 -51.93 -0.42 0.20 16 46 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 47 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 49 H 0.09 0.40 7.62 -51.92 -0.40 0.01 16 50 H 0.09 0.48 5.28 -51.93 -0.27 0.20 16 LS Contribution 392.63 15.07 5.92 5.92 Total: -1.00 -34.58 392.63 -8.16 -42.74 By element: Atomic # 1 Polarization: 19.43 SS G_CDS: -7.91 Total: 11.52 kcal Atomic # 6 Polarization: 9.01 SS G_CDS: -0.38 Total: 8.63 kcal Atomic # 7 Polarization: -56.25 SS G_CDS: -0.55 Total: -56.80 kcal Atomic # 8 Polarization: -28.05 SS G_CDS: -0.22 Total: -28.27 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.58 -8.16 -42.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664063599.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.649 kcal (2) G-P(sol) polarization free energy of solvation -34.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds