Wall clock time and date at job start Sat Apr 11 2020 05:48:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46763 * 124.34661 * 2 1 4 4 C 1.54484 * 105.47033 * 162.98455 * 3 2 1 5 5 C 1.54627 * 101.76511 * 25.41264 * 4 3 2 6 6 H 1.09002 * 110.48538 * 216.38800 * 5 4 3 7 7 C 1.53004 * 110.48804 * 93.88218 * 5 4 3 8 8 C 1.50691 * 109.47394 * 174.99824 * 7 5 4 9 9 O 1.21279 * 120.00107 * 359.97438 * 8 7 5 10 10 N 1.34785 * 119.99866 * 180.02562 * 8 7 5 11 11 C 1.46928 * 120.62931 * 179.97438 * 10 8 7 12 12 C 1.53184 * 108.77571 * 233.63016 * 11 10 8 13 13 C 1.53037 * 109.31174 * 305.36816 * 12 11 10 14 14 O 1.42899 * 109.45886 * 301.35344 * 13 12 11 15 15 C 1.53005 * 109.46129 * 181.38699 * 13 12 11 16 16 N 1.46496 * 109.47400 * 184.99517 * 15 13 12 17 17 C 1.36939 * 120.00077 * 179.97438 * 16 15 13 18 18 H 1.07997 * 119.99728 * 359.72656 * 17 16 15 19 19 C 1.38815 * 119.99845 * 180.02562 * 17 16 15 20 20 N 1.31619 * 119.99884 * 359.72042 * 19 17 16 21 21 Si 1.86798 * 119.99660 * 179.72678 * 19 17 16 22 22 H 1.48493 * 109.47326 * 89.99909 * 21 19 17 23 23 H 1.48506 * 109.46545 * 209.99659 * 21 19 17 24 24 H 1.48498 * 109.47210 * 329.99370 * 21 19 17 25 25 C 1.53034 * 109.54131 * 61.36592 * 13 12 11 26 26 C 1.46924 * 120.63125 * 0.02562 * 10 8 7 27 27 C 1.34422 * 124.34620 * 179.97438 * 2 1 3 28 28 O 1.21280 * 124.94559 * 0.45387 * 27 2 1 29 29 H 1.08998 * 109.47183 * 90.00367 * 1 2 3 30 30 H 1.09007 * 109.46907 * 209.99793 * 1 2 3 31 31 H 1.08994 * 109.46913 * 329.99971 * 1 2 3 32 32 H 1.08994 * 110.24567 * 43.98053 * 3 2 1 33 33 H 1.08995 * 110.24252 * 281.97760 * 3 2 1 34 34 H 1.08999 * 110.96973 * 267.29621 * 4 3 2 35 35 H 1.08998 * 111.00177 * 143.54334 * 4 3 2 36 36 H 1.09008 * 109.47093 * 54.99446 * 7 5 4 37 37 H 1.08997 * 109.46739 * 295.00328 * 7 5 4 38 38 H 1.09004 * 109.58203 * 113.84016 * 11 10 8 39 39 H 1.09002 * 109.58609 * 353.41913 * 11 10 8 40 40 H 1.09001 * 109.49943 * 185.41335 * 12 11 10 41 41 H 1.09004 * 109.52201 * 65.33253 * 12 11 10 42 42 H 0.96705 * 114.00087 * 180.02562 * 14 13 12 43 43 H 1.09007 * 109.47086 * 64.99419 * 15 13 12 44 44 H 1.09001 * 109.46760 * 304.99496 * 15 13 12 45 45 H 0.97004 * 120.00009 * 0.02562 * 16 15 13 46 46 H 0.97000 * 119.99517 * 180.02562 * 20 19 17 47 47 H 1.09001 * 109.49895 * 58.58671 * 25 13 12 48 48 H 1.09008 * 109.49963 * 178.68681 * 25 13 12 49 49 H 1.09000 * 109.58938 * 246.15678 * 26 10 8 50 50 H 1.09002 * 109.58447 * 6.58907 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2931 1.2117 0.0000 4 6 3.7010 0.7487 0.4357 5 6 3.6898 -0.7378 0.0102 6 1 4.2347 -1.3455 0.7326 7 6 4.2929 -0.8996 -1.3867 8 6 4.3837 -2.3645 -1.7281 9 8 4.0039 -3.1973 -0.9325 10 7 4.8879 -2.7493 -2.9174 11 6 4.9834 -4.1738 -3.2644 12 6 6.4258 -4.4855 -3.6754 13 6 6.8487 -3.5353 -4.7980 14 8 5.9636 -3.6878 -5.9095 15 6 8.2772 -3.8665 -5.2350 16 7 8.7255 -2.8836 -6.2245 17 6 9.9812 -2.9775 -6.7626 18 1 10.6427 -3.7735 -6.4542 19 6 10.4061 -2.0458 -7.6998 20 7 9.6000 -1.0755 -8.0754 21 14 12.1218 -2.1695 -8.4281 22 1 12.0813 -3.0118 -9.6503 23 1 12.6096 -0.8114 -8.7789 24 1 13.0385 -2.7833 -7.4341 25 6 6.7913 -2.0911 -4.2951 26 6 5.3536 -1.7522 -3.8909 27 6 2.2235 -1.1098 0.0005 28 8 1.7946 -2.2443 -0.0069 29 1 -0.3633 -0.0001 -1.0276 30 1 -0.3633 -0.8901 0.5138 31 1 -0.3633 0.8899 0.5138 32 1 1.8983 1.9383 0.7101 33 1 2.3306 1.6428 -1.0004 34 1 3.8269 0.8448 1.5141 35 1 4.4758 1.3008 -0.0962 36 1 5.2901 -0.4597 -1.4051 37 1 3.6597 -0.3949 -2.1164 38 1 4.3113 -4.3935 -4.0940 39 1 4.7106 -4.7795 -2.4002 40 1 6.4894 -5.5153 -4.0270 41 1 7.0857 -4.3524 -2.8181 42 1 6.1725 -3.1150 -6.6601 43 1 8.3004 -4.8629 -5.6763 44 1 8.9381 -3.8372 -4.3687 45 1 8.1330 -2.1659 -6.4981 46 1 9.8969 -0.4247 -8.7306 47 1 7.4474 -1.9801 -3.4318 48 1 7.1150 -1.4166 -5.0879 49 1 4.7119 -1.7741 -4.7718 50 1 5.3252 -0.7603 -3.4400 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674080438.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:24 Heat of formation + Delta-G solvation = -100.213747 kcal Electronic energy + Delta-G solvation = -30768.574293 eV Core-core repulsion = 26603.152008 eV Total energy + Delta-G solvation = -4165.422285 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.00835 -39.96886 -38.33877 -36.54671 -35.43393 -34.06419 -34.01754 -32.03356 -31.31491 -30.30502 -29.77070 -27.24513 -26.82464 -25.70073 -23.74848 -23.28704 -22.07419 -21.54479 -20.27886 -19.63520 -18.84079 -17.55497 -17.32620 -16.67996 -16.54645 -16.09431 -15.78209 -15.42641 -15.12193 -14.93990 -14.42143 -14.16152 -14.12973 -14.07436 -13.66534 -13.45579 -13.34981 -13.19274 -12.92043 -12.80990 -12.70054 -12.57194 -12.48715 -12.21688 -12.17545 -11.88590 -11.56780 -11.49157 -11.22058 -11.07031 -11.02173 -10.98089 -10.85724 -10.30519 -10.14925 -9.81972 -9.69490 -9.57637 -9.39169 -8.97356 -8.96193 -8.44424 -7.03731 -5.86851 -3.15558 2.48593 2.73021 2.77593 3.04862 3.38502 3.44331 3.45234 4.00931 4.09024 4.35518 4.47516 4.51041 4.56608 4.71186 4.80258 4.87924 4.92277 5.04158 5.07230 5.09572 5.15921 5.16309 5.23709 5.26896 5.39743 5.44492 5.46615 5.49160 5.49620 5.61185 5.68174 5.72471 5.87129 5.90654 6.02472 6.05422 6.15523 6.26708 6.35909 6.39916 6.62674 6.69218 6.72051 6.87579 7.51183 7.62882 8.08258 8.10222 8.29806 8.32350 9.43322 9.97019 10.31457 11.36014 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020440 B = 0.002344 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.546775 B =11942.899742 C =12668.316495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.634 5.634 3 C 0.103 3.897 4 C -0.131 4.131 5 C -0.107 4.107 6 H 0.114 0.886 7 C -0.124 4.124 8 C 0.504 3.496 9 O -0.519 6.519 10 N -0.610 5.610 11 C 0.120 3.880 12 C -0.116 4.116 13 C 0.130 3.870 14 O -0.561 6.561 15 C 0.128 3.872 16 N -0.730 5.730 17 C -0.240 4.240 18 H 0.070 0.930 19 C -0.012 4.012 20 N -0.935 5.935 21 Si 0.908 3.092 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.282 1.282 25 C -0.157 4.157 26 C 0.112 3.888 27 C 0.517 3.483 28 O -0.497 6.497 29 H 0.054 0.946 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.086 0.914 35 H 0.095 0.905 36 H 0.107 0.893 37 H 0.093 0.907 38 H 0.073 0.927 39 H 0.088 0.912 40 H 0.080 0.920 41 H 0.076 0.924 42 H 0.382 0.618 43 H 0.029 0.971 44 H 0.026 0.974 45 H 0.381 0.619 46 H 0.256 0.744 47 H 0.073 0.927 48 H 0.092 0.908 49 H 0.074 0.926 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.346 7.377 16.233 23.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.371 5.371 3 C -0.021 4.021 4 C -0.169 4.169 5 C -0.129 4.129 6 H 0.132 0.868 7 C -0.164 4.164 8 C 0.291 3.709 9 O -0.394 6.394 10 N -0.344 5.344 11 C -0.002 4.002 12 C -0.155 4.155 13 C 0.089 3.911 14 O -0.368 6.368 15 C 0.000 4.000 16 N -0.376 5.376 17 C -0.371 4.371 18 H 0.088 0.912 19 C -0.208 4.208 20 N -0.583 5.583 21 Si 0.739 3.261 22 H -0.217 1.217 23 H -0.217 1.217 24 H -0.208 1.208 25 C -0.195 4.195 26 C -0.011 4.011 27 C 0.303 3.697 28 O -0.370 6.370 29 H 0.072 0.928 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.096 0.904 33 H 0.089 0.911 34 H 0.104 0.896 35 H 0.113 0.887 36 H 0.125 0.875 37 H 0.111 0.889 38 H 0.091 0.909 39 H 0.106 0.894 40 H 0.099 0.901 41 H 0.095 0.905 42 H 0.231 0.769 43 H 0.047 0.953 44 H 0.043 0.957 45 H 0.215 0.785 46 H 0.066 0.934 47 H 0.092 0.908 48 H 0.110 0.890 49 H 0.092 0.908 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -15.990 5.800 17.027 24.067 hybrid contribution 1.183 0.886 -1.139 1.866 sum -14.806 6.686 15.888 22.724 Atomic orbital electron populations 1.21495 0.78288 1.02877 1.01766 1.48238 1.06343 1.07433 1.75052 1.22078 0.90744 0.87388 1.01842 1.22718 0.96753 0.94627 1.02777 1.21734 0.94951 0.97676 0.98589 0.86829 1.21578 1.03400 0.95137 0.96334 1.20485 0.77816 0.91113 0.81460 1.90790 1.46892 1.53680 1.48079 1.48113 1.62317 1.07643 1.16335 1.21472 0.96717 0.80996 1.01024 1.21846 0.96620 0.99918 0.97095 1.21284 0.89921 0.93413 0.86451 1.86385 1.55651 1.67615 1.27152 1.21335 0.91790 0.93875 0.93010 1.42334 1.15851 1.31408 1.48001 1.19213 0.90851 1.09403 1.17605 0.91157 1.24724 0.98412 0.97738 0.99956 1.69630 1.35779 1.17125 1.35811 0.86170 0.83994 0.76764 0.79141 1.21660 1.21741 1.20770 1.22527 0.95710 0.98429 1.02876 1.21717 0.95884 0.91024 0.92460 1.20748 0.88757 0.84386 0.75802 1.90786 1.77949 1.20729 1.47494 0.92786 0.90820 0.91231 0.90419 0.91083 0.89571 0.88669 0.87500 0.88859 0.90905 0.89405 0.90103 0.90513 0.76944 0.95296 0.95658 0.78456 0.93437 0.90807 0.89007 0.90815 0.90264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.72 10.96 59.85 0.66 1.37 16 2 N -0.63 -5.73 3.33 -180.29 -0.60 -6.33 16 3 C 0.10 0.55 7.35 -3.12 -0.02 0.53 16 4 C -0.13 -0.69 6.71 -25.10 -0.17 -0.86 16 5 C -0.11 -1.02 2.54 -90.63 -0.23 -1.25 16 6 H 0.11 1.22 7.90 -51.93 -0.41 0.81 16 7 C -0.12 -1.18 3.46 -27.88 -0.10 -1.27 16 8 C 0.50 7.04 7.50 -10.99 -0.08 6.96 16 9 O -0.52 -9.28 13.40 -14.99 -0.20 -9.48 16 10 N -0.61 -8.19 2.97 -172.80 -0.51 -8.70 16 11 C 0.12 1.71 6.19 -3.71 -0.02 1.68 16 12 C -0.12 -1.64 5.11 -26.62 -0.14 -1.78 16 13 C 0.13 2.04 0.71 -90.58 -0.06 1.98 16 14 O -0.56 -9.13 11.70 -35.23 -0.41 -9.55 16 15 C 0.13 2.47 5.43 -4.04 -0.02 2.45 16 16 N -0.73 -17.14 5.07 -59.91 -0.30 -17.44 16 17 C -0.24 -6.45 9.99 -15.06 -0.15 -6.60 16 18 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 19 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 20 N -0.93 -26.77 13.06 55.49 0.72 -26.05 16 21 Si 0.91 21.80 29.55 -169.99 -5.02 16.78 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 C -0.16 -2.23 4.87 -26.64 -0.13 -2.36 16 26 C 0.11 1.33 6.10 -3.74 -0.02 1.31 16 27 C 0.52 6.53 7.03 -10.86 -0.08 6.45 16 28 O -0.50 -8.81 15.79 -15.00 -0.24 -9.05 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.64 7.93 -51.93 -0.41 0.22 16 31 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 33 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.09 0.32 7.87 -51.93 -0.41 -0.09 16 36 H 0.11 0.76 7.65 -51.92 -0.40 0.36 16 37 H 0.09 0.78 7.93 -51.93 -0.41 0.37 16 38 H 0.07 1.07 7.81 -51.93 -0.41 0.67 16 39 H 0.09 1.32 7.00 -51.93 -0.36 0.95 16 40 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.38 6.13 8.19 45.56 0.37 6.50 16 43 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 44 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.38 9.02 5.55 -40.82 -0.23 8.80 16 46 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 47 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 48 H 0.09 1.46 6.53 -51.92 -0.34 1.12 16 49 H 0.07 0.90 7.81 -51.93 -0.41 0.49 16 50 H 0.08 0.73 5.93 -51.93 -0.31 0.42 16 LS Contribution 391.31 15.07 5.90 5.90 Total: -1.00 -35.68 391.31 -8.82 -44.51 By element: Atomic # 1 Polarization: 18.71 SS G_CDS: -7.49 Total: 11.22 kcal Atomic # 6 Polarization: 8.85 SS G_CDS: -0.66 Total: 8.19 kcal Atomic # 7 Polarization: -57.83 SS G_CDS: -0.69 Total: -58.52 kcal Atomic # 8 Polarization: -27.22 SS G_CDS: -0.85 Total: -28.07 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -35.68 -8.82 -44.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674080438.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.708 kcal (2) G-P(sol) polarization free energy of solvation -35.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds