Wall clock time and date at job start Sat Apr 11 2020 05:48:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 113.99874 * 2 1 4 4 C 1.53783 * 113.61157 * 247.49870 * 3 2 1 5 5 C 1.53790 * 87.07816 * 220.01760 * 4 3 2 6 6 C 1.50696 * 113.61286 * 139.98148 * 5 4 3 7 7 O 1.21283 * 119.99952 * 262.50224 * 6 5 4 8 8 N 1.34782 * 119.99928 * 82.50415 * 6 5 4 9 9 C 1.47420 * 125.65000 * 355.10667 * 8 6 5 10 10 C 1.54905 * 104.83337 * 155.83458 * 9 8 6 11 11 C 1.55160 * 101.58054 * 37.01074 * 10 9 8 12 12 C 1.47019 * 125.64583 * 174.80163 * 8 6 5 13 13 H 1.09001 * 109.88625 * 300.51177 * 12 8 6 14 14 C 1.52998 * 109.88611 * 61.67691 * 12 8 6 15 15 N 1.46901 * 109.47368 * 184.52035 * 14 12 8 16 16 C 1.46897 * 111.00116 * 185.04046 * 15 14 12 17 17 C 1.50695 * 109.47274 * 179.97438 * 16 15 14 18 18 O 1.21294 * 120.00005 * 359.97438 * 17 16 15 19 19 N 1.34777 * 120.00367 * 179.97438 * 17 16 15 20 20 C 1.37096 * 120.00210 * 179.97438 * 19 17 16 21 21 H 1.08000 * 120.00164 * 0.02562 * 20 19 17 22 22 C 1.38955 * 120.00132 * 180.02562 * 20 19 17 23 23 N 1.31421 * 119.99669 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 120.00417 * 180.02562 * 22 20 19 25 25 H 1.48509 * 109.46983 * 89.99786 * 24 22 20 26 26 H 1.48498 * 109.47479 * 210.00228 * 24 22 20 27 27 H 1.48502 * 109.46959 * 330.00516 * 24 22 20 28 28 C 1.53780 * 113.61270 * 150.00133 * 3 2 1 29 29 H 1.08996 * 109.46910 * 299.99676 * 1 2 3 30 30 H 1.09000 * 109.46778 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.46946 * 60.00047 * 1 2 3 32 32 H 1.08994 * 112.85157 * 18.80281 * 3 2 1 33 33 H 1.08999 * 113.61801 * 334.56314 * 4 3 2 34 34 H 1.08993 * 113.61449 * 105.47289 * 4 3 2 35 35 H 1.08994 * 113.61521 * 270.88159 * 5 4 3 36 36 H 1.09004 * 110.36723 * 274.67467 * 9 8 6 37 37 H 1.09002 * 110.36470 * 36.99641 * 9 8 6 38 38 H 1.09000 * 111.00543 * 155.07982 * 10 9 8 39 39 H 1.08997 * 111.00762 * 278.90044 * 10 9 8 40 40 H 1.09000 * 110.71792 * 82.86170 * 11 10 9 41 41 H 1.09002 * 110.71889 * 205.95294 * 11 10 9 42 42 H 1.09000 * 109.47491 * 304.51629 * 14 12 8 43 43 H 1.09001 * 109.47118 * 64.51964 * 14 12 8 44 44 H 1.00893 * 111.00099 * 61.08119 * 15 14 12 45 45 H 1.08998 * 109.47121 * 299.99776 * 16 15 14 46 46 H 1.09005 * 109.47475 * 59.99235 * 16 15 14 47 47 H 0.97008 * 119.99615 * 0.02562 * 19 17 16 48 48 H 0.96996 * 119.99568 * 180.02562 * 23 22 20 49 49 H 1.09007 * 113.61489 * 254.52394 * 28 3 2 50 50 H 1.08993 * 113.61773 * 25.43226 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 2.7534 1.6489 -1.3018 5 6 3.8227 2.3182 -0.4222 6 6 5.2327 2.0718 -0.8935 7 8 5.8964 1.1923 -0.3868 8 7 5.7562 2.8290 -1.8780 9 6 5.0332 3.8578 -2.6475 10 6 6.1356 4.8183 -3.1589 11 6 7.2902 3.8297 -3.4704 12 6 7.1445 2.7700 -2.3581 13 1 7.8295 2.9922 -1.5399 14 6 7.4405 1.3802 -2.9254 15 7 8.8578 1.2969 -3.3025 16 6 9.1528 0.0176 -3.9615 17 6 10.6123 -0.0311 -4.3335 18 8 11.3355 0.9079 -4.0755 19 7 11.1141 -1.1178 -4.9529 20 6 12.4418 -1.1618 -5.2918 21 1 13.0858 -0.3258 -5.0620 22 6 12.9590 -2.2821 -5.9308 23 7 12.1753 -3.2992 -6.2108 24 14 14.7681 -2.3424 -6.3919 25 1 15.5453 -2.9299 -5.2711 26 1 14.9418 -3.1787 -7.6067 27 1 15.2556 -0.9664 -6.6644 28 6 3.3755 1.3719 0.7045 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 1.3138 2.0789 0.3237 33 1 3.1166 0.7740 -1.8411 34 1 2.2140 2.3476 -1.9412 35 1 3.6222 3.3693 -0.2150 36 1 4.5066 3.4035 -3.4869 37 1 4.3338 4.3913 -2.0038 38 1 5.8129 5.3387 -4.0606 39 1 6.4262 5.5275 -2.3838 40 1 7.1587 3.3812 -4.4550 41 1 8.2558 4.3308 -3.4023 42 1 7.2204 0.6253 -2.1706 43 1 6.8197 1.2069 -3.8044 44 1 9.4541 1.4367 -2.5008 45 1 8.9233 -0.8028 -3.2815 46 1 8.5454 -0.0761 -4.8618 47 1 10.5356 -1.8686 -5.1595 48 1 12.5364 -4.0813 -6.6565 49 1 3.3384 1.8472 1.6848 50 1 3.9088 0.4214 0.7137 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671312644.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:08 Heat of formation + Delta-G solvation = -116.008928 kcal Electronic energy + Delta-G solvation = -29436.313535 eV Core-core repulsion = 25270.206320 eV Total energy + Delta-G solvation = -4166.107216 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.69779 -40.27826 -39.91435 -38.49219 -36.75998 -36.59486 -35.80395 -33.31054 -32.63091 -31.37009 -28.40906 -28.05822 -26.76333 -26.59210 -26.33350 -24.63407 -23.38225 -22.03524 -21.31177 -20.91549 -20.00136 -19.72899 -18.60021 -17.95066 -17.63809 -17.11465 -16.86255 -16.57151 -16.47373 -16.27579 -16.00091 -15.85206 -15.37653 -15.19277 -15.00863 -14.89095 -14.74257 -14.23296 -14.03491 -13.69384 -13.51304 -13.48506 -13.28465 -13.22297 -13.09341 -12.87407 -12.77270 -12.61542 -12.44090 -12.19495 -12.12576 -11.94064 -11.86267 -11.83632 -11.68621 -11.57662 -11.53255 -10.80372 -10.41626 -10.41193 -10.05048 -9.71137 -9.42698 -8.48814 -5.98278 1.36805 1.40334 1.53828 1.55233 1.86834 2.00225 2.27948 2.85160 2.97894 3.17509 3.37875 3.46191 3.52432 3.62508 3.69923 3.76151 3.87154 3.92052 4.05803 4.22626 4.24459 4.31599 4.35263 4.40383 4.46679 4.48815 4.54996 4.60741 4.66739 4.71346 4.72669 4.77832 4.86313 4.89342 4.96237 5.05170 5.05737 5.06758 5.18369 5.24540 5.37004 5.38761 5.44614 5.78249 6.01769 6.23101 6.35513 6.54283 6.56197 7.08939 7.14193 7.51495 8.06225 8.68755 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015537 B = 0.001994 C = 0.001830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.664945 B =14042.116912 C =15294.990304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.409 6.409 3 C 0.068 3.932 4 C -0.131 4.131 5 C -0.121 4.121 6 C 0.529 3.471 7 O -0.587 6.587 8 N -0.611 5.611 9 C 0.096 3.904 10 C -0.126 4.126 11 C -0.111 4.111 12 C 0.141 3.859 13 H 0.056 0.944 14 C 0.058 3.942 15 N -0.666 5.666 16 C 0.066 3.934 17 C 0.440 3.560 18 O -0.619 6.619 19 N -0.572 5.572 20 C -0.335 4.335 21 H 0.081 0.919 22 C -0.015 4.015 23 N -0.921 5.921 24 Si 0.997 3.003 25 H -0.271 1.271 26 H -0.269 1.269 27 H -0.271 1.271 28 C -0.127 4.127 29 H 0.056 0.944 30 H 0.086 0.914 31 H 0.055 0.945 32 H 0.126 0.874 33 H 0.065 0.935 34 H 0.111 0.889 35 H 0.153 0.847 36 H 0.082 0.918 37 H 0.108 0.892 38 H 0.107 0.893 39 H 0.081 0.919 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.020 0.980 43 H 0.077 0.923 44 H 0.341 0.659 45 H 0.054 0.946 46 H 0.106 0.894 47 H 0.396 0.604 48 H 0.278 0.722 49 H 0.091 0.909 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.795 15.898 9.216 34.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.328 6.328 3 C 0.010 3.990 4 C -0.169 4.169 5 C -0.142 4.142 6 C 0.319 3.681 7 O -0.467 6.467 8 N -0.344 5.344 9 C -0.025 4.025 10 C -0.164 4.164 11 C -0.150 4.150 12 C 0.037 3.963 13 H 0.074 0.926 14 C -0.072 4.072 15 N -0.298 5.298 16 C -0.067 4.067 17 C 0.227 3.773 18 O -0.506 6.506 19 N -0.209 5.209 20 C -0.464 4.464 21 H 0.099 0.901 22 C -0.215 4.215 23 N -0.562 5.562 24 Si 0.820 3.180 25 H -0.197 1.197 26 H -0.194 1.194 27 H -0.196 1.196 28 C -0.165 4.165 29 H 0.075 0.925 30 H 0.105 0.895 31 H 0.074 0.926 32 H 0.143 0.857 33 H 0.084 0.916 34 H 0.130 0.870 35 H 0.171 0.829 36 H 0.100 0.900 37 H 0.126 0.874 38 H 0.125 0.875 39 H 0.100 0.900 40 H 0.094 0.906 41 H 0.095 0.905 42 H 0.039 0.961 43 H 0.095 0.905 44 H 0.159 0.841 45 H 0.072 0.928 46 H 0.124 0.876 47 H 0.229 0.771 48 H 0.088 0.912 49 H 0.110 0.890 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -27.965 16.000 9.016 33.456 hybrid contribution 0.928 -1.562 0.460 1.874 sum -27.037 14.438 9.476 32.082 Atomic orbital electron populations 1.22981 0.79512 1.03566 1.01224 1.87970 1.21650 1.28554 1.94633 1.23811 0.93719 0.85711 0.95756 1.23374 0.95502 1.00535 0.97492 1.22559 0.89336 1.03145 0.99130 1.20801 0.89413 0.79872 0.78010 1.90705 1.63581 1.33900 1.58550 1.48687 1.11620 1.38685 1.35418 1.22658 0.95469 0.88272 0.96102 1.22847 0.93853 0.96703 1.02989 1.22509 1.00253 0.95143 0.97051 1.21405 0.83383 0.94919 0.96614 0.92596 1.22250 0.88743 0.97234 0.98937 1.60048 1.04505 1.32262 1.32939 1.21508 0.92802 0.91791 1.00573 1.20691 0.90654 0.83246 0.82664 1.90480 1.62069 1.38195 1.59835 1.41933 1.10020 1.16700 1.52292 1.19701 0.86177 1.03394 1.37165 0.90124 1.26121 1.04642 0.94324 0.96408 1.69688 1.37804 1.06805 1.41894 0.84871 0.76620 0.78371 0.78112 1.19669 1.19382 1.19588 1.23147 0.95621 0.99386 0.98339 0.92506 0.89541 0.92632 0.85658 0.91648 0.87049 0.82925 0.89980 0.87403 0.87461 0.90025 0.90601 0.90523 0.96130 0.90497 0.84086 0.92833 0.87647 0.77054 0.91240 0.89001 0.91665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 10.85 113.37 1.23 1.46 16 2 O -0.41 -7.28 10.71 -148.98 -1.60 -8.87 16 3 C 0.07 0.84 4.31 31.12 0.13 0.97 16 4 C -0.13 -1.60 7.46 31.12 0.23 -1.37 16 5 C -0.12 -1.67 3.25 -11.01 -0.04 -1.71 16 6 C 0.53 12.44 7.19 87.65 0.63 13.07 16 7 O -0.59 -20.22 14.69 -3.04 -0.04 -20.26 16 8 N -0.61 -12.05 3.07 -788.09 -2.42 -14.46 16 9 C 0.10 0.97 6.74 86.85 0.59 1.56 16 10 C -0.13 -1.34 7.08 31.99 0.23 -1.11 16 11 C -0.11 -2.15 6.27 31.78 0.20 -1.95 16 12 C 0.14 3.46 3.13 45.34 0.14 3.60 16 13 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 14 C 0.06 1.75 5.07 86.30 0.44 2.19 16 15 N -0.67 -23.74 5.88 -517.94 -3.05 -26.79 16 16 C 0.07 2.55 6.16 85.56 0.53 3.08 16 17 C 0.44 22.27 7.82 87.66 0.69 22.96 16 18 O -0.62 -35.74 15.78 -3.07 -0.05 -35.79 16 19 N -0.57 -30.91 5.29 -306.98 -1.62 -32.53 16 20 C -0.33 -19.68 9.68 84.04 0.81 -18.87 16 21 H 0.08 5.01 7.16 -2.91 -0.02 4.99 16 22 C -0.02 -0.84 5.50 84.93 0.47 -0.38 16 23 N -0.92 -51.26 13.05 21.67 0.28 -50.98 16 24 Si 1.00 44.03 29.55 68.60 2.03 46.06 16 25 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 26 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 27 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 28 C -0.13 -2.15 7.24 31.12 0.23 -1.93 16 29 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.13 0.67 7.87 -2.39 -0.02 0.65 16 33 H 0.06 1.22 8.09 -2.39 -0.02 1.20 16 34 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.15 0.93 7.57 -2.39 -0.02 0.91 16 36 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.11 0.43 7.22 -2.39 -0.02 0.41 16 38 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.08 1.57 7.78 -2.39 -0.02 1.55 16 41 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.02 0.72 6.56 -2.39 -0.02 0.71 16 43 H 0.08 2.16 8.02 -2.39 -0.02 2.14 16 44 H 0.34 13.10 8.49 -89.70 -0.76 12.34 16 45 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 46 H 0.11 3.66 8.14 -2.38 -0.02 3.64 16 47 H 0.40 20.42 7.90 -92.70 -0.73 19.69 16 48 H 0.28 14.44 8.31 -92.71 -0.77 13.67 16 49 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 50 H 0.06 1.66 7.43 -2.39 -0.02 1.65 16 Total: -1.00 -80.12 407.19 -0.51 -80.63 By element: Atomic # 1 Polarization: 41.98 SS G_CDS: -0.54 Total: 41.44 kcal Atomic # 6 Polarization: 15.07 SS G_CDS: 6.50 Total: 21.57 kcal Atomic # 7 Polarization: -117.96 SS G_CDS: -6.80 Total: -124.77 kcal Atomic # 8 Polarization: -63.24 SS G_CDS: -1.69 Total: -64.93 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -80.12 -0.51 -80.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671312644.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.380 kcal (2) G-P(sol) polarization free energy of solvation -80.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds