Wall clock time and date at job start Sat Apr 11 2020 05:48:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.45756 * 117.94485 * 2 1 4 4 C 1.52908 * 110.49534 * 199.06147 * 3 2 1 5 5 C 1.53346 * 108.68435 * 309.27969 * 4 3 2 6 6 H 1.08997 * 109.70636 * 307.76518 * 5 4 3 7 7 C 1.50706 * 109.67414 * 187.25215 * 5 4 3 8 8 O 1.21285 * 119.99812 * 1.03456 * 7 5 4 9 9 N 1.34770 * 120.00354 * 181.03425 * 7 5 4 10 10 C 1.46495 * 120.00329 * 184.60665 * 9 7 5 11 11 C 1.53009 * 109.54248 * 56.85140 * 10 9 7 12 12 N 1.46505 * 109.46810 * 58.68921 * 11 10 9 13 13 C 1.36932 * 119.99870 * 174.82886 * 12 11 10 14 14 H 1.08001 * 120.00252 * 359.97438 * 13 12 11 15 15 C 1.38811 * 120.00160 * 180.02562 * 13 12 11 16 16 N 1.31620 * 119.99934 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00062 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47285 * 89.99662 * 17 15 13 19 19 H 1.48501 * 109.47047 * 209.99629 * 17 15 13 20 20 H 1.48500 * 109.47310 * 329.99662 * 17 15 13 21 21 C 1.53176 * 109.54482 * 296.58784 * 10 9 7 22 22 C 1.53091 * 109.16387 * 297.11354 * 21 10 9 23 23 O 1.42909 * 109.41211 * 302.39063 * 22 21 10 24 24 C 1.42899 * 114.09869 * 61.15436 * 23 22 21 25 25 C 1.53088 * 109.42076 * 298.84538 * 24 23 22 26 26 C 1.53067 * 108.42820 * 67.51885 * 5 4 3 27 27 C 1.33356 * 117.94571 * 180.02562 * 2 1 3 28 28 O 1.21272 * 118.24864 * 357.79293 * 27 2 1 29 29 H 1.08996 * 109.46886 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.46884 * 299.97592 * 1 2 3 31 31 H 1.09003 * 109.47014 * 59.97643 * 1 2 3 32 32 H 1.08993 * 109.30238 * 319.38877 * 3 2 1 33 33 H 1.09001 * 109.29796 * 78.97650 * 3 2 1 34 34 H 1.08998 * 109.60924 * 189.51336 * 4 3 2 35 35 H 1.08998 * 109.58618 * 69.03530 * 4 3 2 36 36 H 0.97008 * 119.99941 * 4.32888 * 9 7 5 37 37 H 1.09000 * 109.47207 * 178.68816 * 11 10 9 38 38 H 1.08995 * 109.46966 * 298.69120 * 11 10 9 39 39 H 0.96999 * 119.99646 * 354.82234 * 12 11 10 40 40 H 0.97003 * 120.00018 * 179.97438 * 16 15 13 41 41 H 1.08999 * 109.52204 * 57.01606 * 21 10 9 42 42 H 1.08999 * 109.52427 * 177.20507 * 21 10 9 43 43 H 1.08996 * 109.48377 * 182.40732 * 22 21 10 44 44 H 1.08999 * 109.48076 * 62.36630 * 22 21 10 45 45 H 1.09000 * 109.48173 * 178.85406 * 24 23 22 46 46 H 1.09007 * 109.48223 * 58.82780 * 24 23 22 47 47 H 1.09001 * 109.52273 * 297.70499 * 25 24 23 48 48 H 1.08994 * 109.57973 * 177.54615 * 25 24 23 49 49 H 1.09008 * 109.40139 * 71.22162 * 26 5 4 50 50 H 1.08999 * 109.40696 * 191.05323 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1481 1.2876 0.0000 4 6 3.5949 1.1262 -0.4678 5 6 4.2493 -0.0014 0.3396 6 1 4.1093 0.1804 1.4051 7 6 5.7218 -0.0625 0.0245 8 8 6.2087 0.7300 -0.7538 9 7 6.4975 -0.9976 0.6076 10 6 7.9447 -0.9945 0.3804 11 6 8.5248 0.3596 0.7938 12 7 8.2266 0.6078 2.2066 13 6 8.7388 1.7140 2.8304 14 1 9.3628 2.4033 2.2810 15 6 8.4567 1.9488 4.1691 16 7 7.6966 1.1085 4.8387 17 14 9.1559 3.4575 5.0201 18 1 8.2067 4.5906 4.8779 19 1 9.3619 3.1622 6.4608 20 1 10.4551 3.8192 4.3983 21 6 8.2310 -1.2452 -1.1033 22 6 7.7153 -2.6346 -1.4870 23 8 8.3377 -3.6180 -0.6576 24 6 8.0663 -3.4618 0.7366 25 6 8.5960 -2.1057 1.2096 26 6 3.5839 -1.3240 -0.0492 27 6 2.0900 -1.1781 -0.0005 28 8 1.4160 -2.1854 0.0402 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5134 0.8902 31 1 -0.3633 0.5142 -0.8898 32 1 1.6271 1.9718 -0.6696 33 1 2.1431 1.6980 1.0098 34 1 4.1384 2.0566 -0.3035 35 1 3.6101 0.8733 -1.5279 36 1 6.0980 -1.6704 1.1811 37 1 9.6047 0.3527 0.6462 38 1 8.0799 1.1466 0.1849 39 1 7.6664 -0.0115 2.7000 40 1 7.4998 1.2724 5.7744 41 1 7.7248 -0.4900 -1.7046 42 1 9.3052 -1.1935 -1.2808 43 1 7.9544 -2.8356 -2.5312 44 1 6.6349 -2.6726 -1.3474 45 1 8.5582 -4.2588 1.2942 46 1 6.9904 -3.5107 0.9053 47 1 9.6776 -2.0713 1.0788 48 1 8.3519 -1.9652 2.2625 49 1 3.8880 -1.5992 -1.0591 50 1 3.8931 -2.1034 0.6472 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001673732787.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:20 Heat of formation + Delta-G solvation = -127.592253 kcal Electronic energy + Delta-G solvation = -31998.741761 eV Core-core repulsion = 27832.132255 eV Total energy + Delta-G solvation = -4166.609506 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.09185 -41.28338 -39.60649 -37.58195 -37.06095 -35.46639 -35.17098 -33.09790 -32.22842 -31.99947 -30.66826 -28.46534 -28.05762 -25.74446 -25.39451 -24.69962 -24.07356 -22.98742 -21.62112 -20.31267 -19.71983 -19.24236 -18.56733 -17.67761 -17.37097 -17.05516 -16.99624 -16.84224 -16.68524 -16.28685 -16.15256 -15.58864 -15.32872 -15.29116 -15.12496 -14.91690 -14.66835 -14.35117 -14.10594 -13.80042 -13.68772 -13.48028 -13.27323 -13.19474 -13.04574 -12.83189 -12.78626 -12.75143 -12.62024 -12.28940 -12.11020 -12.03654 -11.99358 -11.94649 -11.63998 -11.37968 -11.17411 -10.94817 -10.58795 -10.35160 -9.88434 -9.76363 -8.93537 -7.94876 -5.20696 1.46442 1.46677 1.51347 1.55145 1.69321 2.01376 2.19243 2.55547 2.97992 3.34704 3.40815 3.55822 3.58006 3.67980 3.72060 3.81022 3.90007 4.02800 4.18439 4.21072 4.26627 4.30381 4.34075 4.46502 4.48252 4.60144 4.63100 4.66861 4.70912 4.77586 4.80109 4.81735 4.87550 4.88703 4.97007 5.01665 5.08906 5.14341 5.17079 5.19464 5.24418 5.37535 5.48686 5.66534 6.26744 6.27626 6.35708 6.62222 7.04863 7.32939 7.36077 8.09329 8.38140 9.27763 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.008427 B = 0.004454 C = 0.003282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3321.772237 B = 6285.537949 C = 8530.512334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.605 5.605 3 C 0.116 3.884 4 C -0.110 4.110 5 C -0.105 4.105 6 H 0.104 0.896 7 C 0.528 3.472 8 O -0.558 6.558 9 N -0.707 5.707 10 C 0.181 3.819 11 C 0.145 3.855 12 N -0.728 5.728 13 C -0.243 4.243 14 H 0.063 0.937 15 C -0.065 4.065 16 N -0.962 5.962 17 Si 0.965 3.035 18 H -0.289 1.289 19 H -0.293 1.293 20 H -0.275 1.275 21 C -0.155 4.155 22 C 0.070 3.930 23 O -0.394 6.394 24 C 0.065 3.935 25 C -0.147 4.147 26 C -0.114 4.114 27 C 0.517 3.483 28 O -0.595 6.595 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.108 0.892 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.405 0.595 37 H 0.018 0.982 38 H 0.025 0.975 39 H 0.378 0.622 40 H 0.251 0.749 41 H 0.083 0.917 42 H 0.075 0.925 43 H 0.107 0.893 44 H 0.056 0.944 45 H 0.111 0.889 46 H 0.063 0.937 47 H 0.077 0.923 48 H 0.073 0.927 49 H 0.113 0.887 50 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.526 -5.882 -12.385 17.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.337 5.337 3 C -0.006 4.006 4 C -0.148 4.148 5 C -0.126 4.126 6 H 0.122 0.878 7 C 0.315 3.685 8 O -0.437 6.437 9 N -0.359 5.359 10 C 0.095 3.905 11 C 0.017 3.983 12 N -0.371 5.371 13 C -0.375 4.375 14 H 0.081 0.919 15 C -0.257 4.257 16 N -0.612 5.612 17 Si 0.794 3.206 18 H -0.216 1.216 19 H -0.220 1.220 20 H -0.201 1.201 21 C -0.194 4.194 22 C -0.006 4.006 23 O -0.312 6.312 24 C -0.011 4.011 25 C -0.185 4.185 26 C -0.154 4.154 27 C 0.306 3.694 28 O -0.477 6.477 29 H 0.091 0.909 30 H 0.094 0.906 31 H 0.100 0.900 32 H 0.126 0.874 33 H 0.094 0.906 34 H 0.104 0.896 35 H 0.098 0.902 36 H 0.242 0.758 37 H 0.036 0.964 38 H 0.043 0.957 39 H 0.211 0.789 40 H 0.060 0.940 41 H 0.101 0.899 42 H 0.094 0.906 43 H 0.125 0.875 44 H 0.074 0.926 45 H 0.129 0.871 46 H 0.081 0.919 47 H 0.096 0.904 48 H 0.092 0.908 49 H 0.131 0.869 50 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -10.268 -5.793 -12.976 17.531 hybrid contribution 0.135 0.926 1.479 1.750 sum -10.133 -4.867 -11.496 16.079 Atomic orbital electron populations 1.21901 0.78564 1.03984 1.03202 1.47361 1.08457 1.06266 1.71589 1.21586 0.92060 0.83779 1.03217 1.21649 0.94248 0.98754 1.00167 1.21417 0.90859 0.97195 1.03172 0.87811 1.20558 0.88786 0.79625 0.79535 1.90628 1.75614 1.41017 1.36429 1.45944 1.06876 1.32550 1.50505 1.20408 0.80074 0.94646 0.95399 1.21100 0.96336 0.95278 0.85584 1.42263 1.60589 1.27525 1.06761 1.19510 1.23624 1.01011 0.93317 0.91869 1.25347 1.01573 1.01502 0.97315 1.69763 1.43305 1.38932 1.09230 0.85273 0.78117 0.79652 0.77519 1.21642 1.21974 1.20073 1.22467 1.02609 0.99266 0.95091 1.22556 0.96643 0.86126 0.95294 1.87905 1.74048 1.51805 1.17489 1.22664 1.00468 0.96247 0.81763 1.22331 1.01496 0.94623 1.00099 1.21587 0.90044 0.97733 1.06039 1.20231 0.91066 0.82904 0.75159 1.90686 1.66928 1.37110 1.52966 0.90942 0.90617 0.89963 0.87429 0.90601 0.89581 0.90159 0.75843 0.96426 0.95749 0.78879 0.94032 0.89886 0.90639 0.87481 0.92616 0.87141 0.91869 0.90416 0.90835 0.86853 0.86781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.02 10.48 127.77 1.34 2.36 16 2 N -0.61 -11.50 3.21 -851.64 -2.73 -14.23 16 3 C 0.12 1.78 6.40 86.49 0.55 2.33 16 4 C -0.11 -2.17 4.71 30.68 0.14 -2.03 16 5 C -0.10 -2.35 2.61 -11.40 -0.03 -2.38 16 6 H 0.10 2.48 8.13 -2.39 -0.02 2.46 16 7 C 0.53 15.10 6.55 87.66 0.57 15.67 16 8 O -0.56 -19.48 12.15 -3.04 -0.04 -19.52 16 9 N -0.71 -19.13 3.74 -422.38 -1.58 -20.71 16 10 C 0.18 5.50 0.32 3.73 0.00 5.50 16 11 C 0.14 5.92 4.91 86.38 0.42 6.35 16 12 N -0.73 -35.54 5.15 -343.44 -1.77 -37.31 16 13 C -0.24 -13.46 9.99 84.03 0.84 -12.62 16 14 H 0.06 3.50 7.83 -2.91 -0.02 3.48 16 15 C -0.06 -3.62 5.50 84.86 0.47 -3.15 16 16 N -0.96 -56.20 13.06 21.65 0.28 -55.91 16 17 Si 0.96 45.70 29.55 68.60 2.03 47.73 16 18 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 19 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 20 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 21 C -0.16 -4.16 4.81 30.68 0.15 -4.01 16 22 C 0.07 1.55 6.68 72.01 0.48 2.03 16 23 O -0.39 -9.53 10.77 -148.98 -1.60 -11.14 16 24 C 0.07 1.43 6.67 72.01 0.48 1.91 16 25 C -0.15 -4.14 4.77 30.68 0.15 -3.99 16 26 C -0.11 -2.24 5.16 29.71 0.15 -2.09 16 27 C 0.52 12.20 7.47 87.71 0.66 12.85 16 28 O -0.59 -18.26 15.95 -3.01 -0.05 -18.31 16 29 H 0.07 1.44 6.59 -2.39 -0.02 1.43 16 30 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.11 1.13 8.10 -2.39 -0.02 1.11 16 33 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.09 1.98 7.89 -2.39 -0.02 1.96 16 35 H 0.08 1.55 8.12 -2.39 -0.02 1.53 16 36 H 0.41 9.32 7.01 -92.70 -0.65 8.67 16 37 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.02 1.12 6.15 -2.39 -0.01 1.11 16 39 H 0.38 18.83 6.53 -92.71 -0.61 18.22 16 40 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 41 H 0.08 2.45 6.21 -2.39 -0.01 2.44 16 42 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 43 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 44 H 0.06 1.14 7.75 -2.39 -0.02 1.12 16 45 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 46 H 0.06 1.19 7.04 -2.38 -0.02 1.18 16 47 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 48 H 0.07 2.36 7.16 -2.39 -0.02 2.34 16 49 H 0.11 2.03 8.09 -2.38 -0.02 2.01 16 50 H 0.11 2.03 7.84 -2.39 -0.02 2.01 16 Total: -1.00 -72.56 385.80 0.62 -71.94 By element: Atomic # 1 Polarization: 39.04 SS G_CDS: -0.30 Total: 38.74 kcal Atomic # 6 Polarization: 12.36 SS G_CDS: 6.38 Total: 18.74 kcal Atomic # 7 Polarization: -122.37 SS G_CDS: -5.80 Total: -128.17 kcal Atomic # 8 Polarization: -47.28 SS G_CDS: -1.69 Total: -48.97 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -72.56 0.62 -71.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673732787.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.656 kcal (2) G-P(sol) polarization free energy of solvation -72.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds