Wall clock time and date at job start Sat Apr 11 2020 05:48:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.45759 * 117.94472 * 2 1 4 4 C 1.52925 * 110.48544 * 160.92345 * 3 2 1 5 5 C 1.53344 * 108.67310 * 50.75408 * 4 3 2 6 6 H 1.08998 * 109.67751 * 52.20017 * 5 4 3 7 7 C 1.50703 * 109.67013 * 172.73250 * 5 4 3 8 8 O 1.21278 * 120.00240 * 0.02562 * 7 5 4 9 9 N 1.34774 * 119.99795 * 179.97438 * 7 5 4 10 10 C 1.46504 * 120.00288 * 174.89666 * 9 7 5 11 11 C 1.53007 * 109.45650 * 302.69007 * 10 9 7 12 12 O 1.42901 * 109.46670 * 300.72946 * 11 10 9 13 13 C 1.53034 * 109.46241 * 182.71687 * 10 9 7 14 14 C 1.53169 * 109.32574 * 301.35220 * 13 10 9 15 15 N 1.46921 * 108.77038 * 305.36031 * 14 13 10 16 16 C 1.36933 * 120.63024 * 233.58768 * 15 14 13 17 17 H 1.08007 * 120.00330 * 31.73309 * 16 15 14 18 18 C 1.38811 * 120.00316 * 211.73499 * 16 15 14 19 19 N 1.31624 * 119.99515 * 11.04573 * 18 16 15 20 20 Si 1.86801 * 120.00442 * 191.04929 * 18 16 15 21 21 H 1.48502 * 109.46941 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47182 * 119.99800 * 20 18 16 23 23 H 1.48501 * 109.46939 * 240.00217 * 20 18 16 24 24 C 1.46926 * 118.74208 * 53.60501 * 15 14 13 25 25 C 1.53038 * 109.46141 * 62.65465 * 10 9 7 26 26 C 1.53068 * 108.42311 * 292.46450 * 5 4 3 27 27 C 1.33347 * 117.94956 * 179.73285 * 2 1 3 28 28 O 1.21285 * 118.24483 * 2.22832 * 27 2 1 29 29 H 1.08997 * 109.47000 * 89.99998 * 1 2 3 30 30 H 1.09001 * 109.47136 * 330.00109 * 1 2 3 31 31 H 1.09005 * 109.46600 * 210.00184 * 1 2 3 32 32 H 1.08998 * 109.29746 * 281.23225 * 3 2 1 33 33 H 1.08995 * 109.29850 * 40.81757 * 3 2 1 34 34 H 1.09005 * 109.60052 * 170.50700 * 4 3 2 35 35 H 1.08994 * 109.60421 * 290.99068 * 4 3 2 36 36 H 0.97001 * 120.00691 * 354.89719 * 9 7 5 37 37 H 1.08994 * 109.47211 * 60.72367 * 11 10 9 38 38 H 1.09000 * 109.46791 * 180.73324 * 11 10 9 39 39 H 0.96703 * 114.00121 * 180.02562 * 12 11 10 40 40 H 1.08997 * 109.49907 * 61.29617 * 13 10 9 41 41 H 1.09004 * 109.49393 * 181.39053 * 13 10 9 42 42 H 1.08997 * 109.58486 * 185.56905 * 14 13 10 43 43 H 1.08997 * 109.70490 * 65.21560 * 14 13 10 44 44 H 0.97005 * 119.99416 * 180.02562 * 19 18 16 45 45 H 1.08993 * 109.58841 * 186.60739 * 24 15 14 46 46 H 1.08999 * 109.70218 * 66.24782 * 24 15 14 47 47 H 1.08996 * 109.49894 * 178.61217 * 25 10 9 48 48 H 1.08997 * 109.50186 * 298.71233 * 25 10 9 49 49 H 1.09004 * 109.39678 * 169.03109 * 26 5 4 50 50 H 1.09001 * 109.40343 * 288.85762 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1481 1.2876 0.0000 4 6 3.5949 1.1260 0.4682 5 6 4.2493 -0.0012 -0.3396 6 1 4.1087 0.1814 -1.4050 7 6 5.7217 -0.0623 -0.0245 8 8 6.2050 0.7175 0.7687 9 7 6.5013 -0.9842 -0.6235 10 6 7.9497 -0.9731 -0.4038 11 6 8.5170 0.3873 -0.8144 12 8 8.2282 0.6273 -2.1932 13 6 8.6016 -2.0724 -1.2455 14 6 8.0066 -3.4290 -0.8561 15 7 8.1551 -3.6116 0.5941 16 6 8.7586 -4.7328 1.0980 17 1 9.5467 -5.2184 0.5414 18 6 8.3576 -5.2455 2.3240 19 7 7.2633 -4.7942 2.8997 20 14 9.3708 -6.5756 3.1568 21 1 10.5445 -6.9071 2.3097 22 1 9.8365 -6.0877 4.4798 23 1 8.5364 -7.7899 3.3427 24 6 7.6435 -2.5686 1.4936 25 6 8.2427 -1.2214 1.0776 26 6 3.5839 -1.3239 0.0487 27 6 2.0900 -1.1779 0.0055 28 8 1.4159 -2.1855 -0.0314 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 0.8900 0.5138 31 1 -0.3633 -0.8900 0.5139 32 1 2.1398 1.6998 -1.0090 33 1 1.6291 1.9707 0.6724 34 1 4.1384 2.0565 0.3042 35 1 3.6101 0.8728 1.5282 36 1 6.1035 -1.6552 -1.2001 37 1 8.0620 1.1692 -0.2065 38 1 9.5965 0.3914 -0.6633 39 1 8.5595 1.4738 -2.5230 40 1 8.4124 -1.8822 -2.3020 41 1 9.6763 -2.0807 -1.0637 42 1 8.5360 -4.2243 -1.3808 43 1 6.9498 -3.4567 -1.1215 44 1 6.9832 -5.1523 3.7567 45 1 7.9334 -2.7962 2.5193 46 1 6.5568 -2.5227 1.4226 47 1 9.3207 -1.2378 1.2375 48 1 7.7979 -0.4255 1.6749 49 1 3.8944 -2.1034 -0.6472 50 1 3.8869 -1.5988 1.0590 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674315367.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:29 Heat of formation + Delta-G solvation = -122.063192 kcal Electronic energy + Delta-G solvation = -32128.243438 eV Core-core repulsion = 27961.873690 eV Total energy + Delta-G solvation = -4166.369748 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.99071 -41.12126 -39.12312 -37.47443 -37.28313 -35.59954 -35.15961 -33.57311 -32.07248 -31.47544 -30.63683 -28.50786 -28.15549 -25.72692 -25.61802 -24.26269 -23.88350 -22.55554 -21.45816 -20.15235 -19.71141 -18.88019 -18.44495 -17.95626 -17.56617 -17.35271 -16.90302 -16.75234 -16.35789 -16.13672 -15.78110 -15.39070 -15.29841 -15.18892 -14.97411 -14.73933 -14.49500 -14.37462 -14.15204 -13.80773 -13.59134 -13.33225 -13.30002 -13.17467 -13.00225 -12.81794 -12.64501 -12.59055 -12.42921 -12.19354 -12.03581 -12.00947 -11.96793 -11.83579 -11.43821 -11.38100 -11.13492 -10.86801 -10.56200 -10.24747 -9.87344 -9.76731 -8.60479 -7.86441 -5.37348 1.44673 1.46306 1.49617 1.56483 1.70509 2.00859 2.25784 2.50174 3.27888 3.34333 3.40771 3.59372 3.65516 3.70716 3.73491 3.90399 4.05104 4.20505 4.21993 4.31093 4.36566 4.45453 4.50752 4.57507 4.59188 4.64211 4.64727 4.72886 4.74899 4.79142 4.83964 4.95444 4.99369 5.00452 5.05061 5.18357 5.19101 5.24352 5.33460 5.41025 5.48552 5.64332 5.68866 5.78312 6.35302 6.41350 6.68517 6.94702 7.04981 7.16558 7.34678 7.86693 8.39188 9.18875 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010835 B = 0.003996 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2583.674969 B = 7005.527338 C = 8769.715587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.604 5.604 3 C 0.115 3.885 4 C -0.112 4.112 5 C -0.097 4.097 6 H 0.129 0.871 7 C 0.523 3.477 8 O -0.566 6.566 9 N -0.699 5.699 10 C 0.193 3.807 11 C 0.077 3.923 12 O -0.573 6.573 13 C -0.117 4.117 14 C 0.141 3.859 15 N -0.607 5.607 16 C -0.261 4.261 17 H 0.067 0.933 18 C -0.048 4.048 19 N -0.935 5.935 20 Si 0.965 3.035 21 H -0.264 1.264 22 H -0.292 1.292 23 H -0.294 1.294 24 C 0.197 3.803 25 C -0.138 4.138 26 C -0.120 4.120 27 C 0.517 3.483 28 O -0.599 6.599 29 H 0.066 0.934 30 H 0.103 0.897 31 H 0.053 0.947 32 H 0.096 0.904 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.060 0.940 36 H 0.403 0.597 37 H 0.056 0.944 38 H 0.057 0.943 39 H 0.392 0.608 40 H 0.089 0.911 41 H 0.069 0.931 42 H 0.057 0.943 43 H 0.019 0.981 44 H 0.247 0.753 45 H 0.042 0.958 46 H -0.004 1.004 47 H 0.057 0.943 48 H 0.066 0.934 49 H 0.103 0.897 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.978 18.475 -11.101 22.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.336 5.336 3 C -0.007 4.007 4 C -0.150 4.150 5 C -0.119 4.119 6 H 0.147 0.853 7 C 0.310 3.690 8 O -0.446 6.446 9 N -0.349 5.349 10 C 0.107 3.893 11 C -0.002 4.002 12 O -0.380 6.380 13 C -0.156 4.156 14 C 0.015 3.985 15 N -0.331 5.331 16 C -0.392 4.392 17 H 0.085 0.915 18 C -0.243 4.243 19 N -0.581 5.581 20 Si 0.794 3.206 21 H -0.188 1.188 22 H -0.219 1.219 23 H -0.221 1.221 24 C 0.071 3.929 25 C -0.178 4.178 26 C -0.160 4.160 27 C 0.306 3.694 28 O -0.481 6.481 29 H 0.084 0.916 30 H 0.122 0.878 31 H 0.072 0.928 32 H 0.114 0.886 33 H 0.125 0.875 34 H 0.125 0.875 35 H 0.079 0.921 36 H 0.239 0.761 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.241 0.759 40 H 0.107 0.893 41 H 0.088 0.912 42 H 0.075 0.925 43 H 0.037 0.963 44 H 0.056 0.944 45 H 0.061 0.939 46 H 0.014 0.986 47 H 0.076 0.924 48 H 0.085 0.915 49 H 0.121 0.879 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -7.279 17.899 -10.401 21.944 hybrid contribution 0.550 -1.045 0.825 1.440 sum -6.729 16.854 -9.577 20.520 Atomic orbital electron populations 1.21859 0.78388 1.03705 1.02873 1.47404 1.08427 1.06225 1.71501 1.21747 0.91700 0.83158 1.04056 1.21709 0.94790 0.99034 0.99445 1.21432 0.90394 0.95812 1.04215 0.85280 1.20658 0.88886 0.79937 0.79537 1.90599 1.75892 1.42980 1.35132 1.45929 1.07084 1.32448 1.49423 1.20188 0.80193 0.94615 0.94316 1.22410 0.98607 0.96220 0.82938 1.86403 1.82640 1.44044 1.24934 1.22059 1.00144 0.93896 0.99526 1.21060 0.97161 0.95711 0.84559 1.44239 1.68864 1.19058 1.00899 1.19538 1.12220 1.03778 1.03618 0.91544 1.25893 0.97137 1.00539 1.00778 1.70165 1.24009 1.46145 1.17774 0.85238 0.78464 0.78773 0.78174 1.18788 1.21933 1.22079 1.20287 0.93461 0.85166 0.94011 1.22351 1.00646 0.98926 0.95908 1.21527 0.90850 0.98974 1.04678 1.20107 0.90641 0.83148 0.75477 1.90708 1.67048 1.37658 1.52683 0.91566 0.87832 0.92773 0.88611 0.87486 0.87495 0.92102 0.76131 0.92617 0.92513 0.75853 0.89251 0.91211 0.92496 0.96300 0.94366 0.93915 0.98622 0.92395 0.91533 0.87911 0.89840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.19 10.23 127.77 1.31 2.49 16 2 N -0.60 -11.85 3.21 -851.62 -2.73 -14.58 16 3 C 0.11 1.39 6.39 86.49 0.55 1.94 16 4 C -0.11 -1.95 4.70 30.68 0.14 -1.80 16 5 C -0.10 -2.07 2.61 -11.40 -0.03 -2.10 16 6 H 0.13 2.07 8.13 -2.39 -0.02 2.06 16 7 C 0.52 14.85 6.53 87.66 0.57 15.42 16 8 O -0.57 -18.91 12.16 -3.02 -0.04 -18.94 16 9 N -0.70 -20.48 3.91 -422.80 -1.66 -22.13 16 10 C 0.19 6.10 0.44 3.63 0.00 6.10 16 11 C 0.08 2.02 5.68 71.98 0.41 2.43 16 12 O -0.57 -12.47 12.84 -148.98 -1.91 -14.39 16 13 C -0.12 -3.69 4.84 30.66 0.15 -3.54 16 14 C 0.14 5.51 6.24 86.36 0.54 6.05 16 15 N -0.61 -29.99 2.98 -699.16 -2.09 -32.07 16 16 C -0.26 -14.34 9.57 84.03 0.80 -13.53 16 17 H 0.07 3.54 7.85 -2.91 -0.02 3.52 16 18 C -0.05 -2.71 5.04 84.86 0.43 -2.29 16 19 N -0.93 -56.50 11.10 21.65 0.24 -56.26 16 20 Si 0.97 45.59 29.57 68.60 2.03 47.62 16 21 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 22 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 23 H -0.29 -13.96 7.11 99.48 0.71 -13.26 16 24 C 0.20 9.64 4.99 86.36 0.43 10.07 16 25 C -0.14 -5.44 4.71 30.67 0.14 -5.29 16 26 C -0.12 -3.23 5.18 29.70 0.15 -3.08 16 27 C 0.52 14.59 7.47 87.71 0.65 15.24 16 28 O -0.60 -22.35 16.21 -3.05 -0.05 -22.40 16 29 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.10 0.93 7.86 -2.39 -0.02 0.91 16 31 H 0.05 1.17 7.20 -2.38 -0.02 1.15 16 32 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.11 0.80 7.92 -2.39 -0.02 0.78 16 34 H 0.11 1.67 7.90 -2.38 -0.02 1.65 16 35 H 0.06 1.33 8.12 -2.39 -0.02 1.31 16 36 H 0.40 11.15 6.81 -92.71 -0.63 10.52 16 37 H 0.06 1.59 6.17 -2.39 -0.01 1.58 16 38 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.39 4.92 9.12 -74.06 -0.68 4.24 16 40 H 0.09 2.44 7.66 -2.39 -0.02 2.42 16 41 H 0.07 2.25 8.14 -2.38 -0.02 2.23 16 42 H 0.06 2.20 7.93 -2.39 -0.02 2.19 16 43 H 0.02 0.73 6.90 -2.39 -0.02 0.72 16 44 H 0.25 14.59 8.31 -92.70 -0.77 13.82 16 45 H 0.04 2.44 6.15 -2.39 -0.01 2.43 16 46 H 0.00 -0.23 7.74 -2.39 -0.02 -0.24 16 47 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 48 H 0.07 2.70 6.23 -2.39 -0.01 2.69 16 49 H 0.10 2.80 7.87 -2.38 -0.02 2.78 16 50 H 0.08 2.71 8.10 -2.39 -0.02 2.69 16 Total: -1.00 -77.46 382.60 -0.29 -77.75 By element: Atomic # 1 Polarization: 27.63 SS G_CDS: -0.34 Total: 27.29 kcal Atomic # 6 Polarization: 21.86 SS G_CDS: 6.26 Total: 28.12 kcal Atomic # 7 Polarization: -118.81 SS G_CDS: -6.23 Total: -125.05 kcal Atomic # 8 Polarization: -53.73 SS G_CDS: -2.00 Total: -55.73 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Total: -77.46 -0.29 -77.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674315367.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.312 kcal (2) G-P(sol) polarization free energy of solvation -77.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds