Wall clock time and date at job start Sat Apr 11 2020 05:48:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 113.99874 * 2 1 4 4 C 1.53783 * 113.61157 * 247.49870 * 3 2 1 5 5 C 1.53790 * 87.07816 * 220.01760 * 4 3 2 6 6 C 1.50696 * 113.61286 * 139.98148 * 5 4 3 7 7 O 1.21283 * 119.99952 * 262.50224 * 6 5 4 8 8 N 1.34782 * 119.99928 * 82.50415 * 6 5 4 9 9 C 1.47420 * 125.65000 * 355.10667 * 8 6 5 10 10 C 1.54905 * 104.83337 * 155.83458 * 9 8 6 11 11 C 1.55160 * 101.58054 * 37.01074 * 10 9 8 12 12 C 1.47019 * 125.64583 * 174.80163 * 8 6 5 13 13 H 1.09001 * 109.88625 * 300.51177 * 12 8 6 14 14 C 1.52998 * 109.88611 * 61.67691 * 12 8 6 15 15 N 1.46901 * 109.47368 * 184.52035 * 14 12 8 16 16 C 1.46897 * 111.00116 * 185.04046 * 15 14 12 17 17 C 1.50695 * 109.47274 * 179.97438 * 16 15 14 18 18 O 1.21294 * 120.00005 * 359.97438 * 17 16 15 19 19 N 1.34777 * 120.00367 * 179.97438 * 17 16 15 20 20 C 1.37096 * 120.00210 * 179.97438 * 19 17 16 21 21 H 1.08000 * 120.00164 * 0.02562 * 20 19 17 22 22 C 1.38955 * 120.00132 * 180.02562 * 20 19 17 23 23 N 1.31421 * 119.99669 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 120.00417 * 180.02562 * 22 20 19 25 25 H 1.48509 * 109.46983 * 89.99786 * 24 22 20 26 26 H 1.48498 * 109.47479 * 210.00228 * 24 22 20 27 27 H 1.48502 * 109.46959 * 330.00516 * 24 22 20 28 28 C 1.53780 * 113.61270 * 150.00133 * 3 2 1 29 29 H 1.08996 * 109.46910 * 299.99676 * 1 2 3 30 30 H 1.09000 * 109.46778 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.46946 * 60.00047 * 1 2 3 32 32 H 1.08994 * 112.85157 * 18.80281 * 3 2 1 33 33 H 1.08999 * 113.61801 * 334.56314 * 4 3 2 34 34 H 1.08993 * 113.61449 * 105.47289 * 4 3 2 35 35 H 1.08994 * 113.61521 * 270.88159 * 5 4 3 36 36 H 1.09004 * 110.36723 * 274.67467 * 9 8 6 37 37 H 1.09002 * 110.36470 * 36.99641 * 9 8 6 38 38 H 1.09000 * 111.00543 * 155.07982 * 10 9 8 39 39 H 1.08997 * 111.00762 * 278.90044 * 10 9 8 40 40 H 1.09000 * 110.71792 * 82.86170 * 11 10 9 41 41 H 1.09002 * 110.71889 * 205.95294 * 11 10 9 42 42 H 1.09000 * 109.47491 * 304.51629 * 14 12 8 43 43 H 1.09001 * 109.47118 * 64.51964 * 14 12 8 44 44 H 1.00893 * 111.00099 * 61.08119 * 15 14 12 45 45 H 1.08998 * 109.47121 * 299.99776 * 16 15 14 46 46 H 1.09005 * 109.47475 * 59.99235 * 16 15 14 47 47 H 0.97008 * 119.99615 * 0.02562 * 19 17 16 48 48 H 0.96996 * 119.99568 * 180.02562 * 23 22 20 49 49 H 1.09007 * 113.61489 * 254.52394 * 28 3 2 50 50 H 1.08993 * 113.61773 * 25.43226 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 2.7534 1.6489 -1.3018 5 6 3.8227 2.3182 -0.4222 6 6 5.2327 2.0718 -0.8935 7 8 5.8964 1.1923 -0.3868 8 7 5.7562 2.8290 -1.8780 9 6 5.0332 3.8578 -2.6475 10 6 6.1356 4.8183 -3.1589 11 6 7.2902 3.8297 -3.4704 12 6 7.1445 2.7700 -2.3581 13 1 7.8295 2.9922 -1.5399 14 6 7.4405 1.3802 -2.9254 15 7 8.8578 1.2969 -3.3025 16 6 9.1528 0.0176 -3.9615 17 6 10.6123 -0.0311 -4.3335 18 8 11.3355 0.9079 -4.0755 19 7 11.1141 -1.1178 -4.9529 20 6 12.4418 -1.1618 -5.2918 21 1 13.0858 -0.3258 -5.0620 22 6 12.9590 -2.2821 -5.9308 23 7 12.1753 -3.2992 -6.2108 24 14 14.7681 -2.3424 -6.3919 25 1 15.5453 -2.9299 -5.2711 26 1 14.9418 -3.1787 -7.6067 27 1 15.2556 -0.9664 -6.6644 28 6 3.3755 1.3719 0.7045 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 1.3138 2.0789 0.3237 33 1 3.1166 0.7740 -1.8411 34 1 2.2140 2.3476 -1.9412 35 1 3.6222 3.3693 -0.2150 36 1 4.5066 3.4035 -3.4869 37 1 4.3338 4.3913 -2.0038 38 1 5.8129 5.3387 -4.0606 39 1 6.4262 5.5275 -2.3838 40 1 7.1587 3.3812 -4.4550 41 1 8.2558 4.3308 -3.4023 42 1 7.2204 0.6253 -2.1706 43 1 6.8197 1.2069 -3.8044 44 1 9.4541 1.4367 -2.5008 45 1 8.9233 -0.8028 -3.2815 46 1 8.5454 -0.0761 -4.8618 47 1 10.5356 -1.8686 -5.1595 48 1 12.5364 -4.0813 -6.6565 49 1 3.3384 1.8472 1.6848 50 1 3.9088 0.4214 0.7137 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671312644.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:08 Heat of formation + Delta-G solvation = -89.502444 kcal Electronic energy + Delta-G solvation = -29435.164128 eV Core-core repulsion = 25270.206320 eV Total energy + Delta-G solvation = -4164.957808 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.90952 -39.34448 -38.19774 -37.59393 -36.04853 -35.16608 -33.77067 -31.81551 -31.19432 -30.26320 -27.64770 -26.77598 -26.14730 -25.95217 -24.69352 -23.38662 -22.43371 -21.31980 -20.32624 -19.33502 -18.89700 -17.93440 -17.72894 -16.89547 -16.50723 -16.13804 -15.71485 -15.60376 -15.41224 -15.15082 -14.64105 -14.39810 -14.24877 -14.11130 -13.82574 -13.58975 -13.47587 -13.32598 -12.93561 -12.82322 -12.54023 -12.42500 -12.18833 -12.12947 -11.66889 -11.61241 -11.52909 -11.44584 -11.33308 -11.26636 -11.12138 -11.04158 -10.84105 -10.82287 -10.35981 -10.17504 -9.96653 -9.79341 -9.46241 -8.85642 -8.37237 -7.96946 -7.90032 -6.37019 -3.77712 2.42379 2.68984 3.21247 3.29361 3.35546 3.42745 3.96897 4.01495 4.12223 4.16365 4.26011 4.31889 4.33925 4.43205 4.51986 4.68985 4.75244 4.84962 4.95605 4.97003 4.99743 5.15431 5.21046 5.22745 5.26763 5.28283 5.30427 5.38621 5.44260 5.55422 5.57545 5.63626 5.66642 5.80370 5.85532 5.89617 5.93173 5.99863 6.07578 6.20100 6.27799 6.35898 6.83073 7.24398 7.36731 7.59600 7.72524 8.01828 8.11291 8.66503 9.22558 9.59691 10.11310 10.80851 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015537 B = 0.001994 C = 0.001830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.664945 B =14042.116912 C =15294.990304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.374 6.374 3 C 0.062 3.938 4 C -0.137 4.137 5 C -0.133 4.133 6 C 0.539 3.461 7 O -0.530 6.530 8 N -0.614 5.614 9 C 0.101 3.899 10 C -0.138 4.138 11 C -0.113 4.113 12 C 0.142 3.858 13 H 0.076 0.924 14 C 0.048 3.952 15 N -0.664 5.664 16 C 0.053 3.947 17 C 0.443 3.557 18 O -0.583 6.583 19 N -0.565 5.565 20 C -0.298 4.298 21 H 0.103 0.897 22 C 0.021 3.979 23 N -0.902 5.902 24 Si 0.931 3.069 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.270 1.270 28 C -0.114 4.114 29 H 0.041 0.959 30 H 0.085 0.915 31 H 0.041 0.959 32 H 0.090 0.910 33 H 0.096 0.904 34 H 0.077 0.923 35 H 0.114 0.886 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.083 0.917 39 H 0.074 0.926 40 H 0.082 0.918 41 H 0.087 0.913 42 H 0.045 0.955 43 H 0.068 0.932 44 H 0.349 0.651 45 H 0.043 0.957 46 H 0.084 0.916 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.077 0.923 50 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.441 13.975 9.845 31.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.292 6.292 3 C 0.004 3.996 4 C -0.175 4.175 5 C -0.155 4.155 6 C 0.328 3.672 7 O -0.406 6.406 8 N -0.348 5.348 9 C -0.022 4.022 10 C -0.176 4.176 11 C -0.151 4.151 12 C 0.038 3.962 13 H 0.094 0.906 14 C -0.082 4.082 15 N -0.297 5.297 16 C -0.080 4.080 17 C 0.228 3.772 18 O -0.467 6.467 19 N -0.201 5.201 20 C -0.428 4.428 21 H 0.121 0.879 22 C -0.181 4.181 23 N -0.544 5.544 24 Si 0.758 3.242 25 H -0.205 1.205 26 H -0.210 1.210 27 H -0.194 1.194 28 C -0.152 4.152 29 H 0.060 0.940 30 H 0.104 0.896 31 H 0.060 0.940 32 H 0.108 0.892 33 H 0.114 0.886 34 H 0.096 0.904 35 H 0.131 0.869 36 H 0.088 0.912 37 H 0.092 0.908 38 H 0.102 0.898 39 H 0.093 0.907 40 H 0.101 0.899 41 H 0.106 0.894 42 H 0.063 0.937 43 H 0.087 0.913 44 H 0.168 0.832 45 H 0.061 0.939 46 H 0.103 0.897 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.096 0.904 50 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -25.555 14.062 9.668 30.729 hybrid contribution 0.219 -0.938 0.241 0.993 sum -25.336 13.124 9.910 30.206 Atomic orbital electron populations 1.22807 0.81190 1.02925 0.99844 1.88006 1.19619 1.27070 1.94485 1.23688 0.94040 0.85516 0.96389 1.23430 0.95776 1.01061 0.97213 1.22462 0.92104 1.01266 0.99628 1.19974 0.88135 0.80712 0.78416 1.90728 1.61849 1.31408 1.56622 1.48570 1.12195 1.38343 1.35736 1.22332 0.95270 0.89119 0.95461 1.22847 0.95656 0.97399 1.01715 1.22577 0.99084 0.94952 0.98448 1.21516 0.82196 0.95907 0.96556 0.90626 1.22278 0.90560 0.96020 0.99356 1.60006 1.03079 1.33406 1.33209 1.21639 0.96579 0.90470 0.99323 1.19805 0.88703 0.84446 0.84213 1.90513 1.60430 1.37057 1.58741 1.41866 1.10451 1.16062 1.51770 1.19704 0.85101 1.03058 1.34918 0.87925 1.25273 1.00271 0.95203 0.97327 1.69622 1.36076 1.06499 1.42177 0.85848 0.82100 0.78384 0.77887 1.20453 1.20955 1.19425 1.23139 0.94400 1.00792 0.96871 0.94012 0.89601 0.94014 0.89180 0.88592 0.90447 0.86853 0.91209 0.90792 0.89808 0.90717 0.89934 0.89444 0.93728 0.91313 0.83199 0.93864 0.89745 0.77456 0.91916 0.90396 0.87521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 10.85 101.05 1.10 1.26 16 2 O -0.37 -3.47 10.71 -35.23 -0.38 -3.84 16 3 C 0.06 0.45 4.31 -25.92 -0.11 0.34 16 4 C -0.14 -0.99 7.46 -25.91 -0.19 -1.18 16 5 C -0.13 -1.06 3.25 -90.96 -0.30 -1.35 16 6 C 0.54 6.37 7.19 -10.99 -0.08 6.29 16 7 O -0.53 -8.55 14.69 5.56 0.08 -8.47 16 8 N -0.61 -6.39 3.07 -163.03 -0.50 -6.89 16 9 C 0.10 0.69 6.74 -2.53 -0.02 0.68 16 10 C -0.14 -0.95 7.08 -24.58 -0.17 -1.12 16 11 C -0.11 -1.14 6.27 -24.90 -0.16 -1.29 16 12 C 0.14 1.72 3.13 -66.96 -0.21 1.51 16 13 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 14 C 0.05 0.70 5.07 -3.82 -0.02 0.68 16 15 N -0.66 -11.50 5.88 -115.06 -0.68 -12.17 16 16 C 0.05 1.00 6.16 -4.98 -0.03 0.97 16 17 C 0.44 10.89 7.82 -10.99 -0.09 10.80 16 18 O -0.58 -16.25 15.78 5.54 0.09 -16.17 16 19 N -0.56 -14.85 5.29 -10.96 -0.06 -14.90 16 20 C -0.30 -8.54 9.68 -14.93 -0.14 -8.69 16 21 H 0.10 3.07 7.16 -52.49 -0.38 2.69 16 22 C 0.02 0.57 5.50 -17.46 -0.10 0.47 16 23 N -0.90 -25.17 13.05 55.50 0.72 -24.45 16 24 Si 0.93 21.52 29.55 -169.99 -5.02 16.49 16 25 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 26 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 27 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 28 C -0.11 -0.99 7.24 -25.92 -0.19 -1.18 16 29 H 0.04 0.19 8.14 -51.93 -0.42 -0.24 16 30 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.04 0.20 8.14 -51.93 -0.42 -0.23 16 32 H 0.09 0.44 7.87 -51.93 -0.41 0.03 16 33 H 0.10 0.90 8.09 -51.93 -0.42 0.48 16 34 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.11 0.61 7.57 -51.93 -0.39 0.22 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.35 7.22 -51.93 -0.38 -0.02 16 38 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.08 0.90 7.78 -51.93 -0.40 0.50 16 41 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.04 0.74 6.56 -51.93 -0.34 0.40 16 43 H 0.07 0.97 8.02 -51.93 -0.42 0.55 16 44 H 0.35 6.36 8.49 -39.30 -0.33 6.03 16 45 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 46 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 47 H 0.39 9.90 7.90 -40.82 -0.32 9.58 16 48 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 49 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 50 H 0.11 1.24 7.43 -51.93 -0.39 0.85 16 LS Contribution 407.19 15.07 6.14 6.14 Total: -1.00 -34.76 407.19 -8.69 -43.46 By element: Atomic # 1 Polarization: 21.00 SS G_CDS: -8.38 Total: 12.62 kcal Atomic # 6 Polarization: 8.90 SS G_CDS: -0.70 Total: 8.19 kcal Atomic # 7 Polarization: -57.91 SS G_CDS: -0.51 Total: -58.42 kcal Atomic # 8 Polarization: -28.28 SS G_CDS: -0.21 Total: -28.48 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -34.76 -8.69 -43.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671312644.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.044 kcal (2) G-P(sol) polarization free energy of solvation -34.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds