Wall clock time and date at job start Sat Apr 11 2020 05:48:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42902 * 113.99830 * 2 1 4 4 C 1.52998 * 109.47286 * 180.02562 * 3 2 1 5 5 C 1.50703 * 115.54931 * 294.87872 * 4 3 2 6 6 O 1.21277 * 119.99989 * 124.27977 * 5 4 3 7 7 N 1.34776 * 120.00125 * 304.27533 * 5 4 3 8 8 C 1.46488 * 120.00270 * 174.98628 * 7 5 4 9 9 C 1.53785 * 113.61511 * 205.00226 * 8 7 5 10 10 C 1.53786 * 87.08260 * 220.01847 * 9 8 7 11 11 C 1.52997 * 113.61188 * 139.98023 * 10 9 8 12 12 N 1.46902 * 109.46979 * 175.00050 * 11 10 9 13 13 C 1.46898 * 111.00400 * 180.02562 * 12 11 10 14 14 C 1.50699 * 109.47135 * 180.02562 * 13 12 11 15 15 O 1.21293 * 120.00170 * 359.97438 * 14 13 12 16 16 N 1.34777 * 119.99458 * 179.97438 * 14 13 12 17 17 C 1.37102 * 119.99859 * 180.02562 * 16 14 13 18 18 H 1.08003 * 119.99612 * 359.97438 * 17 16 14 19 19 C 1.38945 * 120.00333 * 180.02562 * 17 16 14 20 20 N 1.31419 * 119.99780 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00240 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46516 * 89.99916 * 21 19 17 23 23 H 1.48497 * 109.47217 * 209.99788 * 21 19 17 24 24 H 1.48493 * 109.46897 * 330.00153 * 21 19 17 25 25 C 1.53781 * 87.07992 * 25.43096 * 10 9 8 26 26 C 1.53001 * 117.50080 * 80.54184 * 4 3 2 27 27 C 1.53003 * 117.50322 * 149.20390 * 4 3 2 28 28 H 1.09005 * 109.47162 * 59.99908 * 1 2 3 29 29 H 1.08997 * 109.46705 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47025 * 300.00016 * 1 2 3 31 31 H 1.08993 * 109.47445 * 60.00222 * 3 2 1 32 32 H 1.09005 * 109.47388 * 299.99923 * 3 2 1 33 33 H 0.97007 * 119.99310 * 354.99035 * 7 5 4 34 34 H 1.09003 * 112.91082 * 336.24912 * 8 7 5 35 35 H 1.09005 * 113.61266 * 105.46833 * 9 8 7 36 36 H 1.08997 * 113.68960 * 334.58261 * 9 8 7 37 37 H 1.09003 * 113.61060 * 270.80171 * 10 9 8 38 38 H 1.08993 * 109.47396 * 294.99874 * 11 10 9 39 39 H 1.08999 * 109.46926 * 55.00196 * 11 10 9 40 40 H 1.00902 * 110.99782 * 56.04401 * 12 11 10 41 41 H 1.09001 * 109.46897 * 300.00261 * 13 12 11 42 42 H 1.08992 * 109.46919 * 59.99641 * 13 12 11 43 43 H 0.96996 * 120.00192 * 359.97438 * 16 14 13 44 44 H 0.96996 * 119.99631 * 180.02562 * 20 19 17 45 45 H 1.09000 * 113.61201 * 89.11154 * 25 10 9 46 46 H 1.08995 * 113.61599 * 220.01846 * 25 10 9 47 47 H 1.09000 * 117.50412 * 215.00615 * 26 4 3 48 48 H 1.09007 * 117.49827 * 0.02849 * 26 4 3 49 49 H 1.09003 * 117.49581 * 359.97438 * 27 4 3 50 50 H 1.09001 * 117.49806 * 144.97158 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 6 4.1387 0.5630 1.2325 6 8 4.8596 -0.4070 1.1318 7 7 3.8772 1.0851 2.4472 8 6 4.3726 0.4176 3.6534 9 6 3.5437 0.7245 4.9119 10 6 4.8763 0.7981 5.6760 11 6 4.9295 1.9263 6.7080 12 7 6.1863 1.8400 7.4636 13 6 6.2723 2.9098 8.4666 14 6 7.5722 2.7892 9.2195 15 8 8.3502 1.8993 8.9476 16 7 7.8701 3.6703 10.1949 17 6 9.0529 3.5610 10.8795 18 1 9.7456 2.7686 10.6375 19 6 9.3598 4.4690 11.8855 20 7 8.5166 5.4329 12.1804 21 14 10.9711 4.3196 12.8188 22 1 12.0194 5.1112 12.1262 23 1 10.7928 4.8354 14.1999 24 1 11.3818 2.8936 12.8721 25 6 5.5354 1.1589 4.3342 26 6 4.2215 0.9070 -1.3397 27 6 4.3314 2.2913 -0.6956 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.6886 1.8464 0.8899 32 1 1.6886 1.8465 -0.8900 33 1 3.3608 1.9028 2.5227 34 1 4.5609 -0.6455 3.5032 35 1 2.9052 -0.1011 5.2262 36 1 3.0136 1.6758 4.8659 37 1 5.2015 -0.1607 6.0798 38 1 4.8777 2.8881 6.1978 39 1 4.0867 1.8324 7.3928 40 1 6.9826 1.8597 6.8442 41 1 6.2296 3.8786 7.9689 42 1 5.4388 2.8223 9.1634 43 1 7.2480 4.3822 10.4120 44 1 8.7310 6.0669 12.8824 45 1 5.5504 2.2293 4.1291 46 1 6.5046 0.6841 4.1822 47 1 5.1093 0.2746 -1.3287 48 1 3.5863 0.8106 -2.2203 49 1 3.7685 3.1051 -1.1527 50 1 5.2913 2.5699 -0.2606 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674562888.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:36 Heat of formation + Delta-G solvation = -73.059105 kcal Electronic energy + Delta-G solvation = -28480.533485 eV Core-core repulsion = 24316.288713 eV Total energy + Delta-G solvation = -4164.244772 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.73600 -39.36751 -38.26021 -38.01233 -36.52492 -35.20277 -33.89315 -33.34551 -31.20313 -28.97417 -28.42211 -26.32079 -25.94887 -25.60965 -24.32957 -23.28167 -22.91458 -21.49306 -20.40557 -19.50360 -19.07943 -17.87023 -17.69378 -16.88345 -16.69621 -16.29180 -15.87186 -15.79955 -15.57022 -15.38788 -14.86821 -14.63241 -14.50011 -14.24250 -14.06361 -13.60705 -13.51227 -13.10007 -13.01568 -12.71079 -12.66227 -12.51999 -12.20067 -12.08799 -11.92211 -11.75667 -11.55930 -11.51749 -11.18854 -11.11609 -11.01164 -10.77654 -10.68087 -10.38184 -10.37446 -10.23471 -10.20136 -9.91725 -9.49516 -9.22981 -8.43930 -8.02744 -7.94049 -6.40478 -3.81194 2.25799 2.79155 2.91891 3.18980 3.27465 3.33892 3.54943 3.92787 4.08128 4.13057 4.21633 4.27278 4.34965 4.36709 4.49890 4.56488 4.67915 4.72823 4.78521 4.82451 4.89460 4.99208 5.10232 5.15248 5.20483 5.23384 5.26926 5.37056 5.43795 5.44868 5.47111 5.57998 5.66896 5.67768 5.72703 5.81556 5.88519 5.98632 6.01001 6.17532 6.28945 6.40908 6.60375 7.23299 7.26957 7.56602 7.71026 7.97799 8.08093 8.63017 9.19447 9.55969 10.07701 10.77329 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.025762 B = 0.001518 C = 0.001492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.615135 B =18438.607216 C =18768.231027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.105 3.895 4 C -0.169 4.169 5 C 0.558 3.442 6 O -0.531 6.531 7 N -0.715 5.715 8 C 0.124 3.876 9 C -0.138 4.138 10 C -0.103 4.103 11 C 0.072 3.928 12 N -0.669 5.669 13 C 0.051 3.949 14 C 0.441 3.559 15 O -0.582 6.582 16 N -0.565 5.565 17 C -0.299 4.299 18 H 0.103 0.897 19 C 0.022 3.978 20 N -0.903 5.903 21 Si 0.930 3.070 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.269 1.269 25 C -0.150 4.150 26 C -0.134 4.134 27 C -0.148 4.148 28 H 0.041 0.959 29 H 0.088 0.912 30 H 0.042 0.958 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.399 0.601 34 H 0.114 0.886 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.105 0.895 38 H 0.026 0.974 39 H 0.071 0.929 40 H 0.349 0.651 41 H 0.042 0.958 42 H 0.085 0.915 43 H 0.392 0.608 44 H 0.271 0.729 45 H 0.082 0.918 46 H 0.074 0.926 47 H 0.109 0.891 48 H 0.104 0.896 49 H 0.106 0.894 50 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.267 -2.879 -25.740 32.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.302 6.302 3 C 0.028 3.972 4 C -0.172 4.172 5 C 0.344 3.656 6 O -0.407 6.407 7 N -0.365 5.365 8 C 0.019 3.981 9 C -0.177 4.177 10 C -0.122 4.122 11 C -0.058 4.058 12 N -0.301 5.301 13 C -0.082 4.082 14 C 0.226 3.774 15 O -0.466 6.466 16 N -0.201 5.201 17 C -0.429 4.429 18 H 0.121 0.879 19 C -0.180 4.180 20 N -0.544 5.544 21 Si 0.757 3.243 22 H -0.204 1.204 23 H -0.209 1.209 24 H -0.194 1.194 25 C -0.189 4.189 26 C -0.171 4.171 27 C -0.185 4.185 28 H 0.060 0.940 29 H 0.106 0.894 30 H 0.061 0.939 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.233 0.767 34 H 0.132 0.868 35 H 0.094 0.906 36 H 0.103 0.897 37 H 0.124 0.876 38 H 0.044 0.956 39 H 0.090 0.910 40 H 0.169 0.831 41 H 0.060 0.940 42 H 0.103 0.897 43 H 0.225 0.775 44 H 0.081 0.919 45 H 0.100 0.900 46 H 0.093 0.907 47 H 0.127 0.873 48 H 0.123 0.877 49 H 0.125 0.875 50 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -18.342 -4.689 -25.388 31.670 hybrid contribution -0.048 1.971 0.257 1.988 sum -18.390 -2.718 -25.131 31.259 Atomic orbital electron populations 1.22773 0.80666 1.03133 0.99991 1.87983 1.19778 1.27066 1.95357 1.21872 0.89165 0.85338 1.00828 1.21402 0.93894 1.07316 0.94575 1.19300 0.79772 0.83090 0.83478 1.90705 1.36978 1.26685 1.86322 1.45908 1.56538 1.28576 1.05482 1.22550 0.95091 0.98409 0.82022 1.23366 0.97110 1.02433 0.94814 1.22387 0.95695 1.00678 0.93428 1.21908 0.93574 0.95579 0.94705 1.60063 1.04108 1.47798 1.18118 1.21668 0.98454 0.92663 0.95427 1.19836 0.88501 0.84969 0.84078 1.90525 1.51396 1.35786 1.68937 1.41865 1.19593 1.27302 1.31378 1.19717 0.96129 1.13359 1.13675 0.87917 1.25259 0.99413 0.95603 0.97685 1.69617 1.36320 1.16323 1.32154 0.85851 0.81259 0.78778 0.78368 1.20448 1.20933 1.19396 1.23569 0.98901 1.00887 0.95528 1.22992 1.02684 0.97999 0.93440 1.23123 1.01110 0.92391 1.01901 0.93992 0.89364 0.93908 0.92557 0.92188 0.76723 0.86763 0.90569 0.89723 0.87647 0.95605 0.91010 0.83137 0.94046 0.89652 0.77483 0.91914 0.89953 0.90675 0.87290 0.87722 0.87535 0.87633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.38 -3.33 10.63 -35.23 -0.37 -3.71 16 3 C 0.10 0.65 5.74 37.16 0.21 0.87 16 4 C -0.17 -1.31 2.18 -155.66 -0.34 -1.65 16 5 C 0.56 6.05 7.09 -10.98 -0.08 5.97 16 6 O -0.53 -8.04 16.12 5.56 0.09 -7.95 16 7 N -0.72 -6.09 5.32 -53.02 -0.28 -6.37 16 8 C 0.12 1.17 4.21 -67.12 -0.28 0.89 16 9 C -0.14 -1.10 7.39 -25.91 -0.19 -1.30 16 10 C -0.10 -1.05 3.90 -89.81 -0.35 -1.40 16 11 C 0.07 0.85 5.52 -3.82 -0.02 0.83 16 12 N -0.67 -10.88 6.13 -115.07 -0.70 -11.58 16 13 C 0.05 0.90 6.17 -4.98 -0.03 0.87 16 14 C 0.44 10.57 7.82 -10.99 -0.09 10.48 16 15 O -0.58 -16.11 15.78 5.55 0.09 -16.02 16 16 N -0.56 -14.47 5.29 -10.96 -0.06 -14.53 16 17 C -0.30 -8.45 9.68 -14.93 -0.14 -8.59 16 18 H 0.10 3.04 7.16 -52.48 -0.38 2.67 16 19 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 20 N -0.90 -24.67 13.05 55.50 0.72 -23.94 16 21 Si 0.93 21.21 29.55 -169.99 -5.02 16.19 16 22 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 23 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 24 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 25 C -0.15 -1.51 7.43 -25.92 -0.19 -1.70 16 26 C -0.13 -0.98 9.76 -26.69 -0.26 -1.24 16 27 C -0.15 -0.82 9.93 -26.69 -0.26 -1.09 16 28 H 0.04 0.16 8.14 -51.93 -0.42 -0.26 16 29 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.06 0.27 7.91 -51.93 -0.41 -0.14 16 32 H 0.06 0.26 8.09 -51.93 -0.42 -0.16 16 33 H 0.40 2.34 8.50 -40.82 -0.35 1.99 16 34 H 0.11 1.30 7.53 -51.93 -0.39 0.91 16 35 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.08 0.56 8.08 -51.93 -0.42 0.14 16 37 H 0.11 1.22 8.14 -51.93 -0.42 0.79 16 38 H 0.03 0.28 7.84 -51.93 -0.41 -0.12 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.35 5.95 8.43 -39.29 -0.33 5.61 16 41 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 43 H 0.39 9.56 7.90 -40.82 -0.32 9.24 16 44 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 45 H 0.08 0.79 7.90 -51.93 -0.41 0.38 16 46 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 47 H 0.11 0.97 7.83 -51.93 -0.41 0.56 16 48 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 49 H 0.11 0.36 8.14 -51.93 -0.42 -0.07 16 50 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 419.69 15.07 6.32 6.32 Total: -1.00 -35.19 419.69 -8.68 -43.87 By element: Atomic # 1 Polarization: 21.47 SS G_CDS: -8.45 Total: 13.02 kcal Atomic # 6 Polarization: 5.72 SS G_CDS: -1.01 Total: 4.71 kcal Atomic # 7 Polarization: -56.10 SS G_CDS: -0.32 Total: -56.42 kcal Atomic # 8 Polarization: -27.49 SS G_CDS: -0.20 Total: -27.69 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -35.19 -8.68 -43.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674562888.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.188 kcal (2) G-P(sol) polarization free energy of solvation -35.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds