Wall clock time and date at job start Sat Apr 11 2020 05:47:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42900 * 114.00340 * 2 1 4 4 C 1.53002 * 112.84992 * 295.06726 * 3 2 1 5 5 C 1.50706 * 109.46811 * 299.56186 * 4 3 2 6 6 O 1.21273 * 120.00201 * 354.65154 * 5 4 3 7 7 N 1.34777 * 119.99720 * 174.66493 * 5 4 3 8 8 C 1.46499 * 119.99868 * 179.97438 * 7 5 4 9 9 H 1.09004 * 110.87875 * 37.38307 * 8 7 5 10 10 C 1.55140 * 110.98995 * 273.54337 * 8 7 5 11 11 C 1.54321 * 103.02021 * 206.25761 * 10 8 7 12 12 N 1.47442 * 107.23542 * 22.27616 * 11 10 8 13 13 C 1.46900 * 111.00005 * 123.26015 * 12 11 10 14 14 C 1.50699 * 109.47192 * 69.87809 * 13 12 11 15 15 O 1.21300 * 119.99785 * 359.97438 * 14 13 12 16 16 N 1.34769 * 120.00264 * 180.02562 * 14 13 12 17 17 C 1.37099 * 120.00124 * 179.72512 * 16 14 13 18 18 H 1.08001 * 120.00194 * 0.26990 * 17 16 14 19 19 C 1.38952 * 120.00266 * 180.27020 * 17 16 14 20 20 N 1.31415 * 119.99513 * 0.02562 * 19 17 16 21 21 Si 1.86792 * 120.00142 * 179.97438 * 19 17 16 22 22 H 1.48508 * 109.47018 * 60.00126 * 21 19 17 23 23 H 1.48499 * 109.47295 * 180.02562 * 21 19 17 24 24 H 1.48493 * 109.47486 * 300.00078 * 21 19 17 25 25 C 1.47852 * 108.56406 * 0.99620 * 12 11 10 26 26 C 1.53780 * 113.61335 * 66.25859 * 3 2 1 27 27 C 1.53949 * 87.01672 * 89.23496 * 26 3 2 28 28 C 1.53777 * 113.61658 * 163.86999 * 3 2 1 29 29 H 1.09003 * 109.47392 * 179.77453 * 1 2 3 30 30 H 1.09001 * 109.47214 * 299.77406 * 1 2 3 31 31 H 1.09006 * 109.46890 * 59.77314 * 1 2 3 32 32 H 1.08998 * 109.47403 * 179.55837 * 4 3 2 33 33 H 1.08997 * 109.47191 * 59.55342 * 4 3 2 34 34 H 0.96996 * 120.00179 * 359.97438 * 7 5 4 35 35 H 1.08991 * 110.71092 * 87.86992 * 10 8 7 36 36 H 1.09003 * 110.70640 * 324.63131 * 10 8 7 37 37 H 1.09000 * 109.88806 * 262.87821 * 11 10 8 38 38 H 1.08995 * 109.89649 * 141.68847 * 11 10 8 39 39 H 1.09004 * 109.47229 * 309.88102 * 13 12 11 40 40 H 1.09000 * 109.46885 * 189.87768 * 13 12 11 41 41 H 0.97000 * 120.00186 * 359.97438 * 16 14 13 42 42 H 0.97003 * 119.99363 * 180.02562 * 20 19 17 43 43 H 1.09005 * 110.37243 * 94.73165 * 25 12 11 44 44 H 1.08997 * 110.36867 * 217.07129 * 25 12 11 45 45 H 1.09007 * 113.61201 * 203.75398 * 26 3 2 46 46 H 1.09002 * 113.61650 * 334.65592 * 26 3 2 47 47 H 1.09000 * 113.53531 * 270.80821 * 27 26 3 48 48 H 1.09000 * 113.74454 * 139.94413 * 27 26 3 49 49 H 1.08995 * 113.61877 * 25.35179 * 28 3 2 50 50 H 1.09000 * 113.61201 * 156.25430 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.7062 2.0912 -1.2771 5 6 2.2610 1.3505 -2.4666 6 8 2.9253 0.3494 -2.3017 7 7 2.0190 1.8009 -3.7137 8 6 2.5587 1.0812 -4.8699 9 1 2.5289 0.0040 -4.7056 10 6 4.0000 1.5539 -5.1955 11 6 4.1297 1.2601 -6.7049 12 7 2.7640 1.2002 -7.2572 13 6 2.5966 2.1641 -8.3531 14 6 3.3975 1.7115 -9.5468 15 8 4.0445 0.6870 -9.4900 16 7 3.3957 2.4455 -10.6771 17 6 4.1288 2.0367 -11.7611 18 1 4.7043 1.1242 -11.7108 19 6 4.1315 2.7964 -12.9245 20 7 3.4317 3.9071 -12.9855 21 14 5.1309 2.2398 -14.4012 22 1 4.6558 0.9047 -14.8456 23 1 4.9668 3.2174 -15.5069 24 1 6.5648 2.1549 -14.0250 25 6 1.8027 1.4668 -6.1659 26 6 1.7426 2.0989 1.2898 27 6 3.0313 1.4693 1.8490 28 6 3.4973 1.3176 0.3914 29 1 -0.3634 -1.0277 -0.0040 30 1 -0.3634 0.5103 0.8920 31 1 -0.3633 0.5174 -0.8880 32 1 2.1671 3.0770 -1.2157 33 1 0.6275 2.2007 -1.3882 34 1 1.4875 2.6014 -3.8456 35 1 4.7315 0.9799 -4.6269 36 1 4.1092 2.6206 -4.9998 37 1 4.6324 0.3046 -6.8548 38 1 4.6917 2.0574 -7.1910 39 1 2.9470 3.1448 -8.0312 40 1 1.5429 2.2259 -8.6249 41 1 2.8787 3.2650 -10.7224 42 1 3.4332 4.4372 -13.7979 43 1 1.5325 2.5226 -6.1477 44 1 0.9131 0.8484 -6.2845 45 1 1.8056 3.1792 1.1588 46 1 0.8397 1.7871 1.8149 47 1 2.8668 0.5185 2.3560 48 1 3.6400 2.1602 2.4324 49 1 4.0090 0.3761 0.1923 50 1 4.0409 2.1839 0.0145 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001665540059.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:51 Heat of formation + Delta-G solvation = -107.786481 kcal Electronic energy + Delta-G solvation = -29577.120202 eV Core-core repulsion = 25411.369538 eV Total energy + Delta-G solvation = -4165.750664 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.53727 -40.75875 -39.89182 -38.83082 -36.47983 -35.99502 -35.30880 -33.30117 -32.47833 -31.12721 -29.53336 -28.06535 -27.86449 -26.38034 -25.97955 -24.28168 -22.46599 -22.13776 -21.43744 -20.78567 -20.33184 -19.83933 -18.21023 -17.78951 -17.65233 -17.09577 -16.93772 -16.61430 -16.47313 -16.06671 -16.02644 -15.71263 -15.59293 -15.09545 -15.01203 -14.79288 -14.61415 -14.39178 -14.34944 -13.77163 -13.55246 -13.36968 -13.27723 -13.13548 -12.93247 -12.70813 -12.54952 -12.43586 -12.40650 -12.35116 -12.26401 -12.11919 -11.91912 -11.78838 -11.67344 -11.48668 -11.08220 -10.79212 -10.32374 -10.28525 -10.06175 -9.99579 -9.24222 -8.45820 -5.94070 1.39709 1.41458 1.52107 1.74052 2.05161 2.07570 2.30382 2.80064 2.91159 3.20898 3.32402 3.49723 3.55241 3.67808 3.72463 3.76442 3.94814 4.02440 4.09986 4.27481 4.28898 4.34623 4.39736 4.41857 4.44736 4.50000 4.52807 4.61552 4.64046 4.65586 4.80146 4.82944 4.86252 4.91585 4.94641 5.00494 5.07241 5.16711 5.19813 5.28641 5.41521 5.41923 5.49601 5.85421 5.99437 6.10768 6.41836 6.62124 6.63373 7.14468 7.37540 7.58135 8.14928 8.71311 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.037070 B = 0.001711 C = 0.001701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.139450 B =16358.470738 C =16461.306520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.382 6.382 3 C 0.098 3.902 4 C -0.152 4.152 5 C 0.509 3.491 6 O -0.565 6.565 7 N -0.711 5.711 8 C 0.148 3.852 9 H 0.076 0.924 10 C -0.139 4.139 11 C 0.062 3.938 12 N -0.529 5.529 13 C 0.056 3.944 14 C 0.438 3.562 15 O -0.619 6.619 16 N -0.574 5.574 17 C -0.333 4.333 18 H 0.076 0.924 19 C -0.012 4.012 20 N -0.919 5.919 21 Si 0.991 3.009 22 H -0.273 1.273 23 H -0.269 1.269 24 H -0.273 1.273 25 C 0.046 3.954 26 C -0.149 4.149 27 C -0.136 4.136 28 C -0.126 4.126 29 H 0.084 0.916 30 H 0.060 0.940 31 H 0.047 0.953 32 H 0.135 0.865 33 H 0.118 0.882 34 H 0.417 0.583 35 H 0.066 0.934 36 H 0.086 0.914 37 H 0.052 0.948 38 H 0.042 0.958 39 H 0.075 0.925 40 H 0.115 0.885 41 H 0.397 0.603 42 H 0.277 0.723 43 H 0.082 0.918 44 H 0.094 0.906 45 H 0.115 0.885 46 H 0.079 0.921 47 H 0.070 0.930 48 H 0.084 0.916 49 H 0.046 0.954 50 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.878 5.402 29.298 31.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.301 6.301 3 C 0.057 3.943 4 C -0.192 4.192 5 C 0.297 3.703 6 O -0.443 6.443 7 N -0.365 5.365 8 C 0.041 3.959 9 H 0.094 0.906 10 C -0.179 4.179 11 C -0.066 4.066 12 N -0.254 5.254 13 C -0.075 4.075 14 C 0.226 3.774 15 O -0.504 6.504 16 N -0.212 5.212 17 C -0.463 4.463 18 H 0.094 0.906 19 C -0.212 4.212 20 N -0.560 5.560 21 Si 0.815 3.185 22 H -0.199 1.199 23 H -0.193 1.193 24 H -0.199 1.199 25 C -0.082 4.082 26 C -0.186 4.186 27 C -0.173 4.173 28 C -0.164 4.164 29 H 0.102 0.898 30 H 0.079 0.921 31 H 0.065 0.935 32 H 0.153 0.847 33 H 0.136 0.864 34 H 0.254 0.746 35 H 0.085 0.915 36 H 0.104 0.896 37 H 0.070 0.930 38 H 0.061 0.939 39 H 0.093 0.907 40 H 0.133 0.867 41 H 0.231 0.769 42 H 0.087 0.913 43 H 0.100 0.900 44 H 0.112 0.888 45 H 0.133 0.867 46 H 0.097 0.903 47 H 0.088 0.912 48 H 0.103 0.897 49 H 0.065 0.935 50 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -8.997 3.484 29.086 30.645 hybrid contribution 0.250 1.012 -1.066 1.491 sum -8.748 4.496 28.020 29.696 Atomic orbital electron populations 1.22891 0.80433 1.03211 1.00960 1.88018 1.20592 1.26686 1.94769 1.22407 0.95470 0.83608 0.92783 1.22287 1.04612 1.01040 0.91248 1.21141 0.79696 0.84668 0.84789 1.90748 1.40257 1.27105 1.86162 1.45807 1.55316 1.30830 1.04532 1.21716 0.92233 0.96830 0.85073 0.90630 1.23086 0.97860 1.02209 0.94718 1.22519 0.90227 1.00596 0.93288 1.63096 1.04176 1.49675 1.08430 1.21944 1.01324 0.94175 0.90086 1.20867 0.85762 0.85466 0.85327 1.90505 1.48145 1.27630 1.84151 1.41903 1.43928 1.23969 1.11415 1.19597 1.26009 1.08622 0.92060 0.90585 1.25994 0.98511 0.95519 1.01161 1.69660 1.41494 1.14692 1.30177 0.85018 0.78311 0.78081 0.77099 1.19868 1.19343 1.19877 1.23271 0.95518 1.01932 0.87482 1.23564 0.98704 1.01180 0.95142 1.22794 0.97674 1.01159 0.95697 1.22971 0.94475 1.02108 0.96814 0.89791 0.92135 0.93456 0.84724 0.86360 0.74564 0.91480 0.89565 0.92973 0.93913 0.90703 0.86723 0.76934 0.91312 0.89999 0.88758 0.86659 0.90260 0.91172 0.89740 0.93462 0.88130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 10.60 113.37 1.20 1.48 16 2 O -0.38 -7.98 9.80 -135.83 -1.33 -9.31 16 3 C 0.10 1.46 0.38 -10.27 0.00 1.45 16 4 C -0.15 -1.62 4.89 29.85 0.15 -1.47 16 5 C 0.51 9.83 7.60 87.66 0.67 10.50 16 6 O -0.57 -16.97 14.68 10.14 0.15 -16.82 16 7 N -0.71 -11.07 5.23 -436.00 -2.28 -13.35 16 8 C 0.15 3.32 3.31 46.38 0.15 3.48 16 9 H 0.08 2.17 7.73 -2.38 -0.02 2.15 16 10 C -0.14 -3.50 6.64 31.78 0.21 -3.29 16 11 C 0.06 2.06 5.65 86.65 0.49 2.55 16 12 N -0.53 -17.08 4.85 -890.08 -4.32 -21.40 16 13 C 0.06 1.88 5.03 85.56 0.43 2.31 16 14 C 0.44 21.03 7.43 87.66 0.65 21.68 16 15 O -0.62 -35.08 15.12 -3.09 -0.05 -35.13 16 16 N -0.57 -29.48 5.29 -306.98 -1.62 -31.11 16 17 C -0.33 -19.08 9.68 84.04 0.81 -18.27 16 18 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16 19 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 20 N -0.92 -49.37 13.05 21.66 0.28 -49.09 16 21 Si 0.99 43.27 29.55 68.60 2.03 45.30 16 22 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 23 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 24 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 25 C 0.05 0.98 6.31 86.77 0.55 1.53 16 26 C -0.15 -1.33 7.22 31.18 0.23 -1.10 16 27 C -0.14 -1.69 8.02 31.18 0.25 -1.44 16 28 C -0.13 -2.14 6.59 31.12 0.21 -1.93 16 29 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.06 0.54 6.74 -2.39 -0.02 0.53 16 31 H 0.05 0.52 6.81 -2.38 -0.02 0.51 16 32 H 0.13 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.12 0.68 6.95 -2.39 -0.02 0.67 16 34 H 0.42 3.33 8.52 -92.71 -0.79 2.54 16 35 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.04 1.51 7.31 -2.39 -0.02 1.50 16 39 H 0.08 2.16 7.96 -2.38 -0.02 2.14 16 40 H 0.11 3.27 8.07 -2.39 -0.02 3.25 16 41 H 0.40 19.09 7.90 -92.71 -0.73 18.36 16 42 H 0.28 13.97 8.31 -92.71 -0.77 13.20 16 43 H 0.08 1.27 7.67 -2.38 -0.02 1.25 16 44 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 45 H 0.12 0.47 8.10 -2.38 -0.02 0.45 16 46 H 0.08 0.64 6.77 -2.39 -0.02 0.62 16 47 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 48 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 49 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 50 H 0.10 1.39 8.10 -2.39 -0.02 1.37 16 Total: -1.00 -79.63 401.10 -1.25 -80.88 By element: Atomic # 1 Polarization: 33.30 SS G_CDS: -0.56 Total: 32.74 kcal Atomic # 6 Polarization: 10.83 SS G_CDS: 6.45 Total: 17.29 kcal Atomic # 7 Polarization: -107.00 SS G_CDS: -7.94 Total: -114.94 kcal Atomic # 8 Polarization: -60.03 SS G_CDS: -1.23 Total: -61.26 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -79.63 -1.25 -80.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665540059.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.904 kcal (2) G-P(sol) polarization free energy of solvation -79.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds