Wall clock time and date at job start Sat Apr 11 2020 05:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42900 * 114.00340 * 2 1 4 4 C 1.53002 * 112.84992 * 295.06726 * 3 2 1 5 5 C 1.50706 * 109.46811 * 299.56186 * 4 3 2 6 6 O 1.21273 * 120.00201 * 354.65154 * 5 4 3 7 7 N 1.34777 * 119.99720 * 174.66493 * 5 4 3 8 8 C 1.46499 * 119.99868 * 179.97438 * 7 5 4 9 9 H 1.09004 * 110.87875 * 37.38307 * 8 7 5 10 10 C 1.55140 * 110.98995 * 273.54337 * 8 7 5 11 11 C 1.54321 * 103.02021 * 206.25761 * 10 8 7 12 12 N 1.47442 * 107.23542 * 22.27616 * 11 10 8 13 13 C 1.46900 * 111.00005 * 123.26015 * 12 11 10 14 14 C 1.50699 * 109.47192 * 69.87809 * 13 12 11 15 15 O 1.21300 * 119.99785 * 359.97438 * 14 13 12 16 16 N 1.34769 * 120.00264 * 180.02562 * 14 13 12 17 17 C 1.37099 * 120.00124 * 179.72512 * 16 14 13 18 18 H 1.08001 * 120.00194 * 0.26990 * 17 16 14 19 19 C 1.38952 * 120.00266 * 180.27020 * 17 16 14 20 20 N 1.31415 * 119.99513 * 0.02562 * 19 17 16 21 21 Si 1.86792 * 120.00142 * 179.97438 * 19 17 16 22 22 H 1.48508 * 109.47018 * 60.00126 * 21 19 17 23 23 H 1.48499 * 109.47295 * 180.02562 * 21 19 17 24 24 H 1.48493 * 109.47486 * 300.00078 * 21 19 17 25 25 C 1.47852 * 108.56406 * 0.99620 * 12 11 10 26 26 C 1.53780 * 113.61335 * 66.25859 * 3 2 1 27 27 C 1.53949 * 87.01672 * 89.23496 * 26 3 2 28 28 C 1.53777 * 113.61658 * 163.86999 * 3 2 1 29 29 H 1.09003 * 109.47392 * 179.77453 * 1 2 3 30 30 H 1.09001 * 109.47214 * 299.77406 * 1 2 3 31 31 H 1.09006 * 109.46890 * 59.77314 * 1 2 3 32 32 H 1.08998 * 109.47403 * 179.55837 * 4 3 2 33 33 H 1.08997 * 109.47191 * 59.55342 * 4 3 2 34 34 H 0.96996 * 120.00179 * 359.97438 * 7 5 4 35 35 H 1.08991 * 110.71092 * 87.86992 * 10 8 7 36 36 H 1.09003 * 110.70640 * 324.63131 * 10 8 7 37 37 H 1.09000 * 109.88806 * 262.87821 * 11 10 8 38 38 H 1.08995 * 109.89649 * 141.68847 * 11 10 8 39 39 H 1.09004 * 109.47229 * 309.88102 * 13 12 11 40 40 H 1.09000 * 109.46885 * 189.87768 * 13 12 11 41 41 H 0.97000 * 120.00186 * 359.97438 * 16 14 13 42 42 H 0.97003 * 119.99363 * 180.02562 * 20 19 17 43 43 H 1.09005 * 110.37243 * 94.73165 * 25 12 11 44 44 H 1.08997 * 110.36867 * 217.07129 * 25 12 11 45 45 H 1.09007 * 113.61201 * 203.75398 * 26 3 2 46 46 H 1.09002 * 113.61650 * 334.65592 * 26 3 2 47 47 H 1.09000 * 113.53531 * 270.80821 * 27 26 3 48 48 H 1.09000 * 113.74454 * 139.94413 * 27 26 3 49 49 H 1.08995 * 113.61877 * 25.35179 * 28 3 2 50 50 H 1.09000 * 113.61201 * 156.25430 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.7062 2.0912 -1.2771 5 6 2.2610 1.3505 -2.4666 6 8 2.9253 0.3494 -2.3017 7 7 2.0190 1.8009 -3.7137 8 6 2.5587 1.0812 -4.8699 9 1 2.5289 0.0040 -4.7056 10 6 4.0000 1.5539 -5.1955 11 6 4.1297 1.2601 -6.7049 12 7 2.7640 1.2002 -7.2572 13 6 2.5966 2.1641 -8.3531 14 6 3.3975 1.7115 -9.5468 15 8 4.0445 0.6870 -9.4900 16 7 3.3957 2.4455 -10.6771 17 6 4.1288 2.0367 -11.7611 18 1 4.7043 1.1242 -11.7108 19 6 4.1315 2.7964 -12.9245 20 7 3.4317 3.9071 -12.9855 21 14 5.1309 2.2398 -14.4012 22 1 4.6558 0.9047 -14.8456 23 1 4.9668 3.2174 -15.5069 24 1 6.5648 2.1549 -14.0250 25 6 1.8027 1.4668 -6.1659 26 6 1.7426 2.0989 1.2898 27 6 3.0313 1.4693 1.8490 28 6 3.4973 1.3176 0.3914 29 1 -0.3634 -1.0277 -0.0040 30 1 -0.3634 0.5103 0.8920 31 1 -0.3633 0.5174 -0.8880 32 1 2.1671 3.0770 -1.2157 33 1 0.6275 2.2007 -1.3882 34 1 1.4875 2.6014 -3.8456 35 1 4.7315 0.9799 -4.6269 36 1 4.1092 2.6206 -4.9998 37 1 4.6324 0.3046 -6.8548 38 1 4.6917 2.0574 -7.1910 39 1 2.9470 3.1448 -8.0312 40 1 1.5429 2.2259 -8.6249 41 1 2.8787 3.2650 -10.7224 42 1 3.4332 4.4372 -13.7979 43 1 1.5325 2.5226 -6.1477 44 1 0.9131 0.8484 -6.2845 45 1 1.8056 3.1792 1.1588 46 1 0.8397 1.7871 1.8149 47 1 2.8668 0.5185 2.3560 48 1 3.6400 2.1602 2.4324 49 1 4.0090 0.3761 0.1923 50 1 4.0409 2.1839 0.0145 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001665540059.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:52 Heat of formation + Delta-G solvation = -81.075204 kcal Electronic energy + Delta-G solvation = -29575.961914 eV Core-core repulsion = 25411.369538 eV Total energy + Delta-G solvation = -4164.592376 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.82947 -39.66021 -38.60684 -37.40460 -35.87612 -34.46243 -33.78640 -31.59338 -31.14593 -30.23573 -28.44139 -27.41386 -26.44667 -25.81826 -24.24781 -23.58209 -21.32660 -21.11891 -20.44145 -19.77285 -19.05793 -17.84539 -17.41471 -16.88885 -16.39886 -16.06999 -15.95539 -15.55403 -15.38695 -15.16019 -14.50996 -14.50140 -14.42030 -14.15809 -13.88554 -13.78932 -13.39225 -13.24256 -13.06399 -12.81372 -12.62108 -12.24308 -11.99982 -11.88606 -11.70390 -11.58628 -11.48514 -11.39860 -11.36102 -11.19868 -11.16277 -10.98780 -10.59323 -10.48763 -10.43002 -10.19761 -10.01471 -9.66497 -9.47413 -9.17162 -8.44842 -7.95459 -7.90655 -6.40144 -3.80711 2.51735 2.86270 3.21411 3.26706 3.31434 3.37305 3.92548 3.99178 4.12122 4.20447 4.27765 4.28877 4.47923 4.51165 4.69089 4.76444 4.88272 4.91159 4.95642 5.06502 5.10098 5.13319 5.17283 5.26877 5.29644 5.30770 5.34418 5.41636 5.43728 5.52803 5.63287 5.73781 5.79858 5.82502 5.86360 5.93242 5.94534 6.00860 6.10962 6.29453 6.34573 6.49954 6.96069 7.20280 7.21634 7.33754 7.56669 8.07900 8.11223 8.63955 9.20136 9.56346 10.08711 10.77677 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.037070 B = 0.001711 C = 0.001701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.139450 B =16358.470738 C =16461.306520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.345 6.345 3 C 0.110 3.890 4 C -0.160 4.160 5 C 0.514 3.486 6 O -0.515 6.515 7 N -0.727 5.727 8 C 0.138 3.862 9 H 0.103 0.897 10 C -0.153 4.153 11 C 0.058 3.942 12 N -0.502 5.502 13 C 0.041 3.959 14 C 0.444 3.556 15 O -0.575 6.575 16 N -0.566 5.566 17 C -0.298 4.298 18 H 0.102 0.898 19 C 0.021 3.979 20 N -0.904 5.904 21 Si 0.931 3.069 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.274 1.274 25 C 0.038 3.962 26 C -0.166 4.166 27 C -0.137 4.137 28 C -0.116 4.116 29 H 0.086 0.914 30 H 0.041 0.959 31 H 0.039 0.961 32 H 0.104 0.896 33 H 0.092 0.908 34 H 0.397 0.603 35 H 0.078 0.922 36 H 0.065 0.935 37 H 0.086 0.914 38 H 0.057 0.943 39 H 0.049 0.951 40 H 0.088 0.912 41 H 0.391 0.609 42 H 0.271 0.729 43 H 0.048 0.952 44 H 0.085 0.915 45 H 0.090 0.910 46 H 0.073 0.927 47 H 0.083 0.917 48 H 0.069 0.931 49 H 0.084 0.916 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.961 2.632 28.241 29.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.263 6.263 3 C 0.069 3.931 4 C -0.200 4.200 5 C 0.299 3.701 6 O -0.389 6.389 7 N -0.379 5.379 8 C 0.033 3.967 9 H 0.121 0.879 10 C -0.193 4.193 11 C -0.070 4.070 12 N -0.226 5.226 13 C -0.090 4.090 14 C 0.229 3.771 15 O -0.458 6.458 16 N -0.203 5.203 17 C -0.427 4.427 18 H 0.120 0.880 19 C -0.180 4.180 20 N -0.545 5.545 21 Si 0.758 3.242 22 H -0.199 1.199 23 H -0.210 1.210 24 H -0.200 1.200 25 C -0.090 4.090 26 C -0.203 4.203 27 C -0.174 4.174 28 C -0.153 4.153 29 H 0.105 0.895 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.122 0.878 33 H 0.111 0.889 34 H 0.231 0.769 35 H 0.097 0.903 36 H 0.084 0.916 37 H 0.104 0.896 38 H 0.076 0.924 39 H 0.067 0.933 40 H 0.106 0.894 41 H 0.224 0.776 42 H 0.081 0.919 43 H 0.066 0.934 44 H 0.104 0.896 45 H 0.108 0.892 46 H 0.091 0.909 47 H 0.102 0.898 48 H 0.088 0.912 49 H 0.103 0.897 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -7.028 0.658 28.015 28.891 hybrid contribution -0.363 1.942 -0.770 2.120 sum -7.391 2.600 27.245 28.349 Atomic orbital electron populations 1.22762 0.81772 1.02847 0.99721 1.88063 1.18892 1.24845 1.94452 1.22207 0.96093 0.83812 0.90961 1.22229 1.03034 1.00706 0.94049 1.20416 0.80644 0.85217 0.83785 1.90749 1.37941 1.24716 1.85472 1.45997 1.55668 1.30568 1.05708 1.22073 0.92748 0.97953 0.83930 0.87856 1.23232 0.97282 1.01219 0.97546 1.22703 0.90317 1.02921 0.91028 1.63234 1.03407 1.49046 1.06926 1.22089 1.01186 0.93280 0.92465 1.19724 0.86492 0.86560 0.84346 1.90531 1.46362 1.25714 1.83206 1.41847 1.43764 1.23499 1.11237 1.19651 1.24398 1.08543 0.90152 0.87985 1.25250 0.97887 0.95643 0.99209 1.69608 1.41240 1.14371 1.29297 0.85918 0.79915 0.78282 0.80105 1.19893 1.21017 1.19956 1.23249 0.96664 0.99680 0.89444 1.23609 0.99296 1.00215 0.97192 1.22817 0.96665 1.01213 0.96739 1.22897 0.93843 1.03548 0.95019 0.89503 0.94005 0.94239 0.87764 0.88940 0.76890 0.90323 0.91613 0.89608 0.92412 0.93302 0.89395 0.77566 0.91890 0.93368 0.89628 0.89199 0.90863 0.89805 0.91243 0.89726 0.89265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.60 101.05 1.07 1.26 16 2 O -0.34 -3.66 9.80 -48.99 -0.48 -4.14 16 3 C 0.11 0.91 0.38 -89.81 -0.03 0.88 16 4 C -0.16 -1.11 4.89 -27.88 -0.14 -1.25 16 5 C 0.51 5.40 7.60 -10.98 -0.08 5.31 16 6 O -0.51 -7.60 14.68 -8.19 -0.12 -7.72 16 7 N -0.73 -6.65 5.23 -51.74 -0.27 -6.92 16 8 C 0.14 1.64 3.31 -65.79 -0.22 1.42 16 9 H 0.10 1.45 7.73 -51.93 -0.40 1.05 16 10 C -0.15 -1.97 6.64 -24.91 -0.17 -2.14 16 11 C 0.06 0.95 5.65 -2.83 -0.02 0.93 16 12 N -0.50 -8.33 4.85 -232.68 -1.13 -9.46 16 13 C 0.04 0.73 5.03 -4.98 -0.03 0.71 16 14 C 0.44 10.52 7.43 -10.99 -0.08 10.44 16 15 O -0.57 -15.71 15.12 5.54 0.08 -15.63 16 16 N -0.57 -14.37 5.29 -10.96 -0.06 -14.42 16 17 C -0.30 -8.34 9.68 -14.93 -0.14 -8.48 16 18 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 19 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 20 N -0.90 -24.57 13.05 55.50 0.72 -23.85 16 21 Si 0.93 21.18 29.55 -169.99 -5.02 16.15 16 22 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 23 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 24 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 25 C 0.04 0.46 6.31 -2.30 -0.01 0.45 16 26 C -0.17 -0.99 7.22 -25.83 -0.19 -1.18 16 27 C -0.14 -0.93 8.02 -25.83 -0.21 -1.14 16 28 C -0.12 -1.00 6.59 -25.92 -0.17 -1.17 16 29 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.04 0.23 6.74 -51.93 -0.35 -0.12 16 31 H 0.04 0.26 6.81 -51.93 -0.35 -0.09 16 32 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.09 0.48 6.95 -51.93 -0.36 0.12 16 34 H 0.40 2.47 8.52 -40.82 -0.35 2.12 16 35 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.09 1.56 8.14 -51.93 -0.42 1.13 16 38 H 0.06 1.00 7.31 -51.93 -0.38 0.62 16 39 H 0.05 0.78 7.96 -51.93 -0.41 0.36 16 40 H 0.09 1.39 8.07 -51.93 -0.42 0.97 16 41 H 0.39 9.44 7.90 -40.82 -0.32 9.12 16 42 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 43 H 0.05 0.49 7.67 -51.93 -0.40 0.09 16 44 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 45 H 0.09 0.40 8.10 -51.93 -0.42 -0.02 16 46 H 0.07 0.41 6.77 -51.93 -0.35 0.06 16 47 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 49 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 50 H 0.09 0.67 8.10 -51.93 -0.42 0.25 16 LS Contribution 401.10 15.07 6.04 6.04 Total: -1.00 -34.52 401.10 -8.99 -43.51 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: -8.25 Total: 9.90 kcal Atomic # 6 Polarization: 7.03 SS G_CDS: -0.51 Total: 6.53 kcal Atomic # 7 Polarization: -53.91 SS G_CDS: -0.73 Total: -54.65 kcal Atomic # 8 Polarization: -26.97 SS G_CDS: -0.52 Total: -27.49 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.52 -8.99 -43.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665540059.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.565 kcal (2) G-P(sol) polarization free energy of solvation -34.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds