Wall clock time and date at job start Sat Apr 11 2020 05:48:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.45756 * 117.94485 * 2 1 4 4 C 1.52908 * 110.49534 * 199.06147 * 3 2 1 5 5 C 1.53346 * 108.68435 * 309.27969 * 4 3 2 6 6 H 1.08997 * 109.70636 * 307.76518 * 5 4 3 7 7 C 1.50706 * 109.67414 * 187.25215 * 5 4 3 8 8 O 1.21285 * 119.99812 * 1.03456 * 7 5 4 9 9 N 1.34770 * 120.00354 * 181.03425 * 7 5 4 10 10 C 1.46495 * 120.00329 * 184.60665 * 9 7 5 11 11 C 1.53009 * 109.54248 * 56.85140 * 10 9 7 12 12 N 1.46505 * 109.46810 * 58.68921 * 11 10 9 13 13 C 1.36932 * 119.99870 * 174.82886 * 12 11 10 14 14 H 1.08001 * 120.00252 * 359.97438 * 13 12 11 15 15 C 1.38811 * 120.00160 * 180.02562 * 13 12 11 16 16 N 1.31620 * 119.99934 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00062 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47285 * 89.99662 * 17 15 13 19 19 H 1.48501 * 109.47047 * 209.99629 * 17 15 13 20 20 H 1.48500 * 109.47310 * 329.99662 * 17 15 13 21 21 C 1.53176 * 109.54482 * 296.58784 * 10 9 7 22 22 C 1.53091 * 109.16387 * 297.11354 * 21 10 9 23 23 O 1.42909 * 109.41211 * 302.39063 * 22 21 10 24 24 C 1.42899 * 114.09869 * 61.15436 * 23 22 21 25 25 C 1.53088 * 109.42076 * 298.84538 * 24 23 22 26 26 C 1.53067 * 108.42820 * 67.51885 * 5 4 3 27 27 C 1.33356 * 117.94571 * 180.02562 * 2 1 3 28 28 O 1.21272 * 118.24864 * 357.79293 * 27 2 1 29 29 H 1.08996 * 109.46886 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.46884 * 299.97592 * 1 2 3 31 31 H 1.09003 * 109.47014 * 59.97643 * 1 2 3 32 32 H 1.08993 * 109.30238 * 319.38877 * 3 2 1 33 33 H 1.09001 * 109.29796 * 78.97650 * 3 2 1 34 34 H 1.08998 * 109.60924 * 189.51336 * 4 3 2 35 35 H 1.08998 * 109.58618 * 69.03530 * 4 3 2 36 36 H 0.97008 * 119.99941 * 4.32888 * 9 7 5 37 37 H 1.09000 * 109.47207 * 178.68816 * 11 10 9 38 38 H 1.08995 * 109.46966 * 298.69120 * 11 10 9 39 39 H 0.96999 * 119.99646 * 354.82234 * 12 11 10 40 40 H 0.97003 * 120.00018 * 179.97438 * 16 15 13 41 41 H 1.08999 * 109.52204 * 57.01606 * 21 10 9 42 42 H 1.08999 * 109.52427 * 177.20507 * 21 10 9 43 43 H 1.08996 * 109.48377 * 182.40732 * 22 21 10 44 44 H 1.08999 * 109.48076 * 62.36630 * 22 21 10 45 45 H 1.09000 * 109.48173 * 178.85406 * 24 23 22 46 46 H 1.09007 * 109.48223 * 58.82780 * 24 23 22 47 47 H 1.09001 * 109.52273 * 297.70499 * 25 24 23 48 48 H 1.08994 * 109.57973 * 177.54615 * 25 24 23 49 49 H 1.09008 * 109.40139 * 71.22162 * 26 5 4 50 50 H 1.08999 * 109.40696 * 191.05323 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1481 1.2876 0.0000 4 6 3.5949 1.1262 -0.4678 5 6 4.2493 -0.0014 0.3396 6 1 4.1093 0.1804 1.4051 7 6 5.7218 -0.0625 0.0245 8 8 6.2087 0.7300 -0.7538 9 7 6.4975 -0.9976 0.6076 10 6 7.9447 -0.9945 0.3804 11 6 8.5248 0.3596 0.7938 12 7 8.2266 0.6078 2.2066 13 6 8.7388 1.7140 2.8304 14 1 9.3628 2.4033 2.2810 15 6 8.4567 1.9488 4.1691 16 7 7.6966 1.1085 4.8387 17 14 9.1559 3.4575 5.0201 18 1 8.2067 4.5906 4.8779 19 1 9.3619 3.1622 6.4608 20 1 10.4551 3.8192 4.3983 21 6 8.2310 -1.2452 -1.1033 22 6 7.7153 -2.6346 -1.4870 23 8 8.3377 -3.6180 -0.6576 24 6 8.0663 -3.4618 0.7366 25 6 8.5960 -2.1057 1.2096 26 6 3.5839 -1.3240 -0.0492 27 6 2.0900 -1.1781 -0.0005 28 8 1.4160 -2.1854 0.0402 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5134 0.8902 31 1 -0.3633 0.5142 -0.8898 32 1 1.6271 1.9718 -0.6696 33 1 2.1431 1.6980 1.0098 34 1 4.1384 2.0566 -0.3035 35 1 3.6101 0.8733 -1.5279 36 1 6.0980 -1.6704 1.1811 37 1 9.6047 0.3527 0.6462 38 1 8.0799 1.1466 0.1849 39 1 7.6664 -0.0115 2.7000 40 1 7.4998 1.2724 5.7744 41 1 7.7248 -0.4900 -1.7046 42 1 9.3052 -1.1935 -1.2808 43 1 7.9544 -2.8356 -2.5312 44 1 6.6349 -2.6726 -1.3474 45 1 8.5582 -4.2588 1.2942 46 1 6.9904 -3.5107 0.9053 47 1 9.6776 -2.0713 1.0788 48 1 8.3519 -1.9652 2.2625 49 1 3.8880 -1.5992 -1.0591 50 1 3.8931 -2.1034 0.6472 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673732787.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:21 Heat of formation + Delta-G solvation = -103.550349 kcal Electronic energy + Delta-G solvation = -31997.699226 eV Core-core repulsion = 27832.132255 eV Total energy + Delta-G solvation = -4165.566971 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.03107 -40.23839 -38.50602 -36.54210 -35.73733 -34.25256 -33.68813 -31.66263 -31.06326 -30.42521 -29.78568 -27.56685 -26.52173 -24.85218 -23.78019 -23.60520 -22.99893 -21.51306 -20.53764 -19.05831 -18.84161 -17.50653 -17.26319 -16.75475 -16.46581 -15.98942 -15.91956 -15.79124 -15.41978 -15.03761 -14.61758 -14.51646 -14.29585 -13.95008 -13.88376 -13.51283 -13.37388 -13.17099 -12.84577 -12.75634 -12.50194 -12.40046 -12.30965 -11.95713 -11.90359 -11.70844 -11.57489 -11.20475 -11.14029 -11.09839 -10.94286 -10.84399 -10.54860 -10.35209 -10.12650 -10.08287 -9.73351 -9.51052 -9.25921 -8.94269 -8.83981 -8.62111 -6.90241 -5.79414 -3.05877 2.44945 2.79932 2.87467 3.32322 3.41622 3.47471 3.48599 3.95455 4.29160 4.43361 4.54078 4.56408 4.59440 4.81908 4.99343 5.04895 5.06235 5.10016 5.10737 5.13588 5.19844 5.27963 5.30752 5.37529 5.43929 5.52502 5.55523 5.58062 5.66672 5.74704 5.77469 5.88421 5.93028 6.03263 6.04800 6.09330 6.14902 6.22638 6.29427 6.46650 6.48459 6.81820 7.03041 7.21475 7.25970 7.69289 7.76678 7.95522 8.40078 8.48768 9.51841 10.08825 10.44772 11.43671 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.008427 B = 0.004454 C = 0.003282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3321.772237 B = 6285.537949 C = 8530.512334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.607 5.607 3 C 0.112 3.888 4 C -0.114 4.114 5 C -0.114 4.114 6 H 0.110 0.890 7 C 0.532 3.468 8 O -0.528 6.528 9 N -0.713 5.713 10 C 0.174 3.826 11 C 0.142 3.858 12 N -0.726 5.726 13 C -0.232 4.232 14 H 0.068 0.932 15 C -0.014 4.014 16 N -0.936 5.936 17 Si 0.905 3.095 18 H -0.291 1.291 19 H -0.292 1.292 20 H -0.283 1.283 21 C -0.163 4.163 22 C 0.066 3.934 23 O -0.385 6.385 24 C 0.061 3.939 25 C -0.154 4.154 26 C -0.124 4.124 27 C 0.522 3.478 28 O -0.557 6.557 29 H 0.091 0.909 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.080 0.920 33 H 0.071 0.929 34 H 0.100 0.900 35 H 0.077 0.923 36 H 0.395 0.605 37 H 0.026 0.974 38 H 0.045 0.955 39 H 0.381 0.619 40 H 0.254 0.746 41 H 0.094 0.906 42 H 0.077 0.923 43 H 0.088 0.912 44 H 0.046 0.954 45 H 0.094 0.906 46 H 0.046 0.954 47 H 0.086 0.914 48 H 0.091 0.909 49 H 0.103 0.897 50 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.819 -5.664 -11.797 16.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.340 5.340 3 C -0.011 4.011 4 C -0.152 4.152 5 C -0.135 4.135 6 H 0.128 0.872 7 C 0.318 3.682 8 O -0.405 6.405 9 N -0.364 5.364 10 C 0.089 3.911 11 C 0.014 3.986 12 N -0.370 5.370 13 C -0.363 4.363 14 H 0.086 0.914 15 C -0.210 4.210 16 N -0.586 5.586 17 Si 0.736 3.264 18 H -0.219 1.219 19 H -0.219 1.219 20 H -0.208 1.208 21 C -0.202 4.202 22 C -0.010 4.010 23 O -0.304 6.304 24 C -0.016 4.016 25 C -0.192 4.192 26 C -0.164 4.164 27 C 0.311 3.689 28 O -0.435 6.435 29 H 0.109 0.891 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.099 0.901 33 H 0.090 0.910 34 H 0.118 0.882 35 H 0.095 0.905 36 H 0.229 0.771 37 H 0.044 0.956 38 H 0.063 0.937 39 H 0.215 0.785 40 H 0.063 0.937 41 H 0.112 0.888 42 H 0.096 0.904 43 H 0.107 0.893 44 H 0.065 0.935 45 H 0.112 0.888 46 H 0.064 0.936 47 H 0.105 0.895 48 H 0.110 0.890 49 H 0.122 0.878 50 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -9.559 -5.589 -12.370 16.602 hybrid contribution -0.113 0.786 1.332 1.550 sum -9.672 -4.803 -11.038 15.442 Atomic orbital electron populations 1.21775 0.79642 1.04628 1.01343 1.47230 1.07566 1.06297 1.72890 1.21509 0.93119 0.84162 1.02292 1.21696 0.93356 0.99982 1.00138 1.21486 0.92805 0.95866 1.03376 0.87232 1.20052 0.87677 0.80267 0.80209 1.90638 1.74813 1.39971 1.35052 1.45997 1.07550 1.32300 1.50566 1.20606 0.79332 0.97105 0.94086 1.21083 0.96729 0.92861 0.87934 1.42219 1.60967 1.28449 1.05395 1.19224 1.23951 1.00248 0.92884 0.91365 1.24667 1.00769 0.98844 0.96693 1.69639 1.42140 1.37503 1.09284 0.86212 0.78575 0.82724 0.78842 1.21855 1.21857 1.20825 1.22550 1.02741 0.98121 0.96775 1.22504 0.96281 0.87773 0.94489 1.87902 1.73712 1.51736 1.17084 1.22613 0.99340 0.97569 0.82088 1.22424 1.02010 0.93378 1.01406 1.21644 0.91169 0.98336 1.05208 1.19990 0.90609 0.82817 0.75470 1.90699 1.66169 1.35823 1.50859 0.89073 0.92100 0.92221 0.90144 0.91039 0.88190 0.90452 0.77050 0.95638 0.93718 0.78474 0.93666 0.88781 0.90435 0.89346 0.93549 0.88802 0.93582 0.89543 0.89013 0.87844 0.87701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.60 10.48 59.85 0.63 1.23 16 2 N -0.61 -6.29 3.21 -182.86 -0.59 -6.88 16 3 C 0.11 0.98 6.40 -4.49 -0.03 0.95 16 4 C -0.11 -1.18 4.71 -26.60 -0.13 -1.31 16 5 C -0.11 -1.32 2.61 -91.56 -0.24 -1.56 16 6 H 0.11 1.34 8.13 -51.93 -0.42 0.92 16 7 C 0.53 7.70 6.55 -10.99 -0.07 7.63 16 8 O -0.53 -9.16 12.15 5.55 0.07 -9.09 16 9 N -0.71 -9.85 3.74 -47.43 -0.18 -10.02 16 10 C 0.17 2.67 0.32 -131.63 -0.04 2.63 16 11 C 0.14 2.85 4.91 -4.03 -0.02 2.83 16 12 N -0.73 -17.43 5.15 -59.90 -0.31 -17.73 16 13 C -0.23 -6.36 9.99 -15.06 -0.15 -6.51 16 14 H 0.07 1.87 7.83 -52.49 -0.41 1.45 16 15 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 16 N -0.94 -27.23 13.06 55.49 0.72 -26.51 16 17 Si 0.90 22.20 29.55 -169.99 -5.02 17.18 16 18 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 19 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 21 C -0.16 -2.24 4.81 -26.59 -0.13 -2.37 16 22 C 0.07 0.80 6.68 37.20 0.25 1.05 16 23 O -0.39 -5.13 10.77 -35.23 -0.38 -5.51 16 24 C 0.06 0.73 6.67 37.20 0.25 0.98 16 25 C -0.15 -2.21 4.77 -26.59 -0.13 -2.33 16 26 C -0.12 -1.30 5.16 -28.10 -0.15 -1.44 16 27 C 0.52 6.46 7.47 -11.87 -0.09 6.37 16 28 O -0.56 -8.69 15.95 5.56 0.09 -8.60 16 29 H 0.09 0.94 6.59 -51.93 -0.34 0.60 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.08 0.55 8.10 -51.93 -0.42 0.13 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.10 1.17 7.89 -51.93 -0.41 0.76 16 35 H 0.08 0.80 8.12 -51.93 -0.42 0.38 16 36 H 0.40 4.76 7.01 -40.82 -0.29 4.48 16 37 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.05 0.99 6.15 -51.93 -0.32 0.68 16 39 H 0.38 9.36 6.53 -40.82 -0.27 9.09 16 40 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 41 H 0.09 1.40 6.21 -51.93 -0.32 1.08 16 42 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.05 0.54 7.75 -51.93 -0.40 0.13 16 45 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 46 H 0.05 0.50 7.04 -51.93 -0.37 0.13 16 47 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 48 H 0.09 1.47 7.16 -51.93 -0.37 1.10 16 49 H 0.10 1.02 8.09 -51.92 -0.42 0.60 16 50 H 0.10 1.02 7.84 -51.93 -0.41 0.61 16 LS Contribution 385.80 15.07 5.81 5.81 Total: -1.00 -33.73 385.80 -8.02 -41.75 By element: Atomic # 1 Polarization: 20.07 SS G_CDS: -8.11 Total: 11.96 kcal Atomic # 6 Polarization: 7.78 SS G_CDS: -0.14 Total: 7.64 kcal Atomic # 7 Polarization: -60.79 SS G_CDS: -0.35 Total: -61.14 kcal Atomic # 8 Polarization: -22.98 SS G_CDS: -0.22 Total: -23.21 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.73 -8.02 -41.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673732787.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.800 kcal (2) G-P(sol) polarization free energy of solvation -33.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds