Wall clock time and date at job start Sat Apr 11 2020 05:48:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46904 * 110.99957 * 2 1 4 4 C 1.50696 * 109.47158 * 66.04585 * 3 2 1 5 5 O 1.21297 * 120.00202 * 0.02562 * 4 3 2 6 6 N 1.34774 * 119.99927 * 179.97438 * 4 3 2 7 7 C 1.37104 * 119.99646 * 180.02562 * 6 4 3 8 8 H 1.07999 * 120.00535 * 0.02562 * 7 6 4 9 9 C 1.38951 * 119.99508 * 180.02562 * 7 6 4 10 10 N 1.31416 * 120.00428 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 119.99873 * 180.02562 * 9 7 6 12 12 H 1.48506 * 109.46909 * 0.02562 * 11 9 7 13 13 H 1.48504 * 109.47081 * 119.99593 * 11 9 7 14 14 H 1.48492 * 109.47437 * 239.99989 * 11 9 7 15 15 C 1.46899 * 110.99664 * 236.04936 * 2 1 3 16 16 C 1.53000 * 109.46717 * 293.94916 * 15 2 1 17 17 H 1.09002 * 109.47078 * 60.00948 * 16 15 2 18 18 O 1.42898 * 109.47691 * 300.00165 * 16 15 2 19 19 C 1.53007 * 109.46897 * 180.02562 * 16 15 2 20 20 N 1.46496 * 109.47108 * 185.00195 * 19 16 15 21 21 C 1.46495 * 120.00284 * 270.00123 * 20 19 16 22 22 C 1.34782 * 120.00081 * 90.00070 * 20 19 16 23 23 O 1.21614 * 119.99948 * 359.97438 * 22 20 19 24 24 C 1.47103 * 120.00086 * 180.02562 * 22 20 19 25 25 C 1.32994 * 119.99554 * 180.02562 * 24 22 20 26 26 C 1.51406 * 136.31075 * 179.97438 * 25 24 22 27 27 C 1.53674 * 87.40886 * 153.99456 * 26 25 24 28 28 C 1.51400 * 136.32012 * 359.97438 * 25 24 22 29 29 H 1.08998 * 109.47356 * 183.95481 * 1 2 3 30 30 H 1.09001 * 109.46734 * 303.95275 * 1 2 3 31 31 H 1.08995 * 109.47093 * 63.95053 * 1 2 3 32 32 H 1.09002 * 109.46931 * 186.04846 * 3 2 1 33 33 H 1.09003 * 109.47122 * 306.04475 * 3 2 1 34 34 H 0.96992 * 120.00182 * 0.02562 * 6 4 3 35 35 H 0.97001 * 119.99692 * 179.97438 * 10 9 7 36 36 H 1.09002 * 109.46572 * 173.95553 * 15 2 1 37 37 H 1.08994 * 109.47599 * 53.95267 * 15 2 1 38 38 H 0.96697 * 114.00260 * 300.00309 * 18 16 15 39 39 H 1.08996 * 109.47132 * 65.00287 * 19 16 15 40 40 H 1.09006 * 109.46968 * 305.00230 * 19 16 15 41 41 H 1.09000 * 109.47234 * 270.00212 * 21 20 19 42 42 H 1.08997 * 109.47295 * 29.99632 * 21 20 19 43 43 H 1.09004 * 109.47593 * 149.99901 * 21 20 19 44 44 H 1.07995 * 119.99864 * 359.97438 * 24 22 20 45 45 H 1.08998 * 113.56558 * 268.62451 * 26 25 24 46 46 H 1.08999 * 113.56083 * 39.36499 * 26 25 24 47 47 H 1.09002 * 113.82896 * 139.85040 * 27 26 25 48 48 H 1.09006 * 113.82514 * 271.42974 * 27 26 25 49 49 H 1.09003 * 113.56214 * 320.63874 * 28 25 24 50 50 H 1.08999 * 113.56416 * 91.37218 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6370 2.0472 1.2984 5 8 1.0055 1.4453 2.1412 6 7 2.0190 3.3199 1.5237 7 6 1.6932 3.9344 2.7052 8 1 1.1309 3.3985 3.4556 9 6 2.0865 5.2467 2.9372 10 7 2.7712 5.8987 2.0244 11 14 1.6434 6.0838 4.5472 12 1 0.8770 5.1407 5.4009 13 1 2.8856 6.4908 5.2519 14 1 0.8157 7.2850 4.2693 15 6 1.9954 -0.7659 -1.1376 16 6 1.6314 -2.2425 -0.9703 17 1 0.5471 -2.3474 -0.9323 18 8 2.2009 -2.7392 0.2426 19 6 2.1802 -3.0405 -2.1549 20 7 1.7310 -4.4314 -2.0569 21 6 2.5425 -5.4141 -1.3344 22 6 0.5711 -4.8071 -2.6313 23 8 -0.1029 -3.9913 -3.2307 24 6 0.1197 -6.2037 -2.5324 25 6 -1.0246 -6.5744 -3.0997 26 6 -1.8175 -7.8578 -3.2284 27 6 -3.0727 -6.9849 -3.3833 28 6 -2.1158 -5.9015 -3.9051 29 1 -0.3634 -1.0252 0.0709 30 1 -0.3633 0.5740 0.8525 31 1 -0.3633 0.4513 -0.9232 32 1 3.0798 1.3444 -0.1083 33 1 1.5612 1.9274 -0.8309 34 1 2.5243 3.8010 0.8499 35 1 3.0454 6.8149 2.1863 36 1 3.0797 -0.6610 -1.1756 37 1 1.5611 -0.3872 -2.0628 38 1 3.1652 -2.6772 0.2786 39 1 3.2696 -3.0087 -2.1409 40 1 1.8159 -2.6057 -3.0858 41 1 3.2462 -5.8812 -2.0234 42 1 3.0924 -4.9150 -0.5365 43 1 1.8928 -6.1772 -0.9057 44 1 0.7180 -6.9280 -1.9998 45 1 -1.5738 -8.4329 -4.1216 46 1 -1.8169 -8.4630 -2.3218 47 1 -3.7740 -7.3512 -4.1330 48 1 -3.5518 -6.7309 -2.4377 49 1 -2.3605 -4.8987 -3.5548 50 1 -1.9530 -5.9459 -4.9819 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001677150965.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:47 Heat of formation + Delta-G solvation = -60.602202 kcal Electronic energy + Delta-G solvation = -29316.668466 eV Core-core repulsion = 25152.963866 eV Total energy + Delta-G solvation = -4163.704600 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.34626 -39.01338 -38.54828 -37.59765 -35.80853 -35.01991 -33.77578 -31.71176 -31.20028 -30.28224 -27.94002 -27.25460 -26.32907 -26.10873 -24.87544 -23.65003 -22.55848 -20.98450 -20.13509 -19.08996 -18.13366 -17.79568 -17.52572 -16.83004 -16.25356 -16.02158 -15.79036 -15.67479 -15.40414 -15.10889 -14.67396 -14.49159 -14.37486 -13.87895 -13.73697 -13.59210 -13.26195 -13.21196 -12.87592 -12.83300 -12.71135 -12.33346 -12.07723 -12.04050 -11.90184 -11.59143 -11.46814 -11.36031 -11.31690 -11.21267 -10.92597 -10.88851 -10.78414 -10.32695 -10.31086 -10.18467 -9.82440 -9.54028 -9.44477 -8.73963 -8.35079 -7.92681 -7.76057 -6.38004 -3.78431 1.05996 2.71555 3.08310 3.18996 3.29202 3.36839 3.87675 3.95429 3.99344 4.10631 4.25432 4.35597 4.46386 4.60491 4.73295 4.78501 4.90054 4.93657 5.04700 5.12865 5.14627 5.20172 5.22173 5.27392 5.29658 5.32847 5.44278 5.45198 5.49415 5.61141 5.61614 5.77200 5.79629 5.82305 5.89035 5.99848 6.02844 6.06478 6.23444 6.31528 6.33704 6.65606 7.15396 7.34104 7.42751 7.59264 7.76573 8.00698 8.11251 8.66736 9.22712 9.59251 10.11755 10.79973 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023509 B = 0.001803 C = 0.001749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.724679 B =15527.433934 C =16002.588682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.506 5.506 3 C 0.045 3.955 4 C 0.445 3.555 5 O -0.574 6.574 6 N -0.567 5.567 7 C -0.296 4.296 8 H 0.103 0.897 9 C 0.021 3.979 10 N -0.903 5.903 11 Si 0.929 3.071 12 H -0.268 1.268 13 H -0.282 1.282 14 H -0.282 1.282 15 C 0.024 3.976 16 C 0.099 3.901 17 H 0.101 0.899 18 O -0.540 6.540 19 C 0.085 3.915 20 N -0.606 5.606 21 C 0.080 3.920 22 C 0.550 3.450 23 O -0.542 6.542 24 C -0.202 4.202 25 C -0.060 4.060 26 C -0.109 4.109 27 C -0.143 4.143 28 C -0.107 4.107 29 H 0.060 0.940 30 H 0.095 0.905 31 H 0.012 0.988 32 H 0.086 0.914 33 H 0.046 0.954 34 H 0.391 0.609 35 H 0.270 0.730 36 H 0.076 0.924 37 H 0.040 0.960 38 H 0.367 0.633 39 H 0.081 0.919 40 H 0.092 0.908 41 H 0.053 0.947 42 H 0.079 0.921 43 H 0.072 0.928 44 H 0.134 0.866 45 H 0.101 0.899 46 H 0.078 0.922 47 H 0.078 0.922 48 H 0.086 0.914 49 H 0.088 0.912 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.187 -26.238 -14.502 30.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.230 5.230 3 C -0.086 4.086 4 C 0.231 3.769 5 O -0.458 6.458 6 N -0.204 5.204 7 C -0.426 4.426 8 H 0.121 0.879 9 C -0.181 4.181 10 N -0.545 5.545 11 Si 0.756 3.244 12 H -0.192 1.192 13 H -0.208 1.208 14 H -0.208 1.208 15 C -0.106 4.106 16 C 0.038 3.962 17 H 0.119 0.881 18 O -0.343 6.343 19 C -0.038 4.038 20 N -0.338 5.338 21 C -0.063 4.063 22 C 0.341 3.659 23 O -0.421 6.421 24 C -0.223 4.223 25 C -0.062 4.062 26 C -0.146 4.146 27 C -0.180 4.180 28 C -0.144 4.144 29 H 0.079 0.921 30 H 0.114 0.886 31 H 0.031 0.969 32 H 0.104 0.896 33 H 0.064 0.936 34 H 0.224 0.776 35 H 0.080 0.920 36 H 0.094 0.906 37 H 0.058 0.942 38 H 0.213 0.787 39 H 0.099 0.901 40 H 0.110 0.890 41 H 0.071 0.929 42 H 0.098 0.902 43 H 0.091 0.909 44 H 0.152 0.848 45 H 0.119 0.881 46 H 0.097 0.903 47 H 0.096 0.904 48 H 0.104 0.896 49 H 0.106 0.894 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -2.357 -26.358 -13.654 29.778 hybrid contribution 0.706 1.332 -0.497 1.587 sum -1.651 -25.027 -14.151 28.798 Atomic orbital electron populations 1.22552 0.86744 1.01995 1.01223 1.61495 1.08687 1.12293 1.40489 1.21885 1.00513 0.89091 0.97130 1.19739 0.85349 0.82896 0.88934 1.90499 1.43673 1.64580 1.47026 1.41874 1.49636 1.10807 1.18059 1.19754 1.32719 0.95422 0.94699 0.87877 1.25253 0.96925 0.96658 0.99220 1.69625 1.38314 1.12149 1.34405 0.85806 0.78170 0.79005 0.81396 1.19231 1.20791 1.20827 1.22785 1.00511 0.94461 0.92824 1.22314 0.99384 0.90571 0.83898 0.88119 1.86674 1.24754 1.84796 1.38106 1.22185 0.99554 0.81647 1.00452 1.47535 1.22271 1.09761 1.54227 1.21863 0.95460 0.92446 0.96512 1.18464 0.80478 0.88465 0.78482 1.90775 1.54365 1.53949 1.42973 1.21659 0.97281 0.95714 1.07628 1.23519 0.91475 0.98509 0.92714 1.22360 0.94467 0.94770 1.02976 1.22789 0.95919 0.97147 1.02181 1.22292 0.92561 0.99871 0.99683 0.92140 0.88613 0.96928 0.89553 0.93630 0.77554 0.92006 0.90582 0.94222 0.78682 0.90055 0.89006 0.92889 0.90218 0.90906 0.84795 0.88117 0.90341 0.90360 0.89583 0.89390 0.88434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 8.96 60.07 0.54 0.95 16 2 N -0.51 -8.86 4.37 -244.37 -1.07 -9.93 16 3 C 0.05 0.84 5.45 -4.98 -0.03 0.81 16 4 C 0.45 10.81 7.47 -10.99 -0.08 10.73 16 5 O -0.57 -15.95 13.91 5.54 0.08 -15.87 16 6 N -0.57 -14.65 5.29 -10.96 -0.06 -14.71 16 7 C -0.30 -8.40 9.68 -14.93 -0.14 -8.55 16 8 H 0.10 3.07 7.16 -52.49 -0.38 2.70 16 9 C 0.02 0.56 5.50 -17.47 -0.10 0.46 16 10 N -0.90 -24.89 13.05 55.50 0.72 -24.16 16 11 Si 0.93 21.38 29.55 -169.99 -5.02 16.36 16 12 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 13 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 14 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 15 C 0.02 0.31 4.62 -3.82 -0.02 0.29 16 16 C 0.10 1.21 3.08 -26.73 -0.08 1.13 16 17 H 0.10 1.52 6.55 -51.93 -0.34 1.17 16 18 O -0.54 -6.88 12.03 -35.23 -0.42 -7.30 16 19 C 0.09 0.82 5.06 -4.04 -0.02 0.80 16 20 N -0.61 -5.90 2.84 -182.98 -0.52 -6.42 16 21 C 0.08 0.52 9.97 59.84 0.60 1.12 16 22 C 0.55 6.47 7.63 -12.66 -0.10 6.38 16 23 O -0.54 -8.11 14.72 5.27 0.08 -8.03 16 24 C -0.20 -1.84 9.21 -37.81 -0.35 -2.19 16 25 C -0.06 -0.52 6.92 -100.49 -0.70 -1.22 16 26 C -0.11 -0.63 7.95 -27.40 -0.22 -0.84 16 27 C -0.14 -0.90 8.18 -26.04 -0.21 -1.11 16 28 C -0.11 -0.92 7.01 -27.41 -0.19 -1.12 16 29 H 0.06 1.04 6.47 -51.93 -0.34 0.70 16 30 H 0.10 2.06 5.82 -51.93 -0.30 1.76 16 31 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 16 32 H 0.09 1.41 7.93 -51.93 -0.41 1.00 16 33 H 0.05 0.78 8.12 -51.93 -0.42 0.36 16 34 H 0.39 9.66 7.90 -40.82 -0.32 9.34 16 35 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 36 H 0.08 0.83 7.93 -51.93 -0.41 0.42 16 37 H 0.04 0.50 8.12 -51.93 -0.42 0.08 16 38 H 0.37 3.35 9.04 45.56 0.41 3.77 16 39 H 0.08 0.57 8.07 -51.93 -0.42 0.15 16 40 H 0.09 0.98 7.42 -51.93 -0.39 0.60 16 41 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 42 H 0.08 0.49 7.11 -51.93 -0.37 0.12 16 43 H 0.07 0.42 6.09 -51.93 -0.32 0.10 16 44 H 0.13 0.87 6.22 -52.49 -0.33 0.54 16 45 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 47 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 49 H 0.09 0.95 7.48 -51.93 -0.39 0.57 16 50 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 406.52 15.07 6.13 6.13 Total: -1.00 -35.55 406.52 -8.42 -43.96 By element: Atomic # 1 Polarization: 19.57 SS G_CDS: -7.23 Total: 12.34 kcal Atomic # 6 Polarization: 8.73 SS G_CDS: -1.10 Total: 7.63 kcal Atomic # 7 Polarization: -54.29 SS G_CDS: -0.92 Total: -55.21 kcal Atomic # 8 Polarization: -30.93 SS G_CDS: -0.27 Total: -31.20 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -35.55 -8.42 -43.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677150965.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.639 kcal (2) G-P(sol) polarization free energy of solvation -35.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds